Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1716

Experiment: Flask growth in 60 uE Light-Dark 12:12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask growth in 60 uE Light-Dark 12:12
1,782,987	+	metX	Synpcc7942_1714	0.76	+0.8
1,782,995	-	metX	Synpcc7942_1714	0.77	+0.5
1,783,007	-	metX	Synpcc7942_1714	0.78	-0.1
1,783,007	-	metX	Synpcc7942_1714	0.78	-0.7
1,783,011	+	metX	Synpcc7942_1714	0.78	+0.5
1,783,024	-	metX	Synpcc7942_1714	0.79	+0.0
1,783,032	-	metX	Synpcc7942_1714	0.80	+0.8
1,783,034	+	metX	Synpcc7942_1714	0.80	-2.8
1,783,037	-	metX	Synpcc7942_1714	0.81	+1.0
1,783,042	-	metX	Synpcc7942_1714	0.81	-0.8
1,783,042	-	metX	Synpcc7942_1714	0.81	+0.8
1,783,057	-	metX	Synpcc7942_1714	0.83	-1.0
1,783,067	-	metX	Synpcc7942_1714	0.84	-1.4
1,783,080	-	metX	Synpcc7942_1714	0.85	+0.0
1,783,118	+	metX	Synpcc7942_1714	0.89	-0.8
1,783,144	-				+0.5
1,783,186	-				+1.6
1,783,203	+				+1.3
1,783,209	+				+1.2
1,783,256	-				-0.1
1,783,265	-				+0.3
1,783,937	+				-0.2
1,783,944	+				+0.0
1,783,944	+				-2.3
1,783,963	+				-0.9
1,783,971	-				-1.1
1,783,993	-				-1.9
1,783,995	+				-2.3
1,783,995	+				-0.7
1,783,995	+				-2.1
1,784,003	-				+1.4
1,784,014	+				-1.9
1,784,014	+				-1.2
1,784,022	-				-2.4
1,784,067	+				-1.0
1,784,067	+				-2.2
1,784,075	-				-3.6
1,784,075	-				-1.0
1,784,076	-				-0.1
1,784,102	+				-0.3
1,784,110	-				-1.6
1,784,200	-				-0.9
1,784,221	-				-1.0
1,784,371	-		Synpcc7942_1716	0.12	-2.8
1,784,451	+		Synpcc7942_1716	0.14	-1.3
1,784,452	+		Synpcc7942_1716	0.14	-2.0
1,784,492	-		Synpcc7942_1716	0.15	-2.0
1,784,527	+		Synpcc7942_1716	0.16	-1.4
1,784,588	+		Synpcc7942_1716	0.17	-1.3
1,784,664	+		Synpcc7942_1716	0.20	-0.2
1,784,692	+		Synpcc7942_1716	0.20	-1.4
1,784,770	+		Synpcc7942_1716	0.22	-1.4
1,784,789	-		Synpcc7942_1716	0.23	-2.4
1,784,822	+		Synpcc7942_1716	0.24	-2.0
1,784,844	-		Synpcc7942_1716	0.24	-0.7
1,784,864	-		Synpcc7942_1716	0.25	-1.7
1,784,865	-		Synpcc7942_1716	0.25	-2.3
1,784,882	+		Synpcc7942_1716	0.25	-2.2
1,784,925	-		Synpcc7942_1716	0.27	-1.4
1,784,938	+		Synpcc7942_1716	0.27	-0.1
1,784,946	-		Synpcc7942_1716	0.27	-1.4
1,785,011	+		Synpcc7942_1716	0.29	-1.7
1,785,021	+		Synpcc7942_1716	0.29	-0.2
1,785,081	+		Synpcc7942_1716	0.31	-2.1
1,785,081	+				-1.3
1,785,115	-		Synpcc7942_1716	0.32	-0.6
1,785,129	+		Synpcc7942_1716	0.32	+1.0
1,785,129	+		Synpcc7942_1716	0.32	-1.1
1,785,137	-		Synpcc7942_1716	0.32	-1.4
1,785,198	+		Synpcc7942_1716	0.34	-0.7
1,785,208	-		Synpcc7942_1716	0.34	-1.4
1,785,298	-		Synpcc7942_1716	0.37	-1.7
1,785,301	-		Synpcc7942_1716	0.37	-0.1
1,785,312	-		Synpcc7942_1716	0.37	-1.1
1,785,384	+		Synpcc7942_1716	0.39	-1.4
1,785,392	-		Synpcc7942_1716	0.39	-1.0
1,785,392	-		Synpcc7942_1716	0.39	-0.9
1,785,409	+		Synpcc7942_1716	0.40	-2.5
1,785,419	+		Synpcc7942_1716	0.40	-1.5
1,785,457	-		Synpcc7942_1716	0.41	-1.5
1,785,507	-		Synpcc7942_1716	0.42	-2.0
1,785,660	-		Synpcc7942_1716	0.46	-2.0
1,785,782	+		Synpcc7942_1716	0.50	-1.1
1,785,924	-		Synpcc7942_1716	0.53	-0.8
1,786,101	+		Synpcc7942_1716	0.58	-1.4
1,786,127	+		Synpcc7942_1716	0.59	-1.0
1,786,142	-		Synpcc7942_1716	0.59	-3.4
1,786,272	+		Synpcc7942_1716	0.63	-1.0
1,786,380	+		Synpcc7942_1716	0.66	-0.2
1,786,383	-		Synpcc7942_1716	0.66	-1.6
