Experiment: Inosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1780 and Shewana3_1781 are separated by 335 nucleotides Shewana3_1781 and Shewana3_1782 are separated by 12 nucleotides
Shewana3_1780: Shewana3_1780 - hypothetical protein (RefSeq), at 2,097,681 to 2,097,899
_1780
Shewana3_1781: Shewana3_1781 - hypothetical protein (RefSeq), at 2,098,235 to 2,100,277
_1781
Shewana3_1782: Shewana3_1782 - hypothetical protein (RefSeq), at 2,100,290 to 2,101,654
_1782
Position (kb)
2098
2099
2100
2101 Strain fitness (log2 ratio)
-2
-1
0
1 at 2097.263 kb on + strand at 2097.263 kb on + strand at 2097.432 kb on + strand at 2097.450 kb on + strand at 2097.458 kb on - strand at 2097.569 kb on - strand at 2098.273 kb on + strand at 2098.377 kb on - strand at 2098.431 kb on + strand at 2099.144 kb on + strand, within Shewana3_1781 at 2099.247 kb on - strand, within Shewana3_1781 at 2099.322 kb on - strand, within Shewana3_1781 at 2099.753 kb on - strand, within Shewana3_1781 at 2099.781 kb on + strand, within Shewana3_1781 at 2100.098 kb on - strand at 2100.127 kb on + strand at 2100.210 kb on + strand at 2100.333 kb on + strand at 2100.436 kb on + strand, within Shewana3_1782 at 2100.696 kb on - strand, within Shewana3_1782 at 2100.721 kb on + strand, within Shewana3_1782 at 2100.721 kb on + strand, within Shewana3_1782 at 2100.721 kb on + strand, within Shewana3_1782 at 2100.721 kb on + strand, within Shewana3_1782 at 2100.721 kb on + strand, within Shewana3_1782 at 2100.721 kb on + strand, within Shewana3_1782 at 2100.729 kb on - strand, within Shewana3_1782 at 2100.958 kb on + strand, within Shewana3_1782 at 2100.958 kb on + strand, within Shewana3_1782 at 2100.966 kb on - strand, within Shewana3_1782 at 2101.013 kb on - strand, within Shewana3_1782 at 2101.073 kb on + strand, within Shewana3_1782
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (C) remove 2,097,263 + +0.5 2,097,263 + -2.1 2,097,432 + -0.1 2,097,450 + -0.2 2,097,458 - -0.9 2,097,569 - +0.5 2,098,273 + -0.6 2,098,377 - -0.3 2,098,431 + -0.5 2,099,144 + Shewana3_1781 0.44 -1.5 2,099,247 - Shewana3_1781 0.50 -0.5 2,099,322 - Shewana3_1781 0.53 -1.1 2,099,753 - Shewana3_1781 0.74 +0.1 2,099,781 + Shewana3_1781 0.76 -0.6 2,100,098 - -0.4 2,100,127 + -0.5 2,100,210 + +0.4 2,100,333 + -1.0 2,100,436 + Shewana3_1782 0.11 +0.4 2,100,696 - Shewana3_1782 0.30 -0.2 2,100,721 + Shewana3_1782 0.32 -0.2 2,100,721 + Shewana3_1782 0.32 +0.1 2,100,721 + Shewana3_1782 0.32 -0.1 2,100,721 + Shewana3_1782 0.32 -0.0 2,100,721 + Shewana3_1782 0.32 +0.2 2,100,721 + Shewana3_1782 0.32 +0.1 2,100,729 - Shewana3_1782 0.32 +0.2 2,100,958 + Shewana3_1782 0.49 +0.2 2,100,958 + Shewana3_1782 0.49 +0.1 2,100,966 - Shewana3_1782 0.50 -0.4 2,101,013 - Shewana3_1782 0.53 -0.2 2,101,073 + Shewana3_1782 0.57 -0.6
Or see this region's nucleotide sequence