Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2335

Experiment: Flask growth in 60 uE Light-Dark 12:12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask growth in 60 uE Light-Dark 12:12
2,401,943	+	zwf	Synpcc7942_2334	0.39	-1.6
2,401,943	+	zwf	Synpcc7942_2334	0.39	-1.7
2,401,943	+	zwf	Synpcc7942_2334	0.39	-2.2
2,401,943	+	zwf	Synpcc7942_2334	0.39	-3.2
2,401,943	+	zwf	Synpcc7942_2334	0.39	-1.5
2,401,943	+	zwf	Synpcc7942_2334	0.39	-1.4
2,401,943	+	zwf	Synpcc7942_2334	0.39	-2.3
2,401,943	+	zwf	Synpcc7942_2334	0.39	-2.4
2,401,951	-	zwf	Synpcc7942_2334	0.40	-3.5
2,401,951	-	zwf	Synpcc7942_2334	0.40	-2.3
2,401,951	-	zwf	Synpcc7942_2334	0.40	+0.4
2,401,956	-	zwf	Synpcc7942_2334	0.40	-1.0
2,402,010	-	zwf	Synpcc7942_2334	0.44	-1.8
2,402,012	+	zwf	Synpcc7942_2334	0.44	-2.2
2,402,012	+	zwf	Synpcc7942_2334	0.44	-3.4
2,402,020	-	zwf	Synpcc7942_2334	0.44	-2.8
2,402,020	-	zwf	Synpcc7942_2334	0.44	-2.4
2,402,020	-	zwf	Synpcc7942_2334	0.44	-2.1
2,402,051	+	zwf	Synpcc7942_2334	0.46	-3.0
2,402,051	-	zwf	Synpcc7942_2334	0.46	-3.2
2,402,053	-	zwf	Synpcc7942_2334	0.46	-2.0
2,402,053	-	zwf	Synpcc7942_2334	0.46	-2.4
2,402,083	+	zwf	Synpcc7942_2334	0.48	-3.2
2,402,086	-	zwf	Synpcc7942_2334	0.49	-3.9
2,402,098	+	zwf	Synpcc7942_2334	0.49	-1.6
2,402,103	+	zwf	Synpcc7942_2334	0.50	-3.6
2,402,106	+	zwf	Synpcc7942_2334	0.50	-5.4
2,402,107	-	zwf	Synpcc7942_2334	0.50	-3.1
2,402,110	+	zwf	Synpcc7942_2334	0.50	-2.2
2,402,142	-	zwf	Synpcc7942_2334	0.52	-1.2
2,402,173	-	zwf	Synpcc7942_2334	0.54	-2.9
2,402,173	-	zwf	Synpcc7942_2334	0.54	-2.1
2,402,179	+	zwf	Synpcc7942_2334	0.55	-3.6
2,402,182	-	zwf	Synpcc7942_2334	0.55	-4.8
2,402,187	-	zwf	Synpcc7942_2334	0.55	-2.2
2,402,198	-	zwf	Synpcc7942_2334	0.56	-3.1
2,402,203	-	zwf	Synpcc7942_2334	0.56	-1.6
2,402,217	+	zwf	Synpcc7942_2334	0.57	-2.9
2,402,278	+	zwf	Synpcc7942_2334	0.61	-2.7
2,402,284	-	zwf	Synpcc7942_2334	0.62	-1.3
2,402,284	-	zwf	Synpcc7942_2334	0.62	-3.2
2,402,285	-	zwf	Synpcc7942_2334	0.62	-0.6
2,402,299	-	zwf	Synpcc7942_2334	0.62	-3.5
2,402,338	-	zwf	Synpcc7942_2334	0.65	-2.7
2,402,345	+	zwf	Synpcc7942_2334	0.65	-3.5
2,402,409	+	zwf	Synpcc7942_2334	0.70	-3.9
2,402,410	+	zwf	Synpcc7942_2334	0.70	-1.4
2,402,418	-	zwf	Synpcc7942_2334	0.70	-2.6
2,402,428	-	zwf	Synpcc7942_2334	0.71	-4.3
