Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1766

Experiment: Flask growth in 60 uE Light-Dark 12:12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask growth in 60 uE Light-Dark 12:12
1,832,005	+		Synpcc7942_1764	0.39	+0.6
1,832,010	+		Synpcc7942_1764	0.40	-0.4
1,832,010	+		Synpcc7942_1764	0.40	-0.1
1,832,010	+		Synpcc7942_1764	0.40	-1.1
1,832,011	+		Synpcc7942_1764	0.40	-1.4
1,832,051	+		Synpcc7942_1764	0.51	-1.0
1,832,051	-		Synpcc7942_1764	0.51	+0.5
1,832,052	-		Synpcc7942_1764	0.51	-1.1
1,832,059	-		Synpcc7942_1764	0.53	-1.3
1,832,066	+		Synpcc7942_1764	0.55	-1.7
1,832,066	+		Synpcc7942_1764	0.55	+0.5
1,832,074	-		Synpcc7942_1764	0.57	-1.1
1,832,074	-				-0.3
1,832,074	-		Synpcc7942_1764	0.57	-2.2
1,832,074	-		Synpcc7942_1764	0.57	-0.0
1,832,074	-		Synpcc7942_1764	0.57	+0.6
1,832,089	+		Synpcc7942_1764	0.62	+0.2
1,832,106	+		Synpcc7942_1764	0.66	+1.0
1,832,106	+		Synpcc7942_1764	0.66	+0.3
1,832,205	-				-1.5
1,832,232	-				+0.2
1,832,242	+				-1.1
1,832,250	-				+0.3
1,832,262	-				+0.1
1,832,291	+				-0.2
1,832,303	-				-0.5
1,832,359	+		Synpcc7942_1765	0.11	-1.0
1,832,367	-		Synpcc7942_1765	0.13	+0.6
1,832,367	-		Synpcc7942_1765	0.13	+0.7
1,832,398	-		Synpcc7942_1765	0.19	-1.2
1,832,419	+		Synpcc7942_1765	0.23	-1.0
1,832,439	+		Synpcc7942_1765	0.27	-1.0
1,832,489	+		Synpcc7942_1765	0.37	+0.5
1,832,489	+		Synpcc7942_1765	0.37	+0.5
1,832,497	-		Synpcc7942_1765	0.38	-0.6
1,832,589	-		Synpcc7942_1765	0.57	-0.0
1,832,662	-		Synpcc7942_1765	0.71	+0.3
1,832,675	-		Synpcc7942_1765	0.74	-0.1
1,832,710	-		Synpcc7942_1765	0.81	+0.1
1,832,713	-		Synpcc7942_1765	0.81	-1.0
1,832,764	+				+1.1
1,832,768	+				+0.3
1,832,792	+				-0.3
1,832,811	+				-0.4
1,832,815	+				-0.4
1,832,825	-				+0.1
1,832,835	+				-0.1
1,832,843	-				+0.8
1,832,848	-				-1.0
1,832,896	+				-0.5
1,832,922	-				+1.9
1,832,932	-				-0.5
1,832,969	+				+1.2
1,832,982	+				+0.1
1,832,982	+				-1.0
1,832,990	-				+1.2
1,832,990	-				-0.3
1,833,003	-				+0.5
1,833,166	-	cydB	Synpcc7942_1766	0.16	-0.9
1,833,206	-	cydB	Synpcc7942_1766	0.20	-1.9
1,833,309	+	cydB	Synpcc7942_1766	0.30	-1.6
1,833,347	+	cydB	Synpcc7942_1766	0.34	-0.6
1,833,392	-	cydB	Synpcc7942_1766	0.38	-3.1
1,833,393	-	cydB	Synpcc7942_1766	0.38	-1.3
1,833,395	-	cydB	Synpcc7942_1766	0.38	-1.5
1,833,411	+	cydB	Synpcc7942_1766	0.40	-2.2
1,833,428	-				+1.0
1,833,443	-	cydB	Synpcc7942_1766	0.43	-1.1
1,833,448	+	cydB	Synpcc7942_1766	0.44	-1.2
1,833,459	+	cydB	Synpcc7942_1766	0.45	-1.0
1,833,459	+	cydB	Synpcc7942_1766	0.45	-2.5
1,833,459	+	cydB	Synpcc7942_1766	0.45	+0.2
1,833,467	-	cydB	Synpcc7942_1766	0.45	-3.3
1,833,467	-	cydB	Synpcc7942_1766	0.45	-1.5
1,833,467	-	cydB	Synpcc7942_1766	0.45	-1.0
1,833,502	+	cydB	Synpcc7942_1766	0.49	-1.7
1,833,510	-	cydB	Synpcc7942_1766	0.50	-0.6
1,833,523	-	cydB	Synpcc7942_1766	0.51	-1.6
1,833,533	-	cydB	Synpcc7942_1766	0.52	-1.2
1,833,533	-	cydB	Synpcc7942_1766	0.52	-0.6
1,833,545	-	cydB	Synpcc7942_1766	0.53	-3.5
1,833,573	+	cydB	Synpcc7942_1766	0.56	+0.2
