Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2599

Experiment: Flask growth in 60 uE Light-Dark 12:12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask growth in 60 uE Light-Dark 12:12
2,680,505	+				+2.2
2,680,532	+		Synpcc7942_2598	0.11	+2.7
2,680,613	+		Synpcc7942_2598	0.19	+2.6
2,680,618	-		Synpcc7942_2598	0.19	+1.7
2,680,630	+		Synpcc7942_2598	0.20	+3.4
2,680,714	+		Synpcc7942_2598	0.28	+2.9
2,680,716	+		Synpcc7942_2598	0.28	+2.5
2,680,722	-		Synpcc7942_2598	0.29	+1.8
2,680,805	-		Synpcc7942_2598	0.37	+2.9
2,680,805	-		Synpcc7942_2598	0.37	+1.7
2,680,838	+		Synpcc7942_2598	0.40	+2.4
2,680,858	+		Synpcc7942_2598	0.42	+2.9
2,680,858	+		Synpcc7942_2598	0.42	+1.1
2,680,865	-		Synpcc7942_2598	0.42	+3.5
2,680,866	-		Synpcc7942_2598	0.42	+2.2
2,680,866	-		Synpcc7942_2598	0.42	+2.9
2,680,866	-		Synpcc7942_2598	0.42	+1.4
2,680,866	-				+3.1
2,680,866	-		Synpcc7942_2598	0.42	+3.0
2,680,885	-		Synpcc7942_2598	0.44	+1.9
2,680,971	+		Synpcc7942_2598	0.52	+2.7
2,680,986	+		Synpcc7942_2598	0.53	+3.2
2,681,003	+		Synpcc7942_2598	0.55	+2.4
2,681,015	+		Synpcc7942_2598	0.56	+2.6
2,681,023	-		Synpcc7942_2598	0.57	+2.6
2,681,049	+		Synpcc7942_2598	0.59	+1.8
2,681,057	-		Synpcc7942_2598	0.60	+3.2
2,681,057	-		Synpcc7942_2598	0.60	+3.4
2,681,057	-		Synpcc7942_2598	0.60	+1.6
2,681,064	+		Synpcc7942_2598	0.61	+1.8
2,681,208	+		Synpcc7942_2598	0.74	+2.7
2,681,208	+		Synpcc7942_2598	0.74	+2.5
2,681,218	+				+2.5
2,681,226	-		Synpcc7942_2598	0.76	+3.7
2,681,259	+		Synpcc7942_2598	0.79	+2.9
2,681,262	+		Synpcc7942_2598	0.79	+2.2
2,681,269	+		Synpcc7942_2598	0.80	+1.9
2,681,269	-		Synpcc7942_2598	0.80	+3.1
2,681,274	+		Synpcc7942_2598	0.80	+3.3
2,681,299	-				+1.9
2,681,331	-		Synpcc7942_2598	0.86	+2.7
2,681,421	+				+2.7
2,681,422	+				+2.1
2,681,436	+				+1.8
2,681,443	-				+2.5
2,681,463	+				+2.3
2,681,469	-				+0.5
2,681,476	-				+2.2
2,681,494	+				+0.4
2,681,494	+				+0.0
2,681,494	+				+1.0
2,681,494	+				-1.3
2,681,497	-				+2.0
2,681,511	+				+0.4
2,681,512	-				-0.7
2,681,512	-				+0.8
2,681,539	+		Synpcc7942_2599	0.15	+2.3
2,681,544	+		Synpcc7942_2599	0.16	+1.4
2,681,557	+		Synpcc7942_2599	0.20	+0.2
2,681,567	+		Synpcc7942_2599	0.23	+2.0
2,681,572	+		Synpcc7942_2599	0.24	+0.4
2,681,575	-		Synpcc7942_2599	0.25	+2.8
2,681,575	-		Synpcc7942_2599	0.25	+2.5
2,681,595	-		Synpcc7942_2599	0.31	+2.5
2,681,606	+		Synpcc7942_2599	0.34	-1.2
2,681,606	+		Synpcc7942_2599	0.34	-0.1
2,681,614	-		Synpcc7942_2599	0.36	+0.1
2,681,614	-		Synpcc7942_2599	0.36	-1.9
2,681,614	-		Synpcc7942_2599	0.36	+0.9
2,681,614	-		Synpcc7942_2599	0.36	-0.3
2,681,614	-		Synpcc7942_2599	0.36	+3.3
2,681,625	+		Synpcc7942_2599	0.39	+0.6
2,681,633	-		Synpcc7942_2599	0.42	-0.1
2,681,635	+		Synpcc7942_2599	0.42	-0.6
2,681,635	+		Synpcc7942_2599	0.42	+0.8
2,681,643	+		Synpcc7942_2599	0.44	+1.9
2,681,643	+		Synpcc7942_2599	0.44	-0.3
2,681,645	+		Synpcc7942_2599	0.45	-0.6
2,681,651	-		Synpcc7942_2599	0.47	+0.3
2,681,651	-		Synpcc7942_2599	0.47	+0.9
2,681,666	-		Synpcc7942_2599	0.51	+0.8
2,681,695	-		Synpcc7942_2599	0.59	+0.7
2,681,695	-		Synpcc7942_2599	0.59	+1.9