2,402,428	-	zwf	Synpcc7942_2334	0.71	-3.0
2,402,438	-	zwf	Synpcc7942_2334	0.72	+0.4
2,402,447	+	zwf	Synpcc7942_2334	0.72	-5.1
2,402,449	+	zwf	Synpcc7942_2334	0.72	-2.7
2,402,462	+	zwf	Synpcc7942_2334	0.73	-1.6
2,402,488	-	zwf	Synpcc7942_2334	0.75	-4.3
2,402,546	-	zwf	Synpcc7942_2334	0.79	-1.6
2,402,552	-	zwf	Synpcc7942_2334	0.79	-3.5
2,402,553	+	zwf	Synpcc7942_2334	0.79	-4.0
2,402,553	+	zwf	Synpcc7942_2334	0.79	-3.7
2,402,561	-	zwf	Synpcc7942_2334	0.80	-1.3
2,402,561	-	zwf	Synpcc7942_2334	0.80	-2.7
2,402,583	-	zwf	Synpcc7942_2334	0.81	-2.1
2,402,586	+	zwf	Synpcc7942_2334	0.81	-3.6
2,402,586	+	zwf	Synpcc7942_2334	0.81	-2.9
2,402,586	+	zwf	Synpcc7942_2334	0.81	-4.7
2,402,586	+	zwf	Synpcc7942_2334	0.81	-2.3
2,402,594	-	zwf	Synpcc7942_2334	0.82	-3.7
2,402,602	+	zwf	Synpcc7942_2334	0.82	-4.0
2,402,634	+	zwf	Synpcc7942_2334	0.84	-2.8
2,402,642	-	zwf	Synpcc7942_2334	0.85	-5.0
2,402,650	-	zwf	Synpcc7942_2334	0.85	-2.0
2,402,759	+				-4.0
2,402,769	+				-2.4
2,402,769	+				-0.6
2,402,769	+				-2.3
2,402,776	-				-1.6
2,402,777	-				-2.0
2,402,777	-				-3.4
2,402,804	+				-2.7
2,402,835	+				-2.9
2,402,835	+				-2.0
2,402,843	-				-2.6
2,402,862	+				-2.2
2,402,862	+				-2.7
2,402,870	-				-1.0
2,402,870	-				-3.5
2,402,870	-				-1.0
2,402,870	-				-2.9
2,402,870	-				-1.8
2,402,870	-				-0.6
2,402,872	+				+1.2
2,402,872	+				-0.2
2,402,903	+				-0.5
2,402,911	-				-1.2
2,402,919	+				+0.4
2,402,919	+				-1.7
2,402,919	+				+0.7
2,402,919	+				+0.7
2,402,919	+				+0.0
2,402,927	-				-0.8
2,402,927	-				+0.1
2,402,927	-				+1.2
2,402,933	-				-0.6
2,402,945	-				+0.5
2,402,957	+				-2.1
2,402,957	+				-1.6
2,402,965	-				-2.2
2,403,005	+				-0.4
2,403,013	-				-1.2
2,403,013	-				+0.2
2,403,026	+	fbp	Synpcc7942_2335	0.10	-3.1
2,403,042	+	fbp	Synpcc7942_2335	0.12	-1.5
2,403,050	-	fbp	Synpcc7942_2335	0.12	+0.2
2,403,063	+	fbp	Synpcc7942_2335	0.14	-1.8
2,403,093	+	fbp	Synpcc7942_2335	0.17	-1.3
2,403,093	+	fbp	Synpcc7942_2335	0.17	-1.0
2,403,093	+	fbp	Synpcc7942_2335	0.17	-1.1
2,403,101	-	fbp	Synpcc7942_2335	0.17	-0.4
2,403,107	+	fbp	Synpcc7942_2335	0.18	+0.0
2,403,111	-	fbp	Synpcc7942_2335	0.18	-3.0
2,403,132	+	fbp	Synpcc7942_2335	0.20	+0.5
2,403,143	+	fbp	Synpcc7942_2335	0.21	+1.0
2,403,158	-	fbp	Synpcc7942_2335	0.23	-1.0
