Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1972

Experiment: Flask growth in 60 uE Light-Dark 12:12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask growth in 60 uE Light-Dark 12:12
2,041,413	+		Synpcc7942_1970	0.84	+0.4
2,041,414	+		Synpcc7942_1970	0.84	+0.7
2,041,421	-		Synpcc7942_1970	0.86	+0.7
2,041,484	+				+0.5
2,041,507	-				+0.6
2,041,548	-				+0.5
2,041,573	-	ama	Synpcc7942_1971	0.12	-0.8
2,041,575	+	ama	Synpcc7942_1971	0.12	-0.7
2,041,583	-	ama	Synpcc7942_1971	0.13	+0.5
2,041,583	-	ama	Synpcc7942_1971	0.13	+0.5
2,041,621	+	ama	Synpcc7942_1971	0.18	-0.3
2,041,629	-	ama	Synpcc7942_1971	0.19	+0.1
2,041,633	+	ama	Synpcc7942_1971	0.20	+0.2
2,041,757	-	ama	Synpcc7942_1971	0.36	+0.4
2,041,789	-	ama	Synpcc7942_1971	0.41	-0.6
2,041,801	-	ama	Synpcc7942_1971	0.42	-2.7
2,041,815	+	ama	Synpcc7942_1971	0.44	+0.8
2,041,842	-	ama	Synpcc7942_1971	0.48	+0.0
2,041,871	-	ama	Synpcc7942_1971	0.51	-0.6
2,041,886	+	ama	Synpcc7942_1971	0.53	-0.5
2,041,886	+	ama	Synpcc7942_1971	0.53	-0.4
2,041,886	+	ama	Synpcc7942_1971	0.53	+1.5
2,041,886	+	ama	Synpcc7942_1971	0.53	+0.2
2,041,886	+	ama	Synpcc7942_1971	0.53	-0.4
2,041,886	+	ama	Synpcc7942_1971	0.53	-2.0
2,041,894	-	ama	Synpcc7942_1971	0.54	+0.9
2,041,894	-	ama	Synpcc7942_1971	0.54	+0.4
2,041,898	+	ama	Synpcc7942_1971	0.55	-0.3
2,041,898	+	ama	Synpcc7942_1971	0.55	+0.4
2,041,906	-	ama	Synpcc7942_1971	0.56	+0.9
2,041,906	-	ama	Synpcc7942_1971	0.56	-1.0
2,041,909	+	ama	Synpcc7942_1971	0.56	+0.4
2,041,916	+	ama	Synpcc7942_1971	0.57	-1.0
2,041,916	+	ama	Synpcc7942_1971	0.57	+0.6
2,041,928	-	ama	Synpcc7942_1971	0.59	+0.3
2,041,929	-	ama	Synpcc7942_1971	0.59	-1.0
2,041,949	+	ama	Synpcc7942_1971	0.62	+1.5
2,041,957	-	ama	Synpcc7942_1971	0.63	-0.9
2,041,999	+	ama	Synpcc7942_1971	0.68	-0.2
2,042,000	-	ama	Synpcc7942_1971	0.68	+0.4
2,042,007	-	ama	Synpcc7942_1971	0.69	+0.3
2,042,012	-	ama	Synpcc7942_1971	0.70	-1.9
2,042,012	-	ama	Synpcc7942_1971	0.70	+0.5
2,042,025	+	ama	Synpcc7942_1971	0.72	-1.9
2,042,049	+	ama	Synpcc7942_1971	0.75	+1.2
2,042,057	+	ama	Synpcc7942_1971	0.76	+0.5
2,042,057	+	ama	Synpcc7942_1971	0.76	-1.0
2,042,065	-	ama	Synpcc7942_1971	0.77	+0.3
2,042,065	-	ama	Synpcc7942_1971	0.77	+1.1
2,042,066	+	ama	Synpcc7942_1971	0.77	-1.8
2,042,074	+	ama	Synpcc7942_1971	0.78	-1.6
2,042,080	+	ama	Synpcc7942_1971	0.79	+1.0
2,042,085	+	ama	Synpcc7942_1971	0.80	+1.0
2,042,088	-	ama	Synpcc7942_1971	0.80	-0.5
2,042,088	-	ama	Synpcc7942_1971	0.80	+0.1
2,042,088	-	ama	Synpcc7942_1971	0.80	-1.7
2,042,143	-	ama	Synpcc7942_1971	0.87	+1.2
2,042,148	-	ama	Synpcc7942_1971	0.88	-0.8
2,042,148	-	ama	Synpcc7942_1971	0.88	+0.7
2,042,150	+	ama	Synpcc7942_1971	0.88	-0.4
2,042,158	-	ama	Synpcc7942_1971	0.89	-0.5
