Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1824

Experiment: Flask growth in 60 uE Light-Dark 12:12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask growth in 60 uE Light-Dark 12:12
1,894,177	+		Synpcc7942_1821	0.76	-0.9
1,894,187	+		Synpcc7942_1821	0.79	-0.1
1,894,190	-		Synpcc7942_1821	0.79	+0.4
1,894,208	-		Synpcc7942_1821	0.84	+0.2
1,894,229	+				-0.3
1,894,229	+				-1.8
1,894,229	+				+0.0
1,894,229	+				-0.9
1,894,235	-				+0.4
1,894,257	+				+0.9
1,894,266	-				-0.6
1,894,284	-				+0.6
1,894,326	+		Synpcc7942_1822	0.16	+0.3
1,894,369	+		Synpcc7942_1822	0.37	+0.4
1,894,378	+		Synpcc7942_1822	0.41	-0.1
1,894,380	-		Synpcc7942_1822	0.42	+0.2
1,894,403	-		Synpcc7942_1822	0.53	+1.9
1,894,497	+				-1.1
1,894,513	-				+1.2
1,894,521	-				-0.7
1,894,534	+				-0.1
1,894,541	-				+0.4
1,894,592	+	nblB	Synpcc7942_1823	0.14	+0.6
1,894,592	+	nblB	Synpcc7942_1823	0.14	-0.3
1,894,602	+	nblB	Synpcc7942_1823	0.15	-1.7
1,894,662	+	nblB	Synpcc7942_1823	0.25	-0.9
1,894,662	-	nblB	Synpcc7942_1823	0.25	+1.3
1,894,690	+	nblB	Synpcc7942_1823	0.29	-0.0
1,894,695	+	nblB	Synpcc7942_1823	0.30	+0.5
1,894,703	-	nblB	Synpcc7942_1823	0.31	+0.5
1,894,717	+	nblB	Synpcc7942_1823	0.33	+0.4
1,894,760	+	nblB	Synpcc7942_1823	0.39	-0.0
1,894,779	+				-1.7
1,894,787	+	nblB	Synpcc7942_1823	0.43	+0.2
1,894,804	+	nblB	Synpcc7942_1823	0.46	+1.1
1,894,812	-	nblB	Synpcc7942_1823	0.47	-3.1
1,894,812	-	nblB	Synpcc7942_1823	0.47	-2.2
1,894,858	+	nblB	Synpcc7942_1823	0.54	+0.3
1,894,858	+	nblB	Synpcc7942_1823	0.54	+0.6
1,894,883	+	nblB	Synpcc7942_1823	0.58	+0.2
1,894,883	+	nblB	Synpcc7942_1823	0.58	-2.4
1,894,913	-	nblB	Synpcc7942_1823	0.63	+0.4
1,894,949	+	nblB	Synpcc7942_1823	0.68	+0.3
1,894,959	+	nblB	Synpcc7942_1823	0.70	+1.3
1,894,993	-	nblB	Synpcc7942_1823	0.75	+0.3
1,895,014	-	nblB	Synpcc7942_1823	0.78	+0.5
1,895,120	-				-1.0
1,895,127	+				-0.3
1,895,128	-				-1.5
1,895,171	-				-0.0
1,895,190	+				-1.0
1,895,190	+				+0.0
1,895,192	+				-0.7
1,895,208	-				-1.7
1,895,230	+				-1.6
1,895,230	+		Synpcc7942_1824	0.14	-1.4
1,895,230	+		Synpcc7942_1824	0.14	-1.1
1,895,230	+		Synpcc7942_1824	0.14	-0.6
1,895,230	+		Synpcc7942_1824	0.14	+0.3
1,895,230	+		Synpcc7942_1824	0.14	-0.3
1,895,238	-		Synpcc7942_1824	0.15	-0.7
1,895,238	-		Synpcc7942_1824	0.15	-0.7
1,895,238	-		Synpcc7942_1824	0.15	-1.3
1,895,321	-		Synpcc7942_1824	0.33	-0.3
1,895,321	-				-0.2
1,895,329	+		Synpcc7942_1824	0.35	+0.5
1,895,329	+		Synpcc7942_1824	0.35	-2.5
1,895,337	-		Synpcc7942_1824	0.37	-2.0
1,895,347	+		Synpcc7942_1824	0.39	-1.6
