Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1604

Experiment: Flask growth in 60 uE Light-Dark 12:12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask growth in 60 uE Light-Dark 12:12
1,668,426	+	ampC	Synpcc7942_1603	0.26	+0.4
1,668,426	+	ampC	Synpcc7942_1603	0.26	-1.1
1,668,493	-	ampC	Synpcc7942_1603	0.32	+0.7
1,668,517	-	ampC	Synpcc7942_1603	0.34	-2.1
1,668,542	-	ampC	Synpcc7942_1603	0.36	+2.6
1,668,568	+	ampC	Synpcc7942_1603	0.38	-0.9
1,668,577	-	ampC	Synpcc7942_1603	0.39	+0.6
1,668,618	+	ampC	Synpcc7942_1603	0.43	-0.4
1,668,618	+	ampC	Synpcc7942_1603	0.43	+0.1
1,668,618	+	ampC	Synpcc7942_1603	0.43	-0.5
1,668,621	-	ampC	Synpcc7942_1603	0.43	+0.4
1,668,626	-	ampC	Synpcc7942_1603	0.43	-0.6
1,668,626	-	ampC	Synpcc7942_1603	0.43	+1.3
1,668,651	+	ampC	Synpcc7942_1603	0.46	-0.2
1,668,658	-	ampC	Synpcc7942_1603	0.46	+0.4
1,668,664	+	ampC	Synpcc7942_1603	0.47	+0.2
1,668,665	+	ampC	Synpcc7942_1603	0.47	+0.9
1,668,675	+	ampC	Synpcc7942_1603	0.48	+0.0
1,668,708	+	ampC	Synpcc7942_1603	0.51	+0.8
1,668,711	-	ampC	Synpcc7942_1603	0.51	+0.5
1,668,716	-	ampC	Synpcc7942_1603	0.51	-2.9
1,668,736	+	ampC	Synpcc7942_1603	0.53	-0.7
1,668,744	-	ampC	Synpcc7942_1603	0.54	+0.6
1,668,744	-	ampC	Synpcc7942_1603	0.54	-0.1
1,668,803	+	ampC	Synpcc7942_1603	0.59	+0.6
1,668,869	+	ampC	Synpcc7942_1603	0.65	+0.0
1,668,902	+	ampC	Synpcc7942_1603	0.68	+0.8
1,668,902	+	ampC	Synpcc7942_1603	0.68	-0.4
1,668,910	-	ampC	Synpcc7942_1603	0.69	+0.6
1,668,910	-	ampC	Synpcc7942_1603	0.69	-0.5
1,668,947	-	ampC	Synpcc7942_1603	0.72	+0.2
1,668,953	-	ampC	Synpcc7942_1603	0.72	-0.3
1,668,994	+	ampC	Synpcc7942_1603	0.76	+1.2
1,669,011	-	ampC	Synpcc7942_1603	0.78	-2.0
1,669,016	-	ampC	Synpcc7942_1603	0.78	-0.4
1,669,018	-	ampC	Synpcc7942_1603	0.78	-1.4
1,669,018	-	ampC	Synpcc7942_1603	0.78	-0.4
1,669,018	-	ampC	Synpcc7942_1603	0.78	-0.2
1,669,020	+				-0.4
1,669,025	+	ampC	Synpcc7942_1603	0.79	+0.5
1,669,025	+	ampC	Synpcc7942_1603	0.79	-0.6
1,669,025	+	ampC	Synpcc7942_1603	0.79	+0.2
1,669,025	+	ampC	Synpcc7942_1603	0.79	+2.2
1,669,025	+	ampC	Synpcc7942_1603	0.79	+0.6
1,669,025	+	ampC	Synpcc7942_1603	0.79	-0.2
1,669,025	+	ampC	Synpcc7942_1603	0.79	-1.4
1,669,033	-	ampC	Synpcc7942_1603	0.80	+0.5
1,669,091	+	ampC	Synpcc7942_1603	0.85	+1.1
1,669,127	+	ampC	Synpcc7942_1603	0.88	-2.4
1,669,154	-				+0.1
1,669,164	+				+0.4
1,669,182	+				+0.2
1,669,198	+				-0.5
1,669,222	+				-1.7
1,669,257	-				-0.6
1,669,275	+				+0.2
1,669,285	+				-3.6
1,669,330	+				-1.6
1,669,366	-				-2.4
1,669,390	-				-3.3
1,669,456	-	cdpA	Synpcc7942_1604	0.14	-4.0
