Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2603

Experiment: Flask growth in 60 uE Light-Dark 12:12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask growth in 60 uE Light-Dark 12:12
2,684,058	-				-0.3
2,684,086	+				-0.7
2,684,094	-				-0.2
2,684,113	+				-0.4
2,684,203	+	ctaC	Synpcc7942_2602	0.17	-0.6
2,684,208	+	ctaC	Synpcc7942_2602	0.17	-1.7
2,684,218	+	ctaC	Synpcc7942_2602	0.18	-1.3
2,684,226	-	ctaC	Synpcc7942_2602	0.19	-1.0
2,684,282	-	ctaC	Synpcc7942_2602	0.25	-0.5
2,684,284	+	ctaC	Synpcc7942_2602	0.25	+1.3
2,684,352	-	ctaC	Synpcc7942_2602	0.32	-1.5
2,684,352	-	ctaC	Synpcc7942_2602	0.32	-1.5
2,684,352	-	ctaC	Synpcc7942_2602	0.32	-2.4
2,684,366	+	ctaC	Synpcc7942_2602	0.34	-1.2
2,684,366	+	ctaC	Synpcc7942_2602	0.34	-1.8
2,684,374	-	ctaC	Synpcc7942_2602	0.35	-0.6
2,684,374	-	ctaC	Synpcc7942_2602	0.35	+0.8
2,684,374	-	ctaC	Synpcc7942_2602	0.35	-0.9
2,684,389	+	ctaC	Synpcc7942_2602	0.36	-0.5
2,684,399	+	ctaC	Synpcc7942_2602	0.37	-2.1
2,684,407	-	ctaC	Synpcc7942_2602	0.38	-1.2
2,684,417	-	ctaC	Synpcc7942_2602	0.39	-1.3
2,684,429	+	ctaC	Synpcc7942_2602	0.41	-1.8
2,684,445	-				-0.5
2,684,445	-	ctaC	Synpcc7942_2602	0.42	-0.3
2,684,450	-	ctaC	Synpcc7942_2602	0.43	-1.2
2,684,456	+	ctaC	Synpcc7942_2602	0.43	-1.5
2,684,456	+	ctaC	Synpcc7942_2602	0.43	-2.1
2,684,456	+	ctaC	Synpcc7942_2602	0.43	-2.3
2,684,464	-	ctaC	Synpcc7942_2602	0.44	-1.2
2,684,464	-	ctaC	Synpcc7942_2602	0.44	-0.1
2,684,464	-	ctaC	Synpcc7942_2602	0.44	-0.3
2,684,510	+	ctaC	Synpcc7942_2602	0.49	-0.0
2,684,517	+	ctaC	Synpcc7942_2602	0.50	-0.6
2,684,525	+	ctaC	Synpcc7942_2602	0.51	-2.0
2,684,533	-	ctaC	Synpcc7942_2602	0.52	-1.3
2,684,536	+	ctaC	Synpcc7942_2602	0.52	+0.2
2,684,559	+	ctaC	Synpcc7942_2602	0.54	-0.1
2,684,567	-	ctaC	Synpcc7942_2602	0.55	-0.8
2,684,748	+	ctaC	Synpcc7942_2602	0.74	-0.5
2,684,756	-	ctaC	Synpcc7942_2602	0.75	-1.9
2,684,768	+				+0.6
2,684,786	+	ctaC	Synpcc7942_2602	0.78	+0.3
2,684,984	+				+0.7
2,685,181	+				-0.8
2,685,220	+	ctaD	Synpcc7942_2603	0.10	-1.6
2,685,233	-	ctaD	Synpcc7942_2603	0.11	-1.8
2,685,246	+	ctaD	Synpcc7942_2603	0.12	-1.5
2,685,293	-	ctaD	Synpcc7942_2603	0.15	-1.2
2,685,357	-	ctaD	Synpcc7942_2603	0.19	-0.2
2,685,460	-	ctaD	Synpcc7942_2603	0.25	-1.0
2,685,544	-	ctaD	Synpcc7942_2603	0.30	-0.4
2,685,567	-	ctaD	Synpcc7942_2603	0.32	-0.8
2,685,570	+	ctaD	Synpcc7942_2603	0.32	-0.9
2,685,611	+	ctaD	Synpcc7942_2603	0.34	-1.0
2,685,665	+	ctaD	Synpcc7942_2603	0.38	-1.3
2,685,727	+	ctaD	Synpcc7942_2603	0.42	+0.3
2,685,728	-	ctaD	Synpcc7942_2603	0.42	-1.5
2,685,735	-	ctaD	Synpcc7942_2603	0.42	-0.5
2,685,750	+	ctaD	Synpcc7942_2603	0.43	-0.7
2,685,830	+	ctaD	Synpcc7942_2603	0.48	-0.3
2,685,830	-	ctaD	Synpcc7942_2603	0.48	-0.9
2,685,898	-	ctaD	Synpcc7942_2603	0.52	-1.8
2,685,938	-	ctaD	Synpcc7942_2603	0.55	-2.3
2,685,988	+	ctaD	Synpcc7942_2603	0.58	-0.1
2,686,117	-	ctaD	Synpcc7942_2603	0.66	-0.4
2,686,159	+	ctaD	Synpcc7942_2603	0.68	-0.1
2,686,159	+	ctaD	Synpcc7942_2603	0.68	-1.4
2,686,354	+	ctaD	Synpcc7942_2603	0.80	-1.1
2,686,354	+	ctaD	Synpcc7942_2603	0.80	-2.0
2,686,354	+	ctaD	Synpcc7942_2603	0.80	-0.9
2,686,362	-	ctaD	Synpcc7942_2603	0.81	-2.0
2,686,384	+				-0.3
2,686,389	+	ctaD	Synpcc7942_2603	0.82	+0.0
2,686,392	-	ctaD	Synpcc7942_2603	0.82	-2.0
2,686,424	-	ctaD	Synpcc7942_2603	0.84	+0.4
2,686,472	-	ctaD	Synpcc7942_2603	0.87	-2.0
2,686,522	+				-2.5
2,686,540	-				-2.8
2,686,543	+				-0.9
2,686,551	-				+0.1
2,686,570	-				-1.4
2,686,713	+				-2.1
2,686,738	-				-0.2
2,686,861	+	ctaE	Synpcc7942_2604	0.23	-0.3
2,686,946	-				+1.0
2,687,144	-	ctaE	Synpcc7942_2604	0.71	-2.1
2,687,156	-	ctaE	Synpcc7942_2604	0.73	-0.3
2,687,406	-				+0.7
2,687,502	+		Synpcc7942_2605	0.19	+0.7
2,687,502	+		Synpcc7942_2605	0.19	-0.3
2,687,502	+		Synpcc7942_2605	0.19	+0.1
2,687,502	+		Synpcc7942_2605	0.19	+0.7
2,687,510	-				-1.0
2,687,510	-		Synpcc7942_2605	0.20	+0.6
2,687,653	-		Synpcc7942_2605	0.42	-0.1
2,687,659	-		Synpcc7942_2605	0.43	-0.6
2,687,670	+		Synpcc7942_2605	0.44	+0.2