Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1972

Experiment: Flask growth in 60 uE Light-Dark 12:12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_1970 and ama overlap by 4 nucleotidesama and Synpcc7942_1972 are separated by 50 nucleotidesSynpcc7942_1972 and Synpcc7942_1973 are separated by 93 nucleotides Synpcc7942_1970: Synpcc7942_1970 - N-acyl-L-amino acid amidohydrolase, at 2,041,038 to 2,041,484 _1970 Synpcc7942_1971: ama - Peptidase M20D, amidohydrolase, at 2,041,481 to 2,042,239 ama Synpcc7942_1972: Synpcc7942_1972 - TPR repeat, at 2,042,290 to 2,043,057 _1972 Synpcc7942_1973: Synpcc7942_1973 - mannose-1-phosphate guanyltransferase, at 2,043,151 to 2,044,320 _1973 Position (kb) 2042 2043 2044Strain fitness (log2 ratio) -3 -2 -1 0 1at 2041.413 kb on + strand, within Synpcc7942_1970at 2041.414 kb on + strand, within Synpcc7942_1970at 2041.421 kb on - strand, within Synpcc7942_1970at 2041.484 kb on + strandat 2041.507 kb on - strandat 2041.548 kb on - strandat 2041.573 kb on - strand, within amaat 2041.575 kb on + strand, within amaat 2041.583 kb on - strand, within amaat 2041.583 kb on - strand, within amaat 2041.621 kb on + strand, within amaat 2041.629 kb on - strand, within amaat 2041.633 kb on + strand, within amaat 2041.757 kb on - strand, within amaat 2041.789 kb on - strand, within amaat 2041.801 kb on - strand, within amaat 2041.815 kb on + strand, within amaat 2041.842 kb on - strand, within amaat 2041.871 kb on - strand, within amaat 2041.886 kb on + strand, within amaat 2041.886 kb on + strand, within amaat 2041.886 kb on + strand, within amaat 2041.886 kb on + strand, within amaat 2041.886 kb on + strand, within amaat 2041.886 kb on + strand, within amaat 2041.894 kb on - strand, within amaat 2041.894 kb on - strand, within amaat 2041.898 kb on + strand, within amaat 2041.898 kb on + strand, within amaat 2041.906 kb on - strand, within amaat 2041.906 kb on - strand, within amaat 2041.909 kb on + strand, within amaat 2041.916 kb on + strand, within amaat 2041.916 kb on + strand, within amaat 2041.928 kb on - strand, within amaat 2041.929 kb on - strand, within amaat 2041.949 kb on + strand, within amaat 2041.957 kb on - strand, within amaat 2041.999 kb on + strand, within amaat 2042.000 kb on - strand, within amaat 2042.007 kb on - strand, within amaat 2042.012 kb on - strand, within amaat 2042.012 kb on - strand, within amaat 2042.025 kb on + strand, within amaat 2042.049 kb on + strand, within amaat 2042.057 kb on + strand, within amaat 2042.057 kb on + strand, within amaat 2042.065 kb on - strand, within amaat 2042.065 kb on - strand, within amaat 2042.066 kb on + strand, within amaat 2042.074 kb on + strand, within amaat 2042.080 kb on + strand, within amaat 2042.085 kb on + strand, within amaat 2042.088 kb on - strand, within amaat 2042.088 kb on - strand, within amaat 2042.088 kb on - strand, within amaat 2042.143 kb on - strand, within amaat 2042.148 kb on - strand, within amaat 2042.148 kb on - strand, within amaat 2042.150 kb on + strand, within amaat 2042.158 kb on - strand, within amaat 2042.158 kb on - strand, within amaat 2042.185 kb on + strandat 2042.221 kb on + strandat 2042.221 kb on + strandat 2042.226 kb on + strandat 2042.229 kb on - strandat 2042.229 kb on - strandat 2042.229 kb on - strandat 2042.300 kb on + strandat 2042.300 kb on + strandat 2042.352 kb on + strandat 2042.362 kb on + strandat 2042.383 kb on + strand, within Synpcc7942_1972at 2042.386 kb on - strand, within Synpcc7942_1972at 2042.418 kb on - strand, within Synpcc7942_1972at 2042.430 kb on - strand, within Synpcc7942_1972at 2042.444 kb on - strand, within Synpcc7942_1972at 2042.446 kb on - strand, within Synpcc7942_1972at 2042.470 kb on - strand, within Synpcc7942_1972at 2042.496 kb on + strand, within Synpcc7942_1972at 2042.509 kb on + strand, within Synpcc7942_1972at 2042.537 kb on + strand, within Synpcc7942_1972at 2042.537 kb on + strand, within Synpcc7942_1972at 2042.545 kb on - strand, within Synpcc7942_1972at 2042.547 kb on + strand, within Synpcc7942_1972at 2042.556 kb on - strand, within Synpcc7942_1972at 2042.581 kb on + strand, within Synpcc7942_1972at 2042.589 kb on - strand, within Synpcc7942_1972at 2042.589 kb on - strand, within Synpcc7942_1972at 2042.619 kb on + strand, within Synpcc7942_1972at 2042.621 kb on - strand, within Synpcc7942_1972at 2042.642 kb on - strand, within Synpcc7942_1972at 2042.673 kb on - strand, within Synpcc7942_1972at 2042.682 kb on + strand, within Synpcc7942_1972at 2042.682 kb on + strand, within Synpcc7942_1972at 2042.682 kb on + strand, within Synpcc7942_1972at 2042.682 kb on + strand, within Synpcc7942_1972at 2042.690 kb on - strand, within Synpcc7942_1972at 2042.690 kb on - strand, within Synpcc7942_1972at 2042.690 kb on - strand, within Synpcc7942_1972at 2042.692 kb on + strand, within Synpcc7942_1972at 2042.695 kb on + strand, within Synpcc7942_1972at 2042.728 kb on + strandat 2042.731 kb on - strand, within Synpcc7942_1972at 2042.736 kb on + strand, within Synpcc7942_1972at 2042.737 kb on + strand, within Synpcc7942_1972at 2042.746 kb on + strand, within Synpcc7942_1972at 2042.753 kb on + strand, within Synpcc7942_1972at 2042.755 kb on - strand, within Synpcc7942_1972at 2042.771 kb on - strand, within Synpcc7942_1972at 2042.783 kb on - strand, within Synpcc7942_1972at 2042.794 kb on + strand, within Synpcc7942_1972at 2042.812 kb on - strand, within Synpcc7942_1972at 2042.839 kb on + strand, within Synpcc7942_1972at 2042.846 kb on - strand, within Synpcc7942_1972at 2042.887 kb on + strand, within Synpcc7942_1972at 2042.887 kb on + strand, within Synpcc7942_1972at 2042.887 kb on + strand, within Synpcc7942_1972at 2042.915 kb on - strand, within Synpcc7942_1972at 2042.915 kb on - strand, within Synpcc7942_1972at 2042.920 kb on - strand, within