2,042,158	-	ama	Synpcc7942_1971	0.89	-0.7
2,042,185	+				-0.6
2,042,221	+				+0.1
2,042,221	+				+0.6
2,042,226	+				+0.5
2,042,229	-				-0.6
2,042,229	-				+0.6
2,042,229	-				+0.3
2,042,300	+				+0.7
2,042,300	+				+0.0
2,042,352	+				-0.8
2,042,362	+				-1.0
2,042,383	+		Synpcc7942_1972	0.12	-0.7
2,042,386	-		Synpcc7942_1972	0.12	-0.4
2,042,418	-		Synpcc7942_1972	0.17	-1.2
2,042,430	-		Synpcc7942_1972	0.18	-0.6
2,042,444	-		Synpcc7942_1972	0.20	-0.6
2,042,446	-		Synpcc7942_1972	0.20	-2.7
2,042,470	-		Synpcc7942_1972	0.23	-2.1
2,042,496	+		Synpcc7942_1972	0.27	-0.5
2,042,509	+		Synpcc7942_1972	0.29	-0.1
2,042,537	+		Synpcc7942_1972	0.32	-2.7
2,042,537	+		Synpcc7942_1972	0.32	-1.0
2,042,545	-		Synpcc7942_1972	0.33	-1.6
2,042,547	+		Synpcc7942_1972	0.33	+0.1
2,042,556	-		Synpcc7942_1972	0.35	-0.8
2,042,581	+		Synpcc7942_1972	0.38	-0.9
2,042,589	-		Synpcc7942_1972	0.39	+0.5
2,042,589	-		Synpcc7942_1972	0.39	-2.4
2,042,619	+		Synpcc7942_1972	0.43	-1.2
2,042,621	-		Synpcc7942_1972	0.43	-1.4
2,042,642	-		Synpcc7942_1972	0.46	+0.5
2,042,673	-		Synpcc7942_1972	0.50	-1.3
2,042,682	+		Synpcc7942_1972	0.51	-1.1
2,042,682	+		Synpcc7942_1972	0.51	+0.2
2,042,682	+		Synpcc7942_1972	0.51	-1.6
2,042,682	+		Synpcc7942_1972	0.51	-0.9
2,042,690	-		Synpcc7942_1972	0.52	+0.3
2,042,690	-		Synpcc7942_1972	0.52	-0.2
2,042,690	-		Synpcc7942_1972	0.52	-2.5
2,042,692	+		Synpcc7942_1972	0.52	-1.0
2,042,695	+		Synpcc7942_1972	0.53	-0.9
2,042,728	+				-0.9
2,042,731	-		Synpcc7942_1972	0.57	-0.6
2,042,736	+		Synpcc7942_1972	0.58	-0.7
2,042,737	+		Synpcc7942_1972	0.58	-0.6
2,042,746	+		Synpcc7942_1972	0.59	-0.4
2,042,753	+		Synpcc7942_1972	0.60	-2.1
2,042,755	-		Synpcc7942_1972	0.61	-2.2
2,042,771	-		Synpcc7942_1972	0.63	-2.2
2,042,783	-		Synpcc7942_1972	0.64	+0.5
2,042,794	+		Synpcc7942_1972	0.66	-1.0
2,042,812	-		Synpcc7942_1972	0.68	-0.7
2,042,839	+		Synpcc7942_1972	0.71	-2.4
2,042,846	-		Synpcc7942_1972	0.72	-0.7
2,042,887	+		Synpcc7942_1972	0.78	-0.9
2,042,887	+		Synpcc7942_1972	0.78	-0.4
2,042,887	+		Synpcc7942_1972	0.78	-2.4
2,042,915	-		Synpcc7942_1972	0.81	-1.4
2,042,915	-		Synpcc7942_1972	0.81	-2.3
2,042,920	-		Synpcc7942_1972	0.82	-1.4
2,042,920	-		Synpcc7942_1972	0.82	-2.1
2,042,920	-		Synpcc7942_1972	0.82	-0.3
2,042,920	-		Synpcc7942_1972	0.82	-0.0
2,042,925	-		Synpcc7942_1972	0.83	-1.2
2,042,925	-		Synpcc7942_1972	0.83	-2.9
2,042,930	+		Synpcc7942_1972	0.83	-0.7
2,042,940	-		Synpcc7942_1972	0.85	-1.0
2,042,944	+		Synpcc7942_1972	0.85	+0.2
2,042,957	-		Synpcc7942_1972	0.87	-1.6
2,042,995	-				-0.6
2,043,021	+				+0.3
2,043,030	-				-0.6
2,043,041	+				-0.7
2,043,041	+				+0.2
2,043,149	+				+0.6
2,043,149	+				-0.4
2,043,157	-				+1.0