2,681,703	+		Synpcc7942_2599	0.61	-1.3
2,681,711	-		Synpcc7942_2599	0.64	+0.2
2,681,718	+		Synpcc7942_2599	0.66	+0.7
2,681,757	+		Synpcc7942_2599	0.77	-0.1
2,681,765	-		Synpcc7942_2599	0.79	+0.9
2,681,765	-		Synpcc7942_2599	0.79	+0.9
2,681,793	+				+2.5
2,681,793	+		Synpcc7942_2599	0.87	+0.5
2,681,803	+		Synpcc7942_2599	0.90	+0.2
2,681,878	+				-0.7
2,681,878	+				+0.1
2,681,883	+				-0.3
2,681,891	-				-1.0
2,681,935	+				-0.0
2,681,942	+				+0.2
2,681,942	+				-1.1
2,681,942	+				+0.4
2,681,942	+				-1.1
2,681,950	-				-0.4
2,681,968	-				+0.9
2,681,968	-				+0.8
2,681,983	+				+1.0
2,681,996	-				-1.0
2,682,001	-				-0.7
2,682,018	+				-2.3
2,682,029	+				-1.6
2,682,069	-	ctaB	Synpcc7942_2600	0.10	-0.5
2,682,074	-	ctaB	Synpcc7942_2600	0.11	-0.7
2,682,088	+	ctaB	Synpcc7942_2600	0.13	-2.3
2,682,156	+	ctaB	Synpcc7942_2600	0.21	-1.1
2,682,164	-	ctaB	Synpcc7942_2600	0.22	-2.3
2,682,164	-	ctaB	Synpcc7942_2600	0.22	-2.0
2,682,184	+	ctaB	Synpcc7942_2600	0.24	+0.8
2,682,185	+	ctaB	Synpcc7942_2600	0.24	-0.9
2,682,185	+	ctaB	Synpcc7942_2600	0.24	-0.5
2,682,185	+	ctaB	Synpcc7942_2600	0.24	-0.3
2,682,185	+	ctaB	Synpcc7942_2600	0.24	-1.7
2,682,185	+	ctaB	Synpcc7942_2600	0.24	-2.0
2,682,185	+	ctaB	Synpcc7942_2600	0.24	-1.6
2,682,185	-	ctaB	Synpcc7942_2600	0.24	-0.1
2,682,190	-	ctaB	Synpcc7942_2600	0.25	+0.2
2,682,226	-	ctaB	Synpcc7942_2600	0.29	-1.4
2,682,226	-	ctaB	Synpcc7942_2600	0.29	-0.9
2,682,231	-	ctaB	Synpcc7942_2600	0.30	-1.0
2,682,231	-	ctaB	Synpcc7942_2600	0.30	-1.2
2,682,249	-	ctaB	Synpcc7942_2600	0.32	-0.5
2,682,254	-	ctaB	Synpcc7942_2600	0.33	-1.7
2,682,281	+	ctaB	Synpcc7942_2600	0.36	-0.4
2,682,281	+	ctaB	Synpcc7942_2600	0.36	-0.5
2,682,319	-	ctaB	Synpcc7942_2600	0.40	-0.3
2,682,345	+	ctaB	Synpcc7942_2600	0.44	+0.1
2,682,372	+	ctaB	Synpcc7942_2600	0.47	-0.4
2,682,379	-	ctaB	Synpcc7942_2600	0.48	+0.2
2,682,412	+	ctaB	Synpcc7942_2600	0.52	-1.1
2,682,478	-	ctaB	Synpcc7942_2600	0.60	-0.4
2,682,484	+	ctaB	Synpcc7942_2600	0.60	-0.4
2,682,484	+	ctaB	Synpcc7942_2600	0.60	-1.3
2,682,484	+	ctaB	Synpcc7942_2600	0.60	-3.3
2,682,492	-	ctaB	Synpcc7942_2600	0.61	+0.2
2,682,515	+	ctaB	Synpcc7942_2600	0.64	+1.3
2,682,527	-	ctaB	Synpcc7942_2600	0.65	-0.3
2,682,547	-	ctaB	Synpcc7942_2600	0.68	-0.2
2,682,549	+	ctaB	Synpcc7942_2600	0.68	-1.1
2,682,591	+	ctaB	Synpcc7942_2600	0.73	-0.5
2,682,601	-	ctaB	Synpcc7942_2600	0.74	-2.3
2,682,621	-	ctaB	Synpcc7942_2600	0.77	-1.7
2,682,626	-	ctaB	Synpcc7942_2600	0.77	-0.4
2,682,635	-	ctaB	Synpcc7942_2600	0.78	-1.1
2,682,658	+	ctaB	Synpcc7942_2600	0.81	-1.0
2,682,666	-	ctaB	Synpcc7942_2600	0.82	-3.3
2,682,668	+	ctaB	Synpcc7942_2600	0.82	-2.3
2,682,671	-	ctaB	Synpcc7942_2600	0.83	+0.4
2,682,680	+	ctaB	Synpcc7942_2600	0.84	-0.2
2,682,682	+	ctaB	Synpcc7942_2600	0.84	-0.2
2,682,692	-				+0.2
2,682,693	+	ctaB	Synpcc7942_2600	0.85	-2.4
2,682,708	+	ctaB	Synpcc7942_2600	0.87	+2.4
2,682,716	-	ctaB	Synpcc7942_2600	0.88	-1.2
2,682,718	+	ctaB	Synpcc7942_2600	0.88	-1.4
2,682,726	-	ctaB	Synpcc7942_2600	0.89	-0.5
2,682,726	-	ctaB	Synpcc7942_2600	0.89	-0.7
2,682,747	+				-3.4
2,682,777	+				-2.1