Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2601

Experiment: Flask growth in 60 uE Light-Dark 12:12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask growth in 60 uE Light-Dark 12:12
2,681,935	+				-0.0
2,681,942	+				+0.2
2,681,942	+				-1.1
2,681,942	+				+0.4
2,681,942	+				-1.1
2,681,950	-				-0.4
2,681,968	-				+0.9
2,681,968	-				+0.8
2,681,983	+				+1.0
2,681,996	-				-1.0
2,682,001	-				-0.7
2,682,018	+				-2.3
2,682,029	+				-1.6
2,682,069	-	ctaB	Synpcc7942_2600	0.10	-0.5
2,682,074	-	ctaB	Synpcc7942_2600	0.11	-0.7
2,682,088	+	ctaB	Synpcc7942_2600	0.13	-2.3
2,682,156	+	ctaB	Synpcc7942_2600	0.21	-1.1
2,682,164	-	ctaB	Synpcc7942_2600	0.22	-2.3
2,682,164	-	ctaB	Synpcc7942_2600	0.22	-2.0
2,682,184	+	ctaB	Synpcc7942_2600	0.24	+0.8
2,682,185	+	ctaB	Synpcc7942_2600	0.24	-0.9
2,682,185	+	ctaB	Synpcc7942_2600	0.24	-0.5
2,682,185	+	ctaB	Synpcc7942_2600	0.24	-0.3
2,682,185	+	ctaB	Synpcc7942_2600	0.24	-1.7
2,682,185	+	ctaB	Synpcc7942_2600	0.24	-2.0
2,682,185	+	ctaB	Synpcc7942_2600	0.24	-1.6
2,682,185	-	ctaB	Synpcc7942_2600	0.24	-0.1
2,682,190	-	ctaB	Synpcc7942_2600	0.25	+0.2
2,682,226	-	ctaB	Synpcc7942_2600	0.29	-1.4
2,682,226	-	ctaB	Synpcc7942_2600	0.29	-0.9
2,682,231	-	ctaB	Synpcc7942_2600	0.30	-1.0
2,682,231	-	ctaB	Synpcc7942_2600	0.30	-1.2
2,682,249	-	ctaB	Synpcc7942_2600	0.32	-0.5
2,682,254	-	ctaB	Synpcc7942_2600	0.33	-1.7
2,682,281	+	ctaB	Synpcc7942_2600	0.36	-0.4
2,682,281	+	ctaB	Synpcc7942_2600	0.36	-0.5
2,682,319	-	ctaB	Synpcc7942_2600	0.40	-0.3
2,682,345	+	ctaB	Synpcc7942_2600	0.44	+0.1
2,682,372	+	ctaB	Synpcc7942_2600	0.47	-0.4
2,682,379	-	ctaB	Synpcc7942_2600	0.48	+0.2
2,682,412	+	ctaB	Synpcc7942_2600	0.52	-1.1
2,682,478	-	ctaB	Synpcc7942_2600	0.60	-0.4
2,682,484	+	ctaB	Synpcc7942_2600	0.60	-0.4
2,682,484	+	ctaB	Synpcc7942_2600	0.60	-1.3
2,682,484	+	ctaB	Synpcc7942_2600	0.60	-3.3
2,682,492	-	ctaB	Synpcc7942_2600	0.61	+0.2
2,682,515	+	ctaB	Synpcc7942_2600	0.64	+1.3
2,682,527	-	ctaB	Synpcc7942_2600	0.65	-0.3
2,682,547	-	ctaB	Synpcc7942_2600	0.68	-0.2
2,682,549	+	ctaB	Synpcc7942_2600	0.68	-1.1
2,682,591	+	ctaB	Synpcc7942_2600	0.73	-0.5
2,682,601	-	ctaB	Synpcc7942_2600	0.74	-2.3
2,682,621	-	ctaB	Synpcc7942_2600	0.77	-1.7
2,682,626	-	ctaB	Synpcc7942_2600	0.77	-0.4
2,682,635	-	ctaB	Synpcc7942_2600	0.78	-1.1
2,682,658	+	ctaB	Synpcc7942_2600	0.81	-1.0
2,682,666	-	ctaB	Synpcc7942_2600	0.82	-3.3
2,682,668	+	ctaB	Synpcc7942_2600	0.82	-2.3
2,682,671	-	ctaB	Synpcc7942_2600	0.83	+0.4
2,682,680	+	ctaB	Synpcc7942_2600	0.84	-0.2
2,682,682	+	ctaB	Synpcc7942_2600	0.84	-0.2
2,682,692	-				+0.2
2,682,693	+	ctaB	Synpcc7942_2600	0.85	-2.4
