Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2520

Experiment: Flask growth in 60 uE Light-Dark 12:12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask growth in 60 uE Light-Dark 12:12
2,601,055	+		Synpcc7942_2519	0.69	-0.1
2,601,061	-		Synpcc7942_2519	0.69	-1.5
2,601,213	+		Synpcc7942_2519	0.75	+0.5
2,601,249	+		Synpcc7942_2519	0.76	-1.6
2,601,333	-		Synpcc7942_2519	0.79	+0.2
2,601,402	-		Synpcc7942_2519	0.82	-0.2
2,601,413	+		Synpcc7942_2519	0.82	+0.8
2,601,463	-		Synpcc7942_2519	0.84	-0.2
2,601,471	-		Synpcc7942_2519	0.84	-0.5
2,601,630	+				+0.6
2,601,643	-				+0.8
2,601,656	-				+0.2
2,601,704	+				+1.2
2,601,750	+				+0.4
2,601,822	+				+0.5
2,601,836	+				-1.1
2,601,844	-				+0.0
2,601,860	+				+0.5
2,601,925	-				+0.3
2,601,939	-				-1.9
2,601,971	-				+1.2
2,601,986	-				-1.1
2,602,008	-				-1.2
2,602,008	-				-2.0
2,602,076	+		Synpcc7942_2520	0.14	-2.3
2,602,093	+		Synpcc7942_2520	0.16	-1.2
2,602,117	-		Synpcc7942_2520	0.19	-1.8
2,602,187	+		Synpcc7942_2520	0.29	-0.6
2,602,188	+		Synpcc7942_2520	0.29	-0.5
2,602,188	+		Synpcc7942_2520	0.29	-0.1
2,602,197	+		Synpcc7942_2520	0.31	-1.1
2,602,222	-		Synpcc7942_2520	0.34	-2.0
2,602,331	+		Synpcc7942_2520	0.50	-0.5
2,602,331	+		Synpcc7942_2520	0.50	-4.2
2,602,331	-		Synpcc7942_2520	0.50	-0.2
2,602,345	-		Synpcc7942_2520	0.51	-2.1
2,602,348	-		Synpcc7942_2520	0.52	-0.4
2,602,370	-		Synpcc7942_2520	0.55	-1.0
2,602,370	-		Synpcc7942_2520	0.55	-3.0
2,602,372	+				+0.4
2,602,380	-		Synpcc7942_2520	0.56	-1.2
2,602,382	-		Synpcc7942_2520	0.57	-1.0
2,602,387	-		Synpcc7942_2520	0.57	-1.9
2,602,394	+		Synpcc7942_2520	0.58	-1.7
2,602,435	+		Synpcc7942_2520	0.64	-0.9
2,602,483	-		Synpcc7942_2520	0.71	-1.5
2,602,489	-		Synpcc7942_2520	0.72	-1.2
2,602,493	-		Synpcc7942_2520	0.72	-1.3
2,602,494	-		Synpcc7942_2520	0.72	+0.0
2,602,641	+				-3.2
2,602,641	+				-0.8
2,602,664	-				+1.0
2,602,664	-				-0.7
2,602,665	-				-1.9
2,602,668	+				-0.8
2,602,669	-				-0.4
2,602,675	-				-0.5
2,602,696	+				+0.8
2,602,696	+				-1.9
2,602,703	+				-0.4
2,602,704	-				-0.7
2,602,735	+				-0.7
2,602,753	-				-0.5
2,602,761	-				-1.7
2,602,795	+				-0.5
2,602,807	+				-0.2
2,602,880	+	gpsA	Synpcc7942_2521	0.14	-0.8
2,602,898	-	gpsA	Synpcc7942_2521	0.15	-0.7
2,602,898	-	gpsA	Synpcc7942_2521	0.15	+0.0
2,602,898	-	gpsA	Synpcc7942_2521	0.15	-1.0
2,602,900	+	gpsA	Synpcc7942_2521	0.15	-0.2
2,602,923	+	gpsA	Synpcc7942_2521	0.17	-0.3
2,602,958	+	gpsA	Synpcc7942_2521	0.20	-4.0
2,602,958	+	gpsA	Synpcc7942_2521	0.20	-0.7
2,602,988	-	gpsA	Synpcc7942_2521	0.22	-0.6
2,603,069	-	gpsA	Synpcc7942_2521	0.28	-1.2
2,603,072	-	gpsA	Synpcc7942_2521	0.28	-0.0
2,603,073	+	gpsA	Synpcc7942_2521	0.28	-0.1
2,603,117	-	gpsA	Synpcc7942_2521	0.32	+0.4
2,603,221	+	gpsA	Synpcc7942_2521	0.39	-1.0
2,603,263	+	gpsA	Synpcc7942_2521	0.43	-2.3
2,603,289	-	gpsA	Synpcc7942_2521	0.44	-0.5
2,603,297	-	gpsA	Synpcc7942_2521	0.45	-0.5
2,603,390	+	gpsA	Synpcc7942_2521	0.52	+0.0
2,603,408	-	gpsA	Synpcc7942_2521	0.53	-0.3
2,603,498	-	gpsA	Synpcc7942_2521	0.60	-0.9
2,603,537	+	gpsA	Synpcc7942_2521	0.63	-2.4
2,603,537	+	gpsA	Synpcc7942_2521	0.63	-0.8
2,603,542	+	gpsA	Synpcc7942_2521	0.64	-1.2
2,603,542	+	gpsA	Synpcc7942_2521	0.64	+0.5
2,603,555	-	gpsA	Synpcc7942_2521	0.64	-1.1
2,603,555	-	gpsA	Synpcc7942_2521	0.64	-0.1
2,603,557	-	gpsA	Synpcc7942_2521	0.65	-0.1
2,603,570	-	gpsA	Synpcc7942_2521	0.66	-2.0
2,603,603	+	gpsA	Synpcc7942_2521	0.68	-0.4
2,603,611	-	gpsA	Synpcc7942_2521	0.69	-0.1
2,603,616	-	gpsA	Synpcc7942_2521	0.69	-1.3
2,603,637	-	gpsA	Synpcc7942_2521	0.71	-1.9
2,603,637	-				+0.3