Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1767

Experiment: Flask growth in 60 uE Light-Dark 12:12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask growth in 60 uE Light-Dark 12:12
1,833,166	-	cydB	Synpcc7942_1766	0.16	-0.9
1,833,206	-	cydB	Synpcc7942_1766	0.20	-1.9
1,833,309	+	cydB	Synpcc7942_1766	0.30	-1.6
1,833,347	+	cydB	Synpcc7942_1766	0.34	-0.6
1,833,392	-	cydB	Synpcc7942_1766	0.38	-3.1
1,833,393	-	cydB	Synpcc7942_1766	0.38	-1.3
1,833,395	-	cydB	Synpcc7942_1766	0.38	-1.5
1,833,411	+	cydB	Synpcc7942_1766	0.40	-2.2
1,833,428	-				+1.0
1,833,443	-	cydB	Synpcc7942_1766	0.43	-1.1
1,833,448	+	cydB	Synpcc7942_1766	0.44	-1.2
1,833,459	+	cydB	Synpcc7942_1766	0.45	-1.0
1,833,459	+	cydB	Synpcc7942_1766	0.45	-2.5
1,833,459	+	cydB	Synpcc7942_1766	0.45	+0.2
1,833,467	-	cydB	Synpcc7942_1766	0.45	-3.3
1,833,467	-	cydB	Synpcc7942_1766	0.45	-1.5
1,833,467	-	cydB	Synpcc7942_1766	0.45	-1.0
1,833,502	+	cydB	Synpcc7942_1766	0.49	-1.7
1,833,510	-	cydB	Synpcc7942_1766	0.50	-0.6
1,833,523	-	cydB	Synpcc7942_1766	0.51	-1.6
1,833,533	-	cydB	Synpcc7942_1766	0.52	-1.2
1,833,533	-	cydB	Synpcc7942_1766	0.52	-0.6
1,833,545	-	cydB	Synpcc7942_1766	0.53	-3.5
1,833,573	+	cydB	Synpcc7942_1766	0.56	+0.2
1,833,822	-	cydB	Synpcc7942_1766	0.80	-1.6
1,834,049	-				+0.3
1,834,058	-				-2.6
1,834,076	+				+0.3
1,834,076	+				-1.5
1,834,076	+				-1.5
1,834,076	+				+0.7
1,834,076	+				-0.5
1,834,084	-				-0.2
1,834,084	-				+0.4
1,834,120	-				+0.1
1,834,169	-				-1.3
1,834,191	-				-2.0
1,834,193	+				-1.2
1,834,198	-				-2.4
1,834,198	-				-3.1
1,834,201	-				-2.5
1,834,201	-				-0.6
1,834,208	-				-0.7
1,834,252	+	cydA	Synpcc7942_1767	0.12	-0.8
1,834,257	+	cydA	Synpcc7942_1767	0.13	-1.2
1,834,257	+	cydA	Synpcc7942_1767	0.13	-1.1
1,834,265	-	cydA	Synpcc7942_1767	0.13	-2.0
1,834,265	-	cydA	Synpcc7942_1767	0.13	+1.4
1,834,265	-	cydA	Synpcc7942_1767	0.13	-0.8
1,834,301	-	cydA	Synpcc7942_1767	0.16	-0.6
1,834,350	-	cydA	Synpcc7942_1767	0.19	-2.4
1,834,355	+	cydA	Synpcc7942_1767	0.20	-1.8
1,834,361	+	cydA	Synpcc7942_1767	0.20	-0.6
1,834,363	-	cydA	Synpcc7942_1767	0.20	-2.3
1,834,377	+	cydA	Synpcc7942_1767	0.21	-4.5
1,834,389	+	cydA	Synpcc7942_1767	0.22	-1.9
1,834,407	-	cydA	Synpcc7942_1767	0.23	-0.8
1,834,429	+	cydA	Synpcc7942_1767	0.25	-1.4
1,834,443	+	cydA	Synpcc7942_1767	0.26	-1.5