2,682,708	+	ctaB	Synpcc7942_2600	0.87	+2.4
2,682,716	-	ctaB	Synpcc7942_2600	0.88	-1.2
2,682,718	+	ctaB	Synpcc7942_2600	0.88	-1.4
2,682,726	-	ctaB	Synpcc7942_2600	0.89	-0.5
2,682,726	-	ctaB	Synpcc7942_2600	0.89	-0.7
2,682,747	+				-3.4
2,682,777	+				-2.1
2,682,840	+				-0.3
2,682,848	-				+0.6
2,682,848	-				-0.8
2,682,862	-				-0.7
2,682,872	-				-0.4
2,682,874	+				+0.0
2,682,875	+				+0.5
2,682,883	-				+0.9
2,682,883	-				+0.2
2,682,883	-				-0.2
2,682,883	-				+0.2
2,682,905	-				-0.0
2,682,909	+				-1.0
2,682,928	+				-0.7
2,682,928	+				-0.4
2,682,936	-				-0.6
2,682,964	+				+0.0
2,682,969	+				-1.8
2,682,972	-				+0.7
2,682,977	-				+0.3
2,682,977	-				-1.2
2,683,013	-	ctaA	Synpcc7942_2601	0.12	-2.4
2,683,049	-	ctaA	Synpcc7942_2601	0.16	-0.1
2,683,085	+	ctaA	Synpcc7942_2601	0.20	-1.0
2,683,093	-	ctaA	Synpcc7942_2601	0.21	-3.0
2,683,093	-	ctaA	Synpcc7942_2601	0.21	-2.2
2,683,117	+	ctaA	Synpcc7942_2601	0.24	-1.0
2,683,136	+	ctaA	Synpcc7942_2601	0.26	+0.6
2,683,136	+	ctaA	Synpcc7942_2601	0.26	-0.3
2,683,151	-	ctaA	Synpcc7942_2601	0.28	-1.3
2,683,212	-	ctaA	Synpcc7942_2601	0.34	-1.8
2,683,224	+	ctaA	Synpcc7942_2601	0.36	+0.0
2,683,224	+	ctaA	Synpcc7942_2601	0.36	-2.7
2,683,224	+	ctaA	Synpcc7942_2601	0.36	-2.5
2,683,224	+	ctaA	Synpcc7942_2601	0.36	-1.6
2,683,227	-	ctaA	Synpcc7942_2601	0.36	-1.2
2,683,232	-	ctaA	Synpcc7942_2601	0.36	+0.4
2,683,232	-	ctaA	Synpcc7942_2601	0.36	-1.5
2,683,232	-	ctaA	Synpcc7942_2601	0.36	-0.3
2,683,232	-	ctaA	Synpcc7942_2601	0.36	-1.0
2,683,239	-	ctaA	Synpcc7942_2601	0.37	-1.6
2,683,250	+	ctaA	Synpcc7942_2601	0.38	-1.2
2,683,255	-	ctaA	Synpcc7942_2601	0.39	-0.8
2,683,274	+				+0.0
2,683,281	+	ctaA	Synpcc7942_2601	0.42	-1.4
2,683,287	+	ctaA	Synpcc7942_2601	0.42	-0.8
2,683,295	-	ctaA	Synpcc7942_2601	0.43	-0.3
2,683,295	-	ctaA	Synpcc7942_2601	0.43	+0.8
2,683,306	-	ctaA	Synpcc7942_2601	0.44	-1.7
2,683,306	-	ctaA	Synpcc7942_2601	0.44	+1.2
2,683,335	-	ctaA	Synpcc7942_2601	0.48	-1.1
2,683,391	+	ctaA	Synpcc7942_2601	0.54	-1.1
2,683,403	+	ctaA	Synpcc7942_2601	0.55	+0.1
2,683,422	+	ctaA	Synpcc7942_2601	0.57	-1.6
2,683,434	+	ctaA	Synpcc7942_2601	0.58	+1.2
2,683,437	-	ctaA	Synpcc7942_2601	0.59	-1.2
2,683,454	+	ctaA	Synpcc7942_2601	0.61	-0.9
2,683,464	+	ctaA	Synpcc7942_2601	0.62	-1.4
2,683,472	-	ctaA	Synpcc7942_2601	0.63	+0.2
2,683,472	-	ctaA	Synpcc7942_2601	0.63	-1.0
2,683,477	+	ctaA	Synpcc7942_2601	0.63	-1.0
2,683,477	+	ctaA	Synpcc7942_2601	0.63	-1.6
2,683,478	+	ctaA	Synpcc7942_2601	0.63	-0.2
2,683,479	+	ctaA	Synpcc7942_2601	0.63	+0.0
2,683,485	-	ctaA	Synpcc7942_2601	0.64	-1.1
2,683,505	+	ctaA	Synpcc7942_2601	0.66	+0.5
