Experiment: Inosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4241 and Shewana3_4242 overlap by 1 nucleotides Shewana3_4242 and Shewana3_4243 are separated by 11 nucleotides Shewana3_4243 and Shewana3_4244 are separated by 17 nucleotides
Shewana3_4241: Shewana3_4241 - restriction modification system DNA specificity subunit (RefSeq), at 114,945 to 116,180
_4241
Shewana3_4242: Shewana3_4242 - hypothetical protein (RefSeq), at 116,180 to 116,785
_4242
Shewana3_4243: Shewana3_4243 - hypothetical protein (RefSeq), at 116,797 to 117,114
_4243
Shewana3_4244: Shewana3_4244 - HsdR family type I site-specific deoxyribonuclease (RefSeq), at 117,132 to 120,386
_4244
Position (kb)
116
117
118 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 115.835 kb on - strand, within Shewana3_4241 at 115.840 kb on - strand, within Shewana3_4241 at 115.840 kb on - strand, within Shewana3_4241 at 115.845 kb on + strand, within Shewana3_4241 at 115.941 kb on + strand, within Shewana3_4241 at 115.998 kb on + strand, within Shewana3_4241 at 116.183 kb on - strand at 116.251 kb on - strand, within Shewana3_4242 at 116.280 kb on - strand, within Shewana3_4242 at 116.285 kb on - strand, within Shewana3_4242 at 116.527 kb on - strand, within Shewana3_4242 at 116.607 kb on + strand, within Shewana3_4242 at 116.665 kb on + strand, within Shewana3_4242 at 116.721 kb on + strand, within Shewana3_4242 at 116.721 kb on + strand, within Shewana3_4242 at 116.856 kb on + strand, within Shewana3_4243 at 116.866 kb on + strand, within Shewana3_4243 at 116.918 kb on + strand, within Shewana3_4243 at 117.050 kb on + strand, within Shewana3_4243 at 117.060 kb on + strand, within Shewana3_4243 at 117.068 kb on - strand, within Shewana3_4243 at 117.153 kb on + strand at 117.158 kb on + strand at 117.180 kb on - strand at 117.294 kb on - strand at 117.302 kb on - strand at 117.361 kb on + strand at 117.361 kb on + strand at 117.361 kb on + strand at 117.369 kb on - strand at 117.369 kb on - strand at 117.371 kb on + strand at 117.423 kb on + strand at 117.565 kb on + strand, within Shewana3_4244 at 117.565 kb on + strand, within Shewana3_4244 at 117.586 kb on - strand, within Shewana3_4244 at 117.593 kb on - strand, within Shewana3_4244 at 117.656 kb on - strand, within Shewana3_4244 at 117.667 kb on - strand, within Shewana3_4244 at 117.851 kb on + strand, within Shewana3_4244 at 118.003 kb on - strand, within Shewana3_4244 at 118.018 kb on - strand, within Shewana3_4244 at 118.108 kb on - strand, within Shewana3_4244
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (C) remove 115,835 - Shewana3_4241 0.72 -0.1 115,840 - Shewana3_4241 0.72 +0.9 115,840 - Shewana3_4241 0.72 -0.0 115,845 + Shewana3_4241 0.73 +0.3 115,941 + Shewana3_4241 0.81 -0.5 115,998 + Shewana3_4241 0.85 +0.3 116,183 - +0.6 116,251 - Shewana3_4242 0.12 +0.7 116,280 - Shewana3_4242 0.17 +0.7 116,285 - Shewana3_4242 0.17 +0.3 116,527 - Shewana3_4242 0.57 -0.1 116,607 + Shewana3_4242 0.70 -0.9 116,665 + Shewana3_4242 0.80 -0.3 116,721 + Shewana3_4242 0.89 -0.8 116,721 + Shewana3_4242 0.89 -0.5 116,856 + Shewana3_4243 0.19 +0.5 116,866 + Shewana3_4243 0.22 +0.2 116,918 + Shewana3_4243 0.38 -1.1 117,050 + Shewana3_4243 0.80 -0.8 117,060 + Shewana3_4243 0.83 -1.4 117,068 - Shewana3_4243 0.85 -0.0 117,153 + +0.5 117,158 + +1.0 117,180 - +0.5 117,294 - -0.4 117,302 - +1.2 117,361 + -0.5 117,361 + +0.6 117,361 + +0.7 117,369 - +1.3 117,369 - -0.1 117,371 + +0.5 117,423 + +0.2 117,565 + Shewana3_4244 0.13 -0.5 117,565 + Shewana3_4244 0.13 +1.2 117,586 - Shewana3_4244 0.14 +0.8 117,593 - Shewana3_4244 0.14 +1.1 117,656 - Shewana3_4244 0.16 -3.1 117,667 - Shewana3_4244 0.16 -0.7 117,851 + Shewana3_4244 0.22 -0.7 118,003 - Shewana3_4244 0.27 -1.1 118,018 - Shewana3_4244 0.27 +3.0 118,108 - Shewana3_4244 0.30 +0.5
Or see this region's nucleotide sequence