1,786,632	+		Synpcc7942_1716	0.72	-1.2
1,786,650	-		Synpcc7942_1716	0.73	-0.3
1,786,651	-		Synpcc7942_1716	0.73	-1.1
1,786,657	-		Synpcc7942_1716	0.73	-1.3
1,786,698	-		Synpcc7942_1716	0.74	-2.1
1,786,728	-		Synpcc7942_1716	0.75	-1.7
1,786,748	+		Synpcc7942_1716	0.76	-0.1
1,786,798	-		Synpcc7942_1716	0.77	-1.2
1,786,855	+		Synpcc7942_1716	0.78	-0.6
1,786,860	+		Synpcc7942_1716	0.79	-2.4
1,786,861	+		Synpcc7942_1716	0.79	-4.9
1,786,861	+		Synpcc7942_1716	0.79	-0.6
1,786,861	+		Synpcc7942_1716	0.79	-1.3
1,786,861	+		Synpcc7942_1716	0.79	-1.8
1,786,861	+		Synpcc7942_1716	0.79	-2.4
1,786,861	+		Synpcc7942_1716	0.79	-2.9
1,786,861	+		Synpcc7942_1716	0.79	-1.5
1,786,869	-		Synpcc7942_1716	0.79	-1.4
1,786,887	-		Synpcc7942_1716	0.79	-2.5
1,786,903	+		Synpcc7942_1716	0.80	-2.1
1,786,917	-		Synpcc7942_1716	0.80	-2.3
1,786,938	+		Synpcc7942_1716	0.81	-2.0
1,786,938	+		Synpcc7942_1716	0.81	-1.7
1,786,946	-		Synpcc7942_1716	0.81	-2.4
1,786,959	+		Synpcc7942_1716	0.81	-2.3
1,786,960	-				-0.9
1,787,043	-		Synpcc7942_1716	0.84	-1.9
1,787,083	+		Synpcc7942_1716	0.85	-2.6
1,787,084	+		Synpcc7942_1716	0.85	-2.5
1,787,104	-		Synpcc7942_1716	0.85	+1.0
1,787,135	+		Synpcc7942_1716	0.86	-1.0
1,787,154	-		Synpcc7942_1716	0.86	-1.8
1,787,156	-		Synpcc7942_1716	0.87	-2.1
1,787,157	-		Synpcc7942_1716	0.87	-1.2
1,787,159	+		Synpcc7942_1716	0.87	-1.2
1,787,159	+		Synpcc7942_1716	0.87	-2.8
1,787,160	-		Synpcc7942_1716	0.87	-1.2
1,787,233	-		Synpcc7942_1716	0.89	-1.4
1,787,295	-				-0.8
1,787,322	+				-2.0
1,787,331	-				-1.4
1,787,340	+				-1.2
1,787,341	+				-2.0
1,787,371	+				-0.2
1,787,382	+				-1.7
1,787,511	+				-1.4
1,787,517	+				-2.5
1,787,518	-				-2.2
1,787,555	+				-1.1
1,787,569	-				-0.6
1,787,648	-				-1.3
1,787,648	-				+0.0
1,787,648	-				-2.1
1,787,648	-				-2.3
1,787,692	-				-1.6
1,787,730	-				-0.7
1,787,777	-				-0.2
1,787,955	-	glcF	Synpcc7942_1717	0.18	+0.2
1,787,978	+	glcF	Synpcc7942_1717	0.20	-0.4
1,787,978	+	glcF	Synpcc7942_1717	0.20	+0.4
1,788,083	+	glcF	Synpcc7942_1717	0.28	+0.9
1,788,100	+	glcF	Synpcc7942_1717	0.29	-1.8
1,788,111	-	glcF	Synpcc7942_1717	0.30	-0.9
1,788,166	-	glcF	Synpcc7942_1717	0.34	+0.0
1,788,179	+	glcF	Synpcc7942_1717	0.35	+0.2
1,788,226	-	glcF	Synpcc7942_1717	0.39	-0.5
1,788,279	+	glcF	Synpcc7942_1717	0.43	+0.4
1,788,294	+	glcF	Synpcc7942_1717	0.44	-1.5
1,788,316	+	glcF	Synpcc7942_1717	0.45	+0.0
1,788,351	+	glcF	Synpcc7942_1717	0.48	-0.7
1,788,359	+	glcF	Synpcc7942_1717	0.49	+0.2
1,788,369	+	glcF	Synpcc7942_1717	0.50	-0.7
1,788,374	+				-1.8
1,788,447	+	glcF	Synpcc7942_1717	0.56	-0.3
1,788,447	+	glcF	Synpcc7942_1717	0.56	-1.4
1,788,447	+	glcF	Synpcc7942_1717	0.56	+0.3
1,788,455	-	glcF	Synpcc7942_1717	0.56	+0.0
1,788,455	-	glcF	Synpcc7942_1717	0.56	-0.0
1,788,475	+	glcF	Synpcc7942_1717	0.58	-1.5
1,788,491	+	glcF	Synpcc7942_1717	0.59	-1.0
1,788,512	+	glcF	Synpcc7942_1717	0.61	-0.7
1,788,527	+	glcF	Synpcc7942_1717	0.62	+0.1
1,788,527	+	glcF	Synpcc7942_1717	0.62	+0.0
1,788,535	-	glcF	Synpcc7942_1717	0.62	-1.2
1,788,535	-	glcF	Synpcc7942_1717	0.62	+0.1
1,788,536	-	glcF	Synpcc7942_1717	0.62	-0.1
1,788,536	-	glcF	Synpcc7942_1717	0.62	-4.0
1,788,619	-	glcF	Synpcc7942_1717	0.69	+0.4
1,788,619	-	glcF	Synpcc7942_1717	0.69	-0.3
1,788,627	+	glcF	Synpcc7942_1717	0.69	-3.7