2,683,524	+	ctaA	Synpcc7942_2601	0.68	+0.0
2,683,531	+	ctaA	Synpcc7942_2601	0.69	-0.3
2,683,531	+	ctaA	Synpcc7942_2601	0.69	-1.5
2,683,532	-	ctaA	Synpcc7942_2601	0.69	-1.4
2,683,539	-	ctaA	Synpcc7942_2601	0.70	-0.5
2,683,539	-	ctaA	Synpcc7942_2601	0.70	-1.9
2,683,541	+	ctaA	Synpcc7942_2601	0.70	+1.1
2,683,575	+	ctaA	Synpcc7942_2601	0.74	-0.1
2,683,583	-				+1.0
2,683,595	+	ctaA	Synpcc7942_2601	0.76	-1.7
2,683,598	-	ctaA	Synpcc7942_2601	0.76	-0.4
2,683,598	-	ctaA	Synpcc7942_2601	0.76	-0.9
2,683,603	-	ctaA	Synpcc7942_2601	0.77	-2.9
2,683,635	-	ctaA	Synpcc7942_2601	0.80	-0.4
2,683,656	+	ctaA	Synpcc7942_2601	0.83	-1.3
2,683,672	+	ctaA	Synpcc7942_2601	0.84	+0.2
2,683,674	-	ctaA	Synpcc7942_2601	0.85	-0.5
2,683,674	-	ctaA	Synpcc7942_2601	0.85	-2.1
2,683,680	-	ctaA	Synpcc7942_2601	0.85	-1.2
2,683,703	-	ctaA	Synpcc7942_2601	0.88	-1.5
2,683,817	-				+2.4
2,683,823	-				-0.1
2,683,938	-				-0.4
2,684,058	-				-0.3
2,684,086	+				-0.7
2,684,094	-				-0.2
2,684,113	+				-0.4
2,684,203	+	ctaC	Synpcc7942_2602	0.17	-0.6
2,684,208	+	ctaC	Synpcc7942_2602	0.17	-1.7
2,684,218	+	ctaC	Synpcc7942_2602	0.18	-1.3
2,684,226	-	ctaC	Synpcc7942_2602	0.19	-1.0
2,684,282	-	ctaC	Synpcc7942_2602	0.25	-0.5
2,684,284	+	ctaC	Synpcc7942_2602	0.25	+1.3
2,684,352	-	ctaC	Synpcc7942_2602	0.32	-1.5
2,684,352	-	ctaC	Synpcc7942_2602	0.32	-1.5
2,684,352	-	ctaC	Synpcc7942_2602	0.32	-2.4
2,684,366	+	ctaC	Synpcc7942_2602	0.34	-1.2
2,684,366	+	ctaC	Synpcc7942_2602	0.34	-1.8
2,684,374	-	ctaC	Synpcc7942_2602	0.35	-0.6
2,684,374	-	ctaC	Synpcc7942_2602	0.35	+0.8
2,684,374	-	ctaC	Synpcc7942_2602	0.35	-0.9
2,684,389	+	ctaC	Synpcc7942_2602	0.36	-0.5
2,684,399	+	ctaC	Synpcc7942_2602	0.37	-2.1
2,684,407	-	ctaC	Synpcc7942_2602	0.38	-1.2
2,684,417	-	ctaC	Synpcc7942_2602	0.39	-1.3
2,684,429	+	ctaC	Synpcc7942_2602	0.41	-1.8
2,684,445	-				-0.5
2,684,445	-	ctaC	Synpcc7942_2602	0.42	-0.3
2,684,450	-	ctaC	Synpcc7942_2602	0.43	-1.2
2,684,456	+	ctaC	Synpcc7942_2602	0.43	-1.5
2,684,456	+	ctaC	Synpcc7942_2602	0.43	-2.1
2,684,456	+	ctaC	Synpcc7942_2602	0.43	-2.3
2,684,464	-	ctaC	Synpcc7942_2602	0.44	-1.2
2,684,464	-	ctaC	Synpcc7942_2602	0.44	-0.1
2,684,464	-	ctaC	Synpcc7942_2602	0.44	-0.3
2,684,510	+	ctaC	Synpcc7942_2602	0.49	-0.0
2,684,517	+	ctaC	Synpcc7942_2602	0.50	-0.6
2,684,525	+	ctaC	Synpcc7942_2602	0.51	-2.0
2,684,533	-	ctaC	Synpcc7942_2602	0.52	-1.3
2,684,536	+	ctaC	Synpcc7942_2602	0.52	+0.2
2,684,559	+	ctaC	Synpcc7942_2602	0.54	-0.1
2,684,567	-	ctaC	Synpcc7942_2602	0.55	-0.8
2,684,748	+	ctaC	Synpcc7942_2602	0.74	-0.5
2,684,756	-	ctaC	Synpcc7942_2602	0.75	-1.9
2,684,768	+				+0.6
2,684,786	+	ctaC	Synpcc7942_2602	0.78	+0.3