1,834,446	-	cydA	Synpcc7942_1767	0.26	-0.9
1,834,468	-	cydA	Synpcc7942_1767	0.28	-4.1
1,834,475	-	cydA	Synpcc7942_1767	0.28	-0.4
1,834,482	+	cydA	Synpcc7942_1767	0.29	-2.8
1,834,483	-	cydA	Synpcc7942_1767	0.29	+0.3
1,834,483	-	cydA	Synpcc7942_1767	0.29	-0.5
1,834,483	-	cydA	Synpcc7942_1767	0.29	-1.3
1,834,495	-	cydA	Synpcc7942_1767	0.30	-1.7
1,834,539	-	cydA	Synpcc7942_1767	0.33	-2.6
1,834,539	-	cydA	Synpcc7942_1767	0.33	-1.1
1,834,540	-				-1.6
1,834,625	+	cydA	Synpcc7942_1767	0.39	-1.2
1,834,636	+	cydA	Synpcc7942_1767	0.39	-1.1
1,834,636	+	cydA	Synpcc7942_1767	0.39	-1.1
1,834,636	+	cydA	Synpcc7942_1767	0.39	-1.5
1,834,636	+	cydA	Synpcc7942_1767	0.39	-1.2
1,834,636	+	cydA	Synpcc7942_1767	0.39	+0.4
1,834,644	-	cydA	Synpcc7942_1767	0.40	+0.2
1,834,644	-	cydA	Synpcc7942_1767	0.40	-2.2
1,834,644	-	cydA	Synpcc7942_1767	0.40	-1.6
1,834,644	-	cydA	Synpcc7942_1767	0.40	-2.5
1,834,644	-	cydA	Synpcc7942_1767	0.40	-1.0
1,834,646	+	cydA	Synpcc7942_1767	0.40	-1.3
1,834,646	+	cydA	Synpcc7942_1767	0.40	-2.1
1,834,654	-	cydA	Synpcc7942_1767	0.41	-2.5
1,834,665	-	cydA	Synpcc7942_1767	0.42	-0.6
1,834,698	+	cydA	Synpcc7942_1767	0.44	-1.2
1,834,729	-	cydA	Synpcc7942_1767	0.46	-2.0
1,834,736	+	cydA	Synpcc7942_1767	0.47	-1.5
1,834,756	+	cydA	Synpcc7942_1767	0.48	-1.1
1,834,882	+	cydA	Synpcc7942_1767	0.57	-0.6
1,834,882	+	cydA	Synpcc7942_1767	0.57	-2.1
1,834,882	+	cydA	Synpcc7942_1767	0.57	-0.1
1,834,882	+	cydA	Synpcc7942_1767	0.57	-0.7
1,834,882	+	cydA	Synpcc7942_1767	0.57	-0.3
1,834,882	+	cydA	Synpcc7942_1767	0.57	-1.1
1,834,889	+	cydA	Synpcc7942_1767	0.57	-1.3
1,834,890	-	cydA	Synpcc7942_1767	0.57	+0.1
1,834,973	+	cydA	Synpcc7942_1767	0.63	-0.8
1,834,974	-	cydA	Synpcc7942_1767	0.63	-2.3
1,834,981	-	cydA	Synpcc7942_1767	0.64	-2.4
1,834,996	+	cydA	Synpcc7942_1767	0.65	-1.4
1,835,011	-	cydA	Synpcc7942_1767	0.66	-2.2
1,835,024	+	cydA	Synpcc7942_1767	0.67	-2.7
1,835,139	+	cydA	Synpcc7942_1767	0.75	-2.3
1,835,245	+	cydA	Synpcc7942_1767	0.83	+0.2
1,835,246	+	cydA	Synpcc7942_1767	0.83	-2.7
1,835,246	+	cydA	Synpcc7942_1767	0.83	-1.5
1,835,256	+	cydA	Synpcc7942_1767	0.83	-2.0
1,835,288	+	cydA	Synpcc7942_1767	0.86	-0.7
1,835,290	+	cydA	Synpcc7942_1767	0.86	-1.3
1,835,316	-	cydA	Synpcc7942_1767	0.88	-0.2
1,835,358	+				-1.4
1,835,377	+				+0.3
1,835,385	-				-1.2
1,835,423	-				+0.4
