Experiment: Inosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0427 and Shewana3_0428 are separated by 149 nucleotides Shewana3_0428 and Shewana3_0429 are separated by 140 nucleotides
Shewana3_0427: Shewana3_0427 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (RefSeq), at 487,935 to 489,941
_0427
Shewana3_0428: Shewana3_0428 - dihydrolipoamide dehydrogenase (RefSeq), at 490,091 to 491,518
_0428
Shewana3_0429: Shewana3_0429 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 491,659 to 496,122
_0429
Position (kb) 490
491
492 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 489.196 kb on - strand, within Shewana3_0427 at 489.299 kb on - strand, within Shewana3_0427 at 489.307 kb on + strand, within Shewana3_0427 at 489.363 kb on - strand, within Shewana3_0427 at 489.472 kb on - strand at 489.486 kb on + strand, within Shewana3_0427 at 489.546 kb on - strand, within Shewana3_0427 at 489.562 kb on + strand, within Shewana3_0427 at 489.562 kb on + strand, within Shewana3_0427 at 489.562 kb on + strand, within Shewana3_0427 at 489.570 kb on - strand, within Shewana3_0427 at 489.659 kb on + strand, within Shewana3_0427 at 489.675 kb on + strand, within Shewana3_0427 at 491.811 kb on - strand at 491.896 kb on + strand at 491.904 kb on - strand at 491.904 kb on - strand at 492.015 kb on + strand at 492.301 kb on - strand, within Shewana3_0429 at 492.376 kb on - strand, within Shewana3_0429 at 492.423 kb on - strand, within Shewana3_0429 at 492.435 kb on + strand, within Shewana3_0429
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (C) remove 489,196 - Shewana3_0427 0.63 -3.9 489,299 - Shewana3_0427 0.68 -2.2 489,307 + Shewana3_0427 0.68 -4.5 489,363 - Shewana3_0427 0.71 -1.4 489,472 - -1.8 489,486 + Shewana3_0427 0.77 -1.6 489,546 - Shewana3_0427 0.80 -3.2 489,562 + Shewana3_0427 0.81 -4.3 489,562 + Shewana3_0427 0.81 -2.2 489,562 + Shewana3_0427 0.81 -4.7 489,570 - Shewana3_0427 0.81 -1.4 489,659 + Shewana3_0427 0.86 -4.8 489,675 + Shewana3_0427 0.87 -2.8 491,811 - +0.3 491,896 + +0.3 491,904 - +1.5 491,904 - -1.0 492,015 + -0.4 492,301 - Shewana3_0429 0.14 +0.6 492,376 - Shewana3_0429 0.16 +0.5 492,423 - Shewana3_0429 0.17 +0.0 492,435 + Shewana3_0429 0.17 +0.4
Or see this region's nucleotide sequence