Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1557

Experiment: Flask growth in 60 uE Light-Dark 12:12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask growth in 60 uE Light-Dark 12:12
1,612,475	+		Synpcc7942_1555	0.67	-0.3
1,612,483	-		Synpcc7942_1555	0.68	+1.2
1,612,600	+		Synpcc7942_1555	0.82	+0.1
1,612,628	+		Synpcc7942_1555	0.86	+0.4
1,612,633	+		Synpcc7942_1555	0.86	-1.1
1,612,641	-		Synpcc7942_1555	0.87	-0.9
1,612,717	-				+0.5
1,612,748	-				-1.1
1,612,753	-				-0.0
1,612,757	-				-0.6
1,612,788	+				+2.0
1,612,788	+				-0.3
1,612,788	+				+0.1
1,612,796	-				-0.6
1,612,811	-				-0.9
1,612,840	-				-2.4
1,612,899	-				-0.9
1,612,912	-				+0.5
1,612,916	+				-0.3
1,612,916	+				-1.6
1,612,917	-				-0.2
1,612,921	+				+1.6
1,612,923	-				-0.6
1,612,924	-				-1.7
1,612,926	+				-0.1
1,612,932	+		Synpcc7942_1556	0.11	-0.6
1,612,934	-		Synpcc7942_1556	0.11	+0.5
1,612,934	-		Synpcc7942_1556	0.11	+0.4
1,612,935	-		Synpcc7942_1556	0.11	-1.1
1,612,940	-		Synpcc7942_1556	0.12	-1.0
1,612,950	-		Synpcc7942_1556	0.14	+0.4
1,612,957	-		Synpcc7942_1556	0.15	+0.2
1,613,004	+		Synpcc7942_1556	0.23	+0.8
1,613,057	+		Synpcc7942_1556	0.32	-1.6
1,613,067	+		Synpcc7942_1556	0.34	+0.4
1,613,070	-		Synpcc7942_1556	0.35	-1.8
1,613,075	-		Synpcc7942_1556	0.35	-0.6
1,613,079	+		Synpcc7942_1556	0.36	+0.2
1,613,124	+		Synpcc7942_1556	0.44	+0.3
1,613,127	+		Synpcc7942_1556	0.44	+0.1
1,613,132	+		Synpcc7942_1556	0.45	-1.0
1,613,193	-		Synpcc7942_1556	0.56	-0.0
1,613,193	-		Synpcc7942_1556	0.56	-0.2
1,613,215	+		Synpcc7942_1556	0.60	+0.7
1,613,253	+				+0.2
1,613,265	+		Synpcc7942_1556	0.68	-1.0
1,613,275	-		Synpcc7942_1556	0.70	-0.7
1,613,376	+		Synpcc7942_1556	0.87	-1.2
1,613,384	-		Synpcc7942_1556	0.89	-0.2
1,613,385	-		Synpcc7942_1556	0.89	-0.9
1,613,399	+				+0.1
1,613,428	+				-0.2
1,613,455	-				-1.7
1,613,455	-				-0.9
1,613,518	+				-1.3
1,613,548	+				-0.3
1,613,577	+	rpoD6	Synpcc7942_1557	0.12	+0.3
1,613,578	+	rpoD6	Synpcc7942_1557	0.12	-1.7
1,613,586	-	rpoD6	Synpcc7942_1557	0.13	-1.8
1,613,586	-	rpoD6	Synpcc7942_1557	0.13	-1.0
1,613,586	-	rpoD6	Synpcc7942_1557	0.13	-0.7
1,613,604	-	rpoD6	Synpcc7942_1557	0.15	-2.0
1,613,637	-	rpoD6	Synpcc7942_1557	0.19	-0.6
1,613,657	+	rpoD6	Synpcc7942_1557	0.21	-0.6
1,613,657	+	rpoD6	Synpcc7942_1557	0.21	-1.0
1,613,754	+	rpoD6	Synpcc7942_1557	0.31	-1.5
1,613,762	-	rpoD6	Synpcc7942_1557	0.32	-0.6
1,613,780	-	rpoD6	Synpcc7942_1557	0.34	-2.5
1,613,818	+	rpoD6	Synpcc7942_1557	0.38	-3.3
1,613,830	+	rpoD6	Synpcc7942_1557	0.39	-1.0
1,613,943	+	rpoD6	Synpcc7942_1557	0.51	-2.2
1,613,951	-	rpoD6	Synpcc7942_1557	0.52	-2.2
1,613,961	-	rpoD6	Synpcc7942_1557	0.53	-2.6
1,613,981	-	rpoD6	Synpcc7942_1557	0.55	-3.3
1,613,996	-	rpoD6	Synpcc7942_1557	0.57	-2.7
1,614,026	+	rpoD6	Synpcc7942_1557	0.60	-1.7
1,614,104	-	rpoD6	Synpcc7942_1557	0.69	-3.2
1,614,112	-	rpoD6	Synpcc7942_1557	0.69	-0.5
1,614,165	-	rpoD6	Synpcc7942_1557	0.75	-2.1
1,614,283	-	rpoD6	Synpcc7942_1557	0.88	-0.6
1,614,315	+				-4.4
1,614,552	-				-1.1
1,614,607	+				-0.4
1,614,607	+				-0.4
1,614,699	+				-1.3
1,614,925	-				-0.8
1,614,928	+				-1.6
1,614,928	+				-0.8
1,614,936	+				+0.9
1,614,936	-				-0.3
1,614,936	-				-0.3
1,614,976	-				-0.4
1,614,997	+				+0.8
1,615,081	+				+0.0
1,615,085	-				+1.7
1,615,085	-				+0.3
1,615,180	+				-0.7
1,615,188	-				+0.0
1,615,188	-				-0.6
1,615,214	-				+0.2
1,615,216	-				-0.0