1,669,481	+	cdpA	Synpcc7942_1604	0.15	-2.1
1,669,481	+	cdpA	Synpcc7942_1604	0.15	-4.1
1,669,486	+	cdpA	Synpcc7942_1604	0.16	-1.2
1,669,516	+	cdpA	Synpcc7942_1604	0.18	-1.1
1,669,524	-	cdpA	Synpcc7942_1604	0.19	-2.2
1,669,524	-	cdpA	Synpcc7942_1604	0.19	-2.1
1,669,524	-	cdpA	Synpcc7942_1604	0.19	-3.0
1,669,524	-	cdpA	Synpcc7942_1604	0.19	-0.7
1,669,524	-	cdpA	Synpcc7942_1604	0.19	-2.8
1,669,563	-	cdpA	Synpcc7942_1604	0.21	-1.1
1,669,643	-	cdpA	Synpcc7942_1604	0.27	-1.7
1,669,696	-	cdpA	Synpcc7942_1604	0.31	-0.7
1,669,811	+	cdpA	Synpcc7942_1604	0.40	-1.8
1,669,814	-	cdpA	Synpcc7942_1604	0.40	-3.1
1,669,819	-	cdpA	Synpcc7942_1604	0.40	-1.3
1,669,868	-	cdpA	Synpcc7942_1604	0.44	-4.4
1,669,913	+	cdpA	Synpcc7942_1604	0.47	-3.9
1,670,077	-	cdpA	Synpcc7942_1604	0.59	-2.0
1,670,144	+	cdpA	Synpcc7942_1604	0.64	-1.6
1,670,147	+	cdpA	Synpcc7942_1604	0.65	-2.6
1,670,156	-	cdpA	Synpcc7942_1604	0.65	-2.5
1,670,181	-	cdpA	Synpcc7942_1604	0.67	-2.1
1,670,200	-	cdpA	Synpcc7942_1604	0.69	-2.1
1,670,208	+	cdpA	Synpcc7942_1604	0.69	-1.7
1,670,217	+	cdpA	Synpcc7942_1604	0.70	-3.2
1,670,225	-	cdpA	Synpcc7942_1604	0.70	-2.9
1,670,373	+	cdpA	Synpcc7942_1604	0.81	-4.5
1,670,417	-	cdpA	Synpcc7942_1604	0.85	-3.8
1,670,488	-	cdpA	Synpcc7942_1604	0.90	-2.6
1,670,518	+				-2.4
1,670,526	-				+0.0
1,670,526	-				-3.1
1,670,593	+				+0.4
1,670,598	+				+0.3
1,670,627	-				-0.4
1,670,678	-				+0.6
1,670,724	-		Synpcc7942_1605	0.16	+0.7
1,670,755	+		Synpcc7942_1605	0.22	+0.6
1,670,775	+		Synpcc7942_1605	0.25	+0.0
1,670,775	-		Synpcc7942_1605	0.25	+0.1
1,670,853	-		Synpcc7942_1605	0.39	-1.0
1,670,853	-		Synpcc7942_1605	0.39	-1.9
1,670,867	+		Synpcc7942_1605	0.41	+3.3
1,670,869	+		Synpcc7942_1605	0.41	-0.2
1,670,874	+		Synpcc7942_1605	0.42	-1.3
1,670,875	-		Synpcc7942_1605	0.42	+1.0
1,670,890	-		Synpcc7942_1605	0.45	-1.1
1,670,896	+		Synpcc7942_1605	0.46	+0.5
1,670,896	+		Synpcc7942_1605	0.46	+0.4
1,670,896	+		Synpcc7942_1605	0.46	-0.0
1,670,899	-		Synpcc7942_1605	0.46	-0.4
1,670,904	-		Synpcc7942_1605	0.47	+0.6
1,670,904	-		Synpcc7942_1605	0.47	+0.7
1,670,916	-		Synpcc7942_1605	0.49	-0.2
1,670,941	-		Synpcc7942_1605	0.54	-0.7
1,670,941	-		Synpcc7942_1605	0.54	+0.4
1,670,951	-		Synpcc7942_1605	0.55	-0.2
1,670,951	-		Synpcc7942_1605	0.55	-0.5
1,670,982	+		Synpcc7942_1605	0.61	+0.2
1,671,012	+		Synpcc7942_1605	0.66	+1.0
1,671,020	-		Synpcc7942_1605	0.67	+0.3
1,671,089	-		Synpcc7942_1605	0.79	-0.5
1,671,127	+		Synpcc7942_1605	0.86	+0.2
1,671,192	-				+0.8
1,671,414	+				-1.3
1,671,420	-				+0.4
1,671,433	-				+0.8