Synpcc7942_1972at 2042.920 kb on - strand, within Synpcc7942_1972at 2042.920 kb on - strand, within Synpcc7942_1972at 2042.920 kb on - strand, within Synpcc7942_1972at 2042.925 kb on - strand, within Synpcc7942_1972at 2042.925 kb on - strand, within Synpcc7942_1972at 2042.930 kb on + strand, within Synpcc7942_1972at 2042.940 kb on - strand, within Synpcc7942_1972at 2042.944 kb on + strand, within Synpcc7942_1972at 2042.957 kb on - strand, within Synpcc7942_1972at 2042.995 kb on - strandat 2043.021 kb on + strandat 2043.030 kb on - strandat 2043.041 kb on + strandat 2043.041 kb on + strandat 2043.149 kb on + strandat 2043.149 kb on + strandat 2043.157 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12
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2,041,413 + Synpcc7942_1970 0.84 +0.4
2,041,414 + Synpcc7942_1970 0.84 +0.7
2,041,421 - Synpcc7942_1970 0.86 +0.7
2,041,484 + +0.5
2,041,507 - +0.6
2,041,548 - +0.5
2,041,573 - ama Synpcc7942_1971 0.12 -0.8
2,041,575 + ama Synpcc7942_1971 0.12 -0.7
2,041,583 - ama Synpcc7942_1971 0.13 +0.5
2,041,583 - ama Synpcc7942_1971 0.13 +0.5
2,041,621 + ama Synpcc7942_1971 0.18 -0.3
2,041,629 - ama Synpcc7942_1971 0.19 +0.1
2,041,633 + ama Synpcc7942_1971 0.20 +0.2
2,041,757 - ama Synpcc7942_1971 0.36 +0.4
2,041,789 - ama Synpcc7942_1971 0.41 -0.6
2,041,801 - ama Synpcc7942_1971 0.42 -2.7
2,041,815 + ama Synpcc7942_1971 0.44 +0.8
2,041,842 - ama Synpcc7942_1971 0.48 +0.0
2,041,871 - ama Synpcc7942_1971 0.51 -0.6
2,041,886 + ama Synpcc7942_1971 0.53 -0.5
2,041,886 + ama Synpcc7942_1971 0.53 -0.4
2,041,886 + ama Synpcc7942_1971 0.53 +1.5
2,041,886 + ama Synpcc7942_1971 0.53 +0.2
2,041,886 + ama Synpcc7942_1971 0.53 -0.4
2,041,886 + ama Synpcc7942_1971 0.53 -2.0
2,041,894 - ama Synpcc7942_1971 0.54 +0.9
2,041,894 - ama Synpcc7942_1971 0.54 +0.4
2,041,898 + ama Synpcc7942_1971 0.55 -0.3
2,041,898 + ama Synpcc7942_1971 0.55 +0.4
2,041,906 - ama Synpcc7942_1971 0.56 +0.9
2,041,906 - ama Synpcc7942_1971 0.56 -1.0
2,041,909 + ama Synpcc7942_1971 0.56 +0.4
2,041,916 + ama Synpcc7942_1971 0.57 -1.0
2,041,916 + ama Synpcc7942_1971 0.57 +0.6
2,041,928 - ama Synpcc7942_1971 0.59 +0.3
2,041,929 - ama Synpcc7942_1971 0.59 -1.0
2,041,949 + ama Synpcc7942_1971 0.62 +1.5
2,041,957 - ama Synpcc7942_1971 0.63 -0.9
2,041,999 + ama Synpcc7942_1971 0.68 -0.2
2,042,000 - ama Synpcc7942_1971 0.68 +0.4
2,042,007 - ama Synpcc7942_1971 0.69 +0.3
2,042,012 - ama Synpcc7942_1971 0.70 -1.9
2,042,012 - ama Synpcc7942_1971 0.70 +0.5
2,042,025 + ama Synpcc7942_1971 0.72 -1.9
2,042,049 + ama Synpcc7942_1971 0.75 +1.2
2,042,057 + ama Synpcc7942_1971 0.76 +0.5
2,042,057 + ama Synpcc7942_1971 0.76 -1.0
2,042,065 - ama Synpcc7942_1971 0.77 +0.3
2,042,065 - ama Synpcc7942_1971 0.77 +1.1
2,042,066 + ama Synpcc7942_1971 0.77 -1.8
2,042,074 + ama Synpcc7942_1971 0.78 -1.6
2,042,080 + ama Synpcc7942_1971 0.79 +1.0
2,042,085 + ama Synpcc7942_1971 0.80 +1.0
