Experiment: Inosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1161 and Shewana3_1162 are separated by 149 nucleotides Shewana3_1162 and Shewana3_1163 are separated by 268 nucleotides Shewana3_1163 and Shewana3_1164 are separated by 201 nucleotides
Shewana3_1161: Shewana3_1161 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 1,369,855 to 1,372,491
_1161
Shewana3_1162: Shewana3_1162 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 1,372,641 to 1,373,870
_1162
Shewana3_1163: Shewana3_1163 - hypothetical protein (RefSeq), at 1,374,139 to 1,374,648
_1163
Shewana3_1164: Shewana3_1164 - hypothetical protein (RefSeq), at 1,374,850 to 1,375,803
_1164
Position (kb)
1372
1373
1374 Strain fitness (log2 ratio)
-1
0
1 at 1371.666 kb on + strand, within Shewana3_1161 at 1372.100 kb on + strand, within Shewana3_1161 at 1372.154 kb on + strand, within Shewana3_1161 at 1372.435 kb on + strand at 1372.435 kb on + strand at 1372.437 kb on + strand at 1372.677 kb on + strand at 1372.973 kb on - strand, within Shewana3_1162 at 1373.079 kb on - strand, within Shewana3_1162 at 1373.180 kb on + strand, within Shewana3_1162 at 1373.390 kb on - strand, within Shewana3_1162 at 1373.575 kb on - strand, within Shewana3_1162 at 1373.698 kb on + strand, within Shewana3_1162 at 1374.007 kb on - strand at 1374.248 kb on + strand, within Shewana3_1163 at 1374.396 kb on + strand, within Shewana3_1163
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (C) remove 1,371,666 + Shewana3_1161 0.69 +0.1 1,372,100 + Shewana3_1161 0.85 +0.0 1,372,154 + Shewana3_1161 0.87 +1.1 1,372,435 + -0.7 1,372,435 + -0.1 1,372,437 + -0.7 1,372,677 + -0.2 1,372,973 - Shewana3_1162 0.27 -0.3 1,373,079 - Shewana3_1162 0.36 +0.6 1,373,180 + Shewana3_1162 0.44 +0.8 1,373,390 - Shewana3_1162 0.61 +0.5 1,373,575 - Shewana3_1162 0.76 +0.7 1,373,698 + Shewana3_1162 0.86 +0.3 1,374,007 - +0.5 1,374,248 + Shewana3_1163 0.21 +0.3 1,374,396 + Shewana3_1163 0.50 +0.7
Or see this region's nucleotide sequence