1,835,431	+				-3.6
1,835,436	+				-1.8
1,835,444	-				-0.8
1,835,453	+				-2.5
1,835,549	+				-0.7
1,835,564	+				+0.4
1,835,576	+				-0.4
1,835,576	+				-1.3
1,835,578	+				-0.7
1,835,579	-				+0.1
1,835,586	-				+0.2
1,835,588	+				-0.9
1,835,596	-				+0.8
1,835,597	+				-0.2
1,835,605	-				+0.5
1,835,627	+				+1.4
1,835,665	-				+2.1
1,835,665	-				+0.6
1,835,671	+				-0.6
1,835,677	+				+1.5
1,835,677	+				+2.6
1,835,685	-		Synpcc7942_1768	0.11	+1.4
1,835,685	-		Synpcc7942_1768	0.11	+2.2
1,835,685	-		Synpcc7942_1768	0.11	+0.9
1,835,690	+		Synpcc7942_1768	0.12	+2.2
1,835,705	+		Synpcc7942_1768	0.13	+0.4
1,835,713	-		Synpcc7942_1768	0.14	+2.0
1,835,715	+		Synpcc7942_1768	0.15	+2.2
1,835,723	-		Synpcc7942_1768	0.16	+3.1
1,835,723	-		Synpcc7942_1768	0.16	+2.6
1,835,726	+		Synpcc7942_1768	0.16	+0.3
1,835,726	+		Synpcc7942_1768	0.16	+2.3
1,835,750	+		Synpcc7942_1768	0.19	+2.1
1,835,750	+		Synpcc7942_1768	0.19	-1.7
1,835,750	+		Synpcc7942_1768	0.19	+0.8
1,835,750	+		Synpcc7942_1768	0.19	+2.2
1,835,756	-		Synpcc7942_1768	0.20	+1.6
1,835,758	+		Synpcc7942_1768	0.20	+2.2
1,835,758	+		Synpcc7942_1768	0.20	+1.8
1,835,758	-		Synpcc7942_1768	0.20	+2.5
1,835,758	-		Synpcc7942_1768	0.20	+2.2
1,835,758	-		Synpcc7942_1768	0.20	+1.9
1,835,758	-		Synpcc7942_1768	0.20	+1.6
1,835,774	+		Synpcc7942_1768	0.22	+2.2
1,835,784	+		Synpcc7942_1768	0.23	+2.8
1,835,790	-		Synpcc7942_1768	0.24	+2.1
1,835,792	+		Synpcc7942_1768	0.24	+0.9
1,835,792	-		Synpcc7942_1768	0.24	-1.5
1,835,792	-		Synpcc7942_1768	0.24	+0.8
1,835,793	+		Synpcc7942_1768	0.24	+2.7
1,835,798	+		Synpcc7942_1768	0.25	+2.4
1,835,800	-		Synpcc7942_1768	0.25	+2.3
1,835,801	-		Synpcc7942_1768	0.25	+2.0
1,835,829	+		Synpcc7942_1768	0.29	+0.0
1,835,829	+		Synpcc7942_1768	0.29	+2.7
1,835,834	+		Synpcc7942_1768	0.29	+2.0
1,835,834	+		Synpcc7942_1768	0.29	+0.9
1,835,837	-		Synpcc7942_1768	0.30	+2.7
1,835,837	-		Synpcc7942_1768	0.30	+2.5
1,835,855	-				+2.3
1,835,865	+		Synpcc7942_1768	0.33	+2.4
1,835,868	-		Synpcc7942_1768	0.33	+2.3
1,835,875	+		Synpcc7942_1768	0.34	+2.3
1,835,883	+		Synpcc7942_1768	0.35	+2.7
1,835,884	-		Synpcc7942_1768	0.35	+2.7
1,835,891	-		Synpcc7942_1768	0.36	+1.9
1,835,891	-		Synpcc7942_1768	0.36	+1.7
1,835,916	-		Synpcc7942_1768	0.39	+2.2
1,835,926	+		Synpcc7942_1768	0.41	+1.8
1,835,953	+		Synpcc7942_1768	0.44	+2.3