2,042,088 - ama Synpcc7942_1971 0.80 -0.5
2,042,088 - ama Synpcc7942_1971 0.80 +0.1
2,042,088 - ama Synpcc7942_1971 0.80 -1.7
2,042,143 - ama Synpcc7942_1971 0.87 +1.2
2,042,148 - ama Synpcc7942_1971 0.88 -0.8
2,042,148 - ama Synpcc7942_1971 0.88 +0.7
2,042,150 + ama Synpcc7942_1971 0.88 -0.4
2,042,158 - ama Synpcc7942_1971 0.89 -0.5
2,042,158 - ama Synpcc7942_1971 0.89 -0.7
2,042,185 + -0.6
2,042,221 + +0.1
2,042,221 + +0.6
2,042,226 + +0.5
2,042,229 - -0.6
2,042,229 - +0.6
2,042,229 - +0.3
2,042,300 + +0.7
2,042,300 + +0.0
2,042,352 + -0.8
2,042,362 + -1.0
2,042,383 + Synpcc7942_1972 0.12 -0.7
2,042,386 - Synpcc7942_1972 0.12 -0.4
2,042,418 - Synpcc7942_1972 0.17 -1.2
2,042,430 - Synpcc7942_1972 0.18 -0.6
2,042,444 - Synpcc7942_1972 0.20 -0.6
2,042,446 - Synpcc7942_1972 0.20 -2.7
2,042,470 - Synpcc7942_1972 0.23 -2.1
2,042,496 + Synpcc7942_1972 0.27 -0.5
2,042,509 + Synpcc7942_1972 0.29 -0.1
2,042,537 + Synpcc7942_1972 0.32 -2.7
2,042,537 + Synpcc7942_1972 0.32 -1.0
2,042,545 - Synpcc7942_1972 0.33 -1.6
2,042,547 + Synpcc7942_1972 0.33 +0.1
2,042,556 - Synpcc7942_1972 0.35 -0.8
2,042,581 + Synpcc7942_1972 0.38 -0.9
2,042,589 - Synpcc7942_1972 0.39 +0.5
2,042,589 - Synpcc7942_1972 0.39 -2.4
2,042,619 + Synpcc7942_1972 0.43 -1.2
2,042,621 - Synpcc7942_1972 0.43 -1.4
2,042,642 - Synpcc7942_1972 0.46 +0.5
2,042,673 - Synpcc7942_1972 0.50 -1.3
2,042,682 + Synpcc7942_1972 0.51 -1.1
2,042,682 + Synpcc7942_1972 0.51 +0.2
2,042,682 + Synpcc7942_1972 0.51 -1.6
2,042,682 + Synpcc7942_1972 0.51 -0.9
2,042,690 - Synpcc7942_1972 0.52 +0.3
2,042,690 - Synpcc7942_1972 0.52 -0.2
2,042,690 - Synpcc7942_1972 0.52 -2.5
2,042,692 + Synpcc7942_1972 0.52 -1.0
2,042,695 + Synpcc7942_1972 0.53 -0.9
2,042,728 + -0.9
2,042,731 - Synpcc7942_1972 0.57 -0.6
2,042,736 + Synpcc7942_1972 0.58 -0.7
2,042,737 + Synpcc7942_1972 0.58 -0.6
2,042,746 + Synpcc7942_1972 0.59 -0.4
2,042,753 + Synpcc7942_1972 0.60 -2.1
2,042,755 - Synpcc7942_1972 0.61 -2.2
2,042,771 - Synpcc7942_1972 0.63 -2.2
2,042,783 - Synpcc7942_1972 0.64 +0.5
2,042,794 + Synpcc7942_1972 0.66 -1.0
2,042,812 - Synpcc7942_1972 0.68 -0.7
2,042,839 + Synpcc7942_1972 0.71 -2.4
2,042,846 - Synpcc7942_1972 0.72 -0.7
2,042,887 + Synpcc7942_1972 0.78 -0.9
2,042,887 + Synpcc7942_1972 0.78 -0.4
2,042,887 + Synpcc7942_1972 0.78 -2.4
2,042,915 - Synpcc7942_1972 0.81 -1.4
2,042,915 - Synpcc7942_1972 0.81 -2.3
2,042,920 - Synpcc7942_1972 0.82 -1.4
2,042,920 - Synpcc7942_1972 0.82 -2.1
2,042,920 - Synpcc7942_1972 0.82 -0.3
2,042,920 - Synpcc7942_1972 0.82 -0.0
2,042,925 - Synpcc7942_1972 0.83 -1.2
2,042,925 - Synpcc7942_1972 0.83 -2.9
2,042,930 + Synpcc7942_1972 0.83 -0.7
2,042,940 - Synpcc7942_1972 0.85 -1.0
2,042,944 + Synpcc7942_1972 0.85 +0.2
2,042,957 - Synpcc7942_1972 0.87 -1.6
2,042,995 - -0.6
2,043,021 + +0.3
2,043,030 - -0.6
2,043,041 + -0.7
2,043,041 + +0.2
2,043,149 + +0.6
2,043,149 + -0.4
2,043,157 - +1.0

Or see this region's nucleotide sequence