2,403,209	+	fbp	Synpcc7942_2335	0.28	-0.7
2,403,217	-	fbp	Synpcc7942_2335	0.29	-1.8
2,403,264	-	fbp	Synpcc7942_2335	0.33	-0.4
2,403,291	+	fbp	Synpcc7942_2335	0.36	-0.5
2,403,291	+	fbp	Synpcc7942_2335	0.36	-0.6
2,403,291	+	fbp	Synpcc7942_2335	0.36	-1.6
2,403,291	+	fbp	Synpcc7942_2335	0.36	-2.2
2,403,299	-	fbp	Synpcc7942_2335	0.37	-0.4
2,403,304	-	fbp	Synpcc7942_2335	0.37	-2.3
2,403,306	+	fbp	Synpcc7942_2335	0.37	-3.4
2,403,314	-	fbp	Synpcc7942_2335	0.38	-0.9
2,403,321	+	fbp	Synpcc7942_2335	0.39	-0.6
2,403,321	+	fbp	Synpcc7942_2335	0.39	-2.5
2,403,321	+	fbp	Synpcc7942_2335	0.39	-2.2
2,403,321	+	fbp	Synpcc7942_2335	0.39	-0.9
2,403,336	+	fbp	Synpcc7942_2335	0.40	-1.1
2,403,338	+	fbp	Synpcc7942_2335	0.40	-1.7
2,403,346	+	fbp	Synpcc7942_2335	0.41	-2.0
2,403,354	-				-1.0
2,403,385	+	fbp	Synpcc7942_2335	0.45	-0.6
2,403,385	+	fbp	Synpcc7942_2335	0.45	-1.5
2,403,401	-	fbp	Synpcc7942_2335	0.46	-0.4
2,403,403	+	fbp	Synpcc7942_2335	0.47	-2.2
2,403,408	+				-1.6
2,403,416	-	fbp	Synpcc7942_2335	0.48	-1.0
2,403,416	-	fbp	Synpcc7942_2335	0.48	-1.6
2,403,474	+	fbp	Synpcc7942_2335	0.53	-0.1
2,403,489	+	fbp	Synpcc7942_2335	0.55	+0.0
2,403,489	+	fbp	Synpcc7942_2335	0.55	-1.5
2,403,507	-	fbp	Synpcc7942_2335	0.57	-1.6
2,403,567	+	fbp	Synpcc7942_2335	0.62	-1.3
2,403,570	+	fbp	Synpcc7942_2335	0.63	-0.1
2,403,570	+	fbp	Synpcc7942_2335	0.63	-1.1
2,403,575	+				-1.3
2,403,578	-	fbp	Synpcc7942_2335	0.63	-0.9
2,403,578	-	fbp	Synpcc7942_2335	0.63	-1.7
2,403,583	-	fbp	Synpcc7942_2335	0.64	-1.4
2,403,588	-	fbp	Synpcc7942_2335	0.64	-3.6
2,403,614	+	fbp	Synpcc7942_2335	0.67	-2.5
2,403,615	+	fbp	Synpcc7942_2335	0.67	-1.9
2,403,623	-	fbp	Synpcc7942_2335	0.68	-0.3
2,403,676	-	fbp	Synpcc7942_2335	0.73	-0.9
2,403,696	+	fbp	Synpcc7942_2335	0.75	-1.2
2,403,725	+	fbp	Synpcc7942_2335	0.78	-0.6
2,403,725	+	fbp	Synpcc7942_2335	0.78	-1.7
2,403,733	-	fbp	Synpcc7942_2335	0.78	-1.6
2,403,745	-	fbp	Synpcc7942_2335	0.80	-2.7
2,403,803	-	fbp	Synpcc7942_2335	0.85	-1.8
2,403,814	+	fbp	Synpcc7942_2335	0.86	-1.7
2,403,822	-	fbp	Synpcc7942_2335	0.87	-1.3
2,403,822	-	fbp	Synpcc7942_2335	0.87	-2.0
2,403,835	-	fbp	Synpcc7942_2335	0.88	-1.5
2,403,842	+	fbp	Synpcc7942_2335	0.89	-1.4
2,403,842	+	fbp	Synpcc7942_2335	0.89	-3.2
2,403,842	+	fbp	Synpcc7942_2335	0.89	-0.3
