Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0984

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0983 and Shewana3_0984 overlap by 11 nucleotidesShewana3_0984 and Shewana3_0985 are separated by 84 nucleotidesShewana3_0985 and Shewana3_0986 are separated by 229 nucleotides Shewana3_0983: Shewana3_0983 - TonB-dependent siderophore receptor (RefSeq), at 1,153,788 to 1,155,959 _0983 Shewana3_0984: Shewana3_0984 - hypothetical protein (RefSeq), at 1,155,949 to 1,157,154 _0984 Shewana3_0985: Shewana3_0985 - Ferritin, Dps family protein (RefSeq), at 1,157,239 to 1,157,706 _0985 Shewana3_0986: Shewana3_0986 - hypothetical protein (RefSeq), at 1,157,936 to 1,158,286 _0986 Position (kb) 1155 1156 1157 1158Strain fitness (log2 ratio) -1 0 1at 1155.036 kb on + strand, within Shewana3_0983at 1155.084 kb on - strand, within Shewana3_0983at 1155.193 kb on - strand, within Shewana3_0983at 1155.337 kb on + strand, within Shewana3_0983at 1155.345 kb on - strand, within Shewana3_0983at 1155.421 kb on + strand, within Shewana3_0983at 1156.165 kb on - strand, within Shewana3_0984at 1156.268 kb on - strand, within Shewana3_0984at 1156.300 kb on - strand, within Shewana3_0984at 1156.340 kb on + strand, within Shewana3_0984at 1156.404 kb on + strand, within Shewana3_0984at 1156.414 kb on - strand, within Shewana3_0984at 1156.424 kb on - strand, within Shewana3_0984at 1156.494 kb on + strand, within Shewana3_0984at 1156.581 kb on + strand, within Shewana3_0984at 1156.594 kb on - strand, within Shewana3_0984at 1156.717 kb on + strand, within Shewana3_0984at 1156.759 kb on + strand, within Shewana3_0984at 1156.906 kb on + strand, within Shewana3_0984at 1156.914 kb on - strand, within Shewana3_0984at 1156.966 kb on + strand, within Shewana3_0984at 1157.093 kb on - strandat 1157.127 kb on - strandat 1157.286 kb on + strand, within Shewana3_0985at 1157.451 kb on + strand, within Shewana3_0985at 1157.495 kb on - strand, within Shewana3_0985at 1157.649 kb on + strand, within Shewana3_0985

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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1,155,036 + Shewana3_0983 0.57 +0.7
1,155,084 - Shewana3_0983 0.60 +0.1
1,155,193 - Shewana3_0983 0.65 -0.1
1,155,337 + Shewana3_0983 0.71 +0.7
1,155,345 - Shewana3_0983 0.72 -0.4
1,155,421 + Shewana3_0983 0.75 +0.0
1,156,165 - Shewana3_0984 0.18 +1.7
1,156,268 - Shewana3_0984 0.26 +0.8
1,156,300 - Shewana3_0984 0.29 +0.4
1,156,340 + Shewana3_0984 0.32 +0.3
1,156,404 + Shewana3_0984 0.38 +1.1
1,156,414 - Shewana3_0984 0.39 -0.0
1,156,424 - Shewana3_0984 0.39 +0.2
1,156,494 + Shewana3_0984 0.45 -0.7
1,156,581 + Shewana3_0984 0.52 -0.9
1,156,594 - Shewana3_0984 0.53 +0.4
1,156,717 + Shewana3_0984 0.64 -0.3
1,156,759 + Shewana3_0984 0.67 -0.1
1,156,906 + Shewana3_0984 0.79 +0.0
1,156,914 - Shewana3_0984 0.80 +0.6
1,156,966 + Shewana3_0984 0.84 +0.5
1,157,093 - +0.1
1,157,127 - +0.9
1,157,286 + Shewana3_0985 0.10 -0.6
1,157,451 + Shewana3_0985 0.45 -0.4
1,157,495 - Shewana3_0985 0.55 +0.5
1,157,649 + Shewana3_0985 0.88 -0.7

Or see this region's nucleotide sequence