1,833,822	-	cydB	Synpcc7942_1766	0.80	-1.6
1,834,049	-				+0.3
1,834,058	-				-2.6
1,834,076	+				+0.3
1,834,076	+				-1.5
1,834,076	+				-1.5
1,834,076	+				+0.7
1,834,076	+				-0.5
1,834,084	-				-0.2
1,834,084	-				+0.4
1,834,120	-				+0.1
1,834,169	-				-1.3
1,834,191	-				-2.0
1,834,193	+				-1.2
1,834,198	-				-2.4
1,834,198	-				-3.1
1,834,201	-				-2.5
1,834,201	-				-0.6
1,834,208	-				-0.7
1,834,252	+	cydA	Synpcc7942_1767	0.12	-0.8
1,834,257	+	cydA	Synpcc7942_1767	0.13	-1.2
1,834,257	+	cydA	Synpcc7942_1767	0.13	-1.1
1,834,265	-	cydA	Synpcc7942_1767	0.13	-2.0
1,834,265	-	cydA	Synpcc7942_1767	0.13	+1.4
1,834,265	-	cydA	Synpcc7942_1767	0.13	-0.8
1,834,301	-	cydA	Synpcc7942_1767	0.16	-0.6
1,834,350	-	cydA	Synpcc7942_1767	0.19	-2.4
1,834,355	+	cydA	Synpcc7942_1767	0.20	-1.8
1,834,361	+	cydA	Synpcc7942_1767	0.20	-0.6
1,834,363	-	cydA	Synpcc7942_1767	0.20	-2.3
1,834,377	+	cydA	Synpcc7942_1767	0.21	-4.5
1,834,389	+	cydA	Synpcc7942_1767	0.22	-1.9
1,834,407	-	cydA	Synpcc7942_1767	0.23	-0.8
1,834,429	+	cydA	Synpcc7942_1767	0.25	-1.4
1,834,443	+	cydA	Synpcc7942_1767	0.26	-1.5
1,834,446	-	cydA	Synpcc7942_1767	0.26	-0.9
1,834,468	-	cydA	Synpcc7942_1767	0.28	-4.1
1,834,475	-	cydA	Synpcc7942_1767	0.28	-0.4
1,834,482	+	cydA	Synpcc7942_1767	0.29	-2.8
1,834,483	-	cydA	Synpcc7942_1767	0.29	+0.3
1,834,483	-	cydA	Synpcc7942_1767	0.29	-0.5
1,834,483	-	cydA	Synpcc7942_1767	0.29	-1.3
1,834,495	-	cydA	Synpcc7942_1767	0.30	-1.7
1,834,539	-	cydA	Synpcc7942_1767	0.33	-2.6
1,834,539	-	cydA	Synpcc7942_1767	0.33	-1.1
1,834,540	-				-1.6
1,834,625	+	cydA	Synpcc7942_1767	0.39	-1.2
1,834,636	+	cydA	Synpcc7942_1767	0.39	-1.1
1,834,636	+	cydA	Synpcc7942_1767	0.39	-1.1
1,834,636	+	cydA	Synpcc7942_1767	0.39	-1.5
1,834,636	+	cydA	Synpcc7942_1767	0.39	-1.2
1,834,636	+	cydA	Synpcc7942_1767	0.39	+0.4
1,834,644	-	cydA	Synpcc7942_1767	0.40	+0.2
1,834,644	-	cydA	Synpcc7942_1767	0.40	-2.2
1,834,644	-	cydA	Synpcc7942_1767	0.40	-1.6
1,834,644	-	cydA	Synpcc7942_1767	0.40	-2.5
1,834,644	-	cydA	Synpcc7942_1767	0.40	-1.0
1,834,646	+	cydA	Synpcc7942_1767	0.40	-1.3
1,834,646	+	cydA	Synpcc7942_1767	0.40	-2.1
1,834,654	-	cydA	Synpcc7942_1767	0.41	-2.5
1,834,665	-	cydA	Synpcc7942_1767	0.42	-0.6
1,834,698	+	cydA	Synpcc7942_1767	0.44	-1.2
1,834,729	-	cydA	Synpcc7942_1767	0.46	-2.0
1,834,736	+	cydA	Synpcc7942_1767	0.47	-1.5
1,834,756	+	cydA	Synpcc7942_1767	0.48	-1.1
1,834,882	+	cydA	Synpcc7942_1767	0.57	-0.6
1,834,882	+	cydA	Synpcc7942_1767	0.57	-2.1
1,834,882	+	cydA	Synpcc7942_1767	0.57	-0.1
1,834,882	+	cydA	Synpcc7942_1767	0.57	-0.7
1,834,882	+	cydA	Synpcc7942_1767	0.57	-0.3
1,834,882	+	cydA	Synpcc7942_1767	0.57	-1.1
1,834,889	+	cydA	Synpcc7942_1767	0.57	-1.3
1,834,890	-	cydA	Synpcc7942_1767	0.57	+0.1
1,834,973	+	cydA	Synpcc7942_1767	0.63	-0.8
1,834,974	-	cydA	Synpcc7942_1767	0.63	-2.3
1,834,981	-	cydA	Synpcc7942_1767	0.64	-2.4
1,834,996	+	cydA	Synpcc7942_1767	0.65	-1.4
1,835,011	-	cydA	Synpcc7942_1767	0.66	-2.2
1,835,024	+	cydA	Synpcc7942_1767	0.67	-2.7