1,895,352	+		Synpcc7942_1824	0.40	+0.2
1,895,377	-		Synpcc7942_1824	0.45	-0.9
1,895,402	+		Synpcc7942_1824	0.51	-0.7
1,895,402	+		Synpcc7942_1824	0.51	-1.7
1,895,420	+		Synpcc7942_1824	0.55	-0.9
1,895,420	+		Synpcc7942_1824	0.55	-2.2
1,895,444	+		Synpcc7942_1824	0.60	-0.3
1,895,457	-		Synpcc7942_1824	0.63	-1.6
1,895,458	+		Synpcc7942_1824	0.63	-1.3
1,895,463	+		Synpcc7942_1824	0.64	-0.8
1,895,479	+		Synpcc7942_1824	0.67	-0.5
1,895,493	-		Synpcc7942_1824	0.70	-0.7
1,895,501	-		Synpcc7942_1824	0.72	-1.1
1,895,511	-		Synpcc7942_1824	0.74	-0.4
1,895,522	+		Synpcc7942_1824	0.77	-1.4
1,895,524	+		Synpcc7942_1824	0.77	+0.7
1,895,524	+		Synpcc7942_1824	0.77	-0.9
1,895,529	+		Synpcc7942_1824	0.78	+1.5
1,895,535	-		Synpcc7942_1824	0.79	-0.4
1,895,571	+		Synpcc7942_1824	0.87	-2.3
1,895,572	+		Synpcc7942_1824	0.87	-0.7
1,895,572	+		Synpcc7942_1824	0.87	-0.3
1,895,574	-		Synpcc7942_1824	0.88	-0.4
1,895,580	-		Synpcc7942_1824	0.89	-2.1
1,895,595	-				-0.5
1,895,597	-				+0.7
1,895,597	-				-2.0
1,895,602	-				-2.6
1,895,626	+				+0.9
1,895,634	-				-2.2
1,895,637	+				-1.5
1,895,637	+				+0.4
1,895,638	+				-0.2
1,895,638	+				-0.9
1,895,646	-				-0.4
1,895,647	-				+1.0
1,895,647	-				-1.3
1,895,649	+				-0.7
1,895,718	-				-0.3
1,895,722	-				-2.3
1,895,813	+	PgsA	Synpcc7942_1825	0.20	-2.2
1,896,215	+				-0.5
1,896,229	+				+0.8
1,896,237	-				+0.3
1,896,248	+				-0.7
1,896,260	-				+0.1
1,896,284	+				-0.1
1,896,284	+				-2.9
1,896,317	-		Synpcc7942_1826	0.10	+2.1
1,896,368	-		Synpcc7942_1826	0.15	-0.1
1,896,399	-		Synpcc7942_1826	0.19	+0.2
1,896,421	+		Synpcc7942_1826	0.21	+0.2
1,896,421	+		Synpcc7942_1826	0.21	+0.5
1,896,421	+		Synpcc7942_1826	0.21	-0.3
1,896,421	+		Synpcc7942_1826	0.21	-1.1
1,896,439	-		Synpcc7942_1826	0.23	-1.1
1,896,446	+		Synpcc7942_1826	0.24	+0.5
1,896,446	+		Synpcc7942_1826	0.24	-0.0
1,896,454	-		Synpcc7942_1826	0.25	-1.1
1,896,476	-		Synpcc7942_1826	0.27	+0.2
1,896,497	+		Synpcc7942_1826	0.29	+2.1
1,896,507	+				-0.8
1,896,507	+		Synpcc7942_1826	0.30	-0.1
1,896,507	+		Synpcc7942_1826	0.30	+0.1
1,896,507	+		Synpcc7942_1826	0.30	-0.3
1,896,529	-		Synpcc7942_1826	0.33	-1.2
1,896,552	+		Synpcc7942_1826	0.35	+0.6
1,896,559	-		Synpcc7942_1826	0.36	-0.1
1,896,561	-		Synpcc7942_1826	0.36	-1.1
1,896,561	-		Synpcc7942_1826	0.36	-0.7
1,896,572	+		Synpcc7942_1826	0.37	+1.0
1,896,594	+		Synpcc7942_1826	0.39	+0.4
1,896,612	+				-0.3
1,896,612	+		Synpcc7942_1826	0.41	+0.3
1,896,620	-		Synpcc7942_1826	0.42	+0.6
1,896,627	+		Synpcc7942_1826	0.43	-0.2