2,403,842	+	fbp	Synpcc7942_2335	0.89	-2.7
2,403,842	+	fbp	Synpcc7942_2335	0.89	-0.3
2,403,850	-	fbp	Synpcc7942_2335	0.90	-2.3
2,403,850	-	fbp	Synpcc7942_2335	0.90	-3.4
2,403,850	-	fbp	Synpcc7942_2335	0.90	-1.6
2,403,850	-	fbp	Synpcc7942_2335	0.90	-1.6
2,403,850	-	fbp	Synpcc7942_2335	0.90	-1.3
2,403,850	-	fbp	Synpcc7942_2335	0.90	+0.2
2,403,850	-	fbp	Synpcc7942_2335	0.90	-2.9
2,403,850	-				-1.3
2,403,856	+				-0.2
2,403,863	+				-0.9
2,403,883	-				+0.5
2,403,895	+				+0.7
2,403,908	-				-3.6
2,403,918	+				+0.3
2,403,926	-				-1.4
2,403,926	-				-1.6
2,403,944	+				-1.6
2,403,944	+				-2.3
2,403,947	-				-1.0
2,403,952	-				-1.8
2,403,967	+				-2.1
2,404,036	+				-0.2
2,404,040	-				-1.3
2,404,044	+				-0.9
2,404,053	+				-0.0
2,404,061	-				+0.3
2,404,068	+				+2.0
2,404,076	-				-0.6
2,404,076	-				-1.3
2,404,082	+				+0.7
2,404,175	+				-1.6
2,404,176	+				+0.4
2,404,177	+				+0.5
2,404,177	+				-0.3
2,404,177	+				-1.7
2,404,177	+				+0.2
2,404,185	-				+0.4
2,404,185	-				-0.1
2,404,185	-				+0.2
2,404,196	-				+0.7
2,404,214	+				-0.6
2,404,219	+				+0.1
2,404,222	-				-0.1
2,404,224	+				-0.6
2,404,224	+				+0.6
2,404,224	+				-0.2
2,404,227	-				-0.3
2,404,227	-				+1.0
2,404,227	-				+0.4
2,404,255	-		Synpcc7942_2336	0.22	-0.0
2,404,263	+		Synpcc7942_2336	0.27	-0.4
2,404,329	+		Synpcc7942_2336	0.65	-0.4
2,404,329	+		Synpcc7942_2336	0.65	-0.6
2,404,385	+				+0.1
2,404,388	+				-0.1
2,404,395	-				+0.3
2,404,411	+				+0.0
2,404,419	-				+0.8
2,404,419	-				-1.5
2,404,419	-				-0.0
2,404,419	-				-0.5
2,404,419	-				-2.1
2,404,419	-				+0.7
2,404,437	-				+0.9
2,404,460	-				-2.1
2,404,515	+				-0.8
2,404,530	+				+1.0
2,404,558	+				+0.0
2,404,566	-				+0.4
2,404,571	+				+0.1
2,404,579	-				-1.2
2,404,580	-				-1.3
2,404,603	-				+0.8
2,404,623	-				+0.9
2,404,625	-				+0.8
2,404,628	-				+0.4
2,404,648	+				+0.0
2,404,648	+				-0.6
2,404,648	+				-0.3
2,404,656	-				+1.0
2,404,674	-				-2.2
2,404,741	-		Synpcc7942_2337	0.15	-1.1
2,404,741	-		Synpcc7942_2337	0.15	+0.8
2,404,745	+		Synpcc7942_2337	0.16	-1.1
2,404,776	+		Synpcc7942_2337	0.19	+0.3
2,404,778	+		Synpcc7942_2337	0.19	-1.4
2,404,817	-		Synpcc7942_2337	0.23	-0.9
2,404,899	-		Synpcc7942_2337	0.32	+2.5
2,404,954	-		Synpcc7942_2337	0.37	+2.0