1,835,979	-		Synpcc7942_1768	0.47	+1.4
1,835,979	-		Synpcc7942_1768	0.47	+2.9
1,835,979	-		Synpcc7942_1768	0.47	+3.1
1,835,979	-		Synpcc7942_1768	0.47	+2.2
1,835,989	-		Synpcc7942_1768	0.48	+0.7
1,836,048	+		Synpcc7942_1768	0.56	+1.8
1,836,048	+		Synpcc7942_1768	0.56	+2.7
1,836,056	-		Synpcc7942_1768	0.57	+2.4
1,836,056	-		Synpcc7942_1768	0.57	+2.1
1,836,056	-		Synpcc7942_1768	0.57	+2.6
1,836,072	+		Synpcc7942_1768	0.59	+1.8
1,836,076	-		Synpcc7942_1768	0.59	+1.5
1,836,078	+		Synpcc7942_1768	0.59	+2.8
1,836,091	-		Synpcc7942_1768	0.61	+1.6
1,836,096	+		Synpcc7942_1768	0.62	+1.3
1,836,104	-		Synpcc7942_1768	0.62	+2.3
1,836,119	+		Synpcc7942_1768	0.64	+0.3
1,836,124	+		Synpcc7942_1768	0.65	+2.3
1,836,126	+		Synpcc7942_1768	0.65	+2.3
1,836,127	-		Synpcc7942_1768	0.65	+2.7
1,836,132	-		Synpcc7942_1768	0.66	+2.8
1,836,134	-		Synpcc7942_1768	0.66	+1.5
1,836,134	-		Synpcc7942_1768	0.66	+2.9
1,836,134	-		Synpcc7942_1768	0.66	+1.0
1,836,164	+		Synpcc7942_1768	0.70	+1.7
1,836,164	+		Synpcc7942_1768	0.70	+2.0
1,836,164	+		Synpcc7942_1768	0.70	+2.8
1,836,164	+		Synpcc7942_1768	0.70	+2.4
1,836,164	+		Synpcc7942_1768	0.70	-0.6
1,836,164	+		Synpcc7942_1768	0.70	-0.0
1,836,164	+		Synpcc7942_1768	0.70	-0.5
1,836,172	-		Synpcc7942_1768	0.71	+2.0
1,836,172	-		Synpcc7942_1768	0.71	+2.4
1,836,172	-		Synpcc7942_1768	0.71	+1.9
1,836,172	-		Synpcc7942_1768	0.71	+1.7
1,836,195	+		Synpcc7942_1768	0.74	+3.3
1,836,213	+		Synpcc7942_1768	0.76	+1.5
1,836,213	+		Synpcc7942_1768	0.76	+3.3
1,836,213	+		Synpcc7942_1768	0.76	+1.0
1,836,218	+		Synpcc7942_1768	0.77	+1.9
1,836,218	+		Synpcc7942_1768	0.77	+1.9
1,836,221	-		Synpcc7942_1768	0.77	+1.7
1,836,222	-		Synpcc7942_1768	0.77	+1.4
1,836,226	-		Synpcc7942_1768	0.77	+2.1
1,836,229	+		Synpcc7942_1768	0.78	+1.7
1,836,264	-		Synpcc7942_1768	0.82	+1.6
1,836,291	-		Synpcc7942_1768	0.85	+0.7
1,836,319	-		Synpcc7942_1768	0.89	+1.7
1,836,320	+		Synpcc7942_1768	0.89	+2.5
1,836,328	+				+2.2
1,836,340	+				+2.3
1,836,352	+				+2.8
1,836,355	-				+2.2
1,836,360	-				+2.6
1,836,386	-				-0.4
1,836,390	+				-1.2
1,836,398	-				-1.3
1,836,398	-				-2.1
1,836,409	+				-0.9
1,836,414	+				-2.0
1,836,417	-				-1.2
1,836,422	-				-0.7
1,836,467	-		Synpcc7942_1769	0.15	-2.5
1,836,478	+		Synpcc7942_1769	0.18	-1.1
1,836,486	-		Synpcc7942_1769	0.20	-1.4