Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1527

Experiment: Flask growth in 60 uE Light-Dark 12:12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask growth in 60 uE Light-Dark 12:12
1,585,332	-				-0.1
1,585,368	+		Synpcc7942_1526	0.10	+1.9
1,585,387	-		Synpcc7942_1526	0.13	-1.7
1,585,392	+		Synpcc7942_1526	0.13	+1.6
1,585,404	+		Synpcc7942_1526	0.15	-1.5
1,585,427	+		Synpcc7942_1526	0.18	+0.3
1,585,515	+		Synpcc7942_1526	0.29	+0.3
1,585,536	+		Synpcc7942_1526	0.31	-0.6
1,585,536	+		Synpcc7942_1526	0.31	-0.2
1,585,537	-		Synpcc7942_1526	0.32	-0.1
1,585,557	-		Synpcc7942_1526	0.34	-0.2
1,585,564	+		Synpcc7942_1526	0.35	-0.1
1,585,564	+		Synpcc7942_1526	0.35	+0.6
1,585,564	+		Synpcc7942_1526	0.35	-1.0
1,585,572	-		Synpcc7942_1526	0.36	+0.1
1,585,586	+		Synpcc7942_1526	0.38	-0.4
1,585,589	+		Synpcc7942_1526	0.38	+0.4
1,585,596	-		Synpcc7942_1526	0.39	+0.0
1,585,598	+		Synpcc7942_1526	0.39	-0.7
1,585,607	+		Synpcc7942_1526	0.40	-1.3
1,585,671	-		Synpcc7942_1526	0.48	+1.2
1,585,671	-		Synpcc7942_1526	0.48	-2.1
1,585,682	+				+1.4
1,585,686	+		Synpcc7942_1526	0.50	+0.9
1,585,690	-		Synpcc7942_1526	0.51	-0.4
1,585,691	+		Synpcc7942_1526	0.51	-1.7
1,585,697	+		Synpcc7942_1526	0.52	-0.1
1,585,699	-		Synpcc7942_1526	0.52	-1.0
1,585,719	+		Synpcc7942_1526	0.55	-3.0
1,585,757	-		Synpcc7942_1526	0.59	-2.0
1,585,810	+		Synpcc7942_1526	0.66	-0.8
1,585,818	-		Synpcc7942_1526	0.67	+0.1
1,585,835	-		Synpcc7942_1526	0.69	-0.1
1,585,862	-		Synpcc7942_1526	0.73	-0.2
1,585,889	-		Synpcc7942_1526	0.76	-1.8
1,585,949	+		Synpcc7942_1526	0.84	-1.9
1,585,975	-		Synpcc7942_1526	0.87	-0.9
1,585,977	+		Synpcc7942_1526	0.87	+0.4
1,586,004	+				-1.9
1,586,004	+				-0.9
1,586,005	+				-1.7
1,586,013	-				+0.7
1,586,045	-				+0.0
1,586,072	+				-0.5
1,586,072	+				-1.7
1,586,080	-				-0.1
1,586,080	-				-0.8
1,586,080	-				-0.6
1,586,080	-				-1.6
1,586,080	-				-1.4
1,586,080	-				-0.1
1,586,080	-				+0.6
1,586,080	-				-0.5
1,586,080	-				-1.2
1,586,080	-				+0.4
1,586,096	+				-1.0
1,586,096	+				-1.8
1,586,096	+				-1.0
1,586,096	+				-0.2
1,586,096	+				-0.2
1,586,096	+				+0.7
1,586,104	-				-0.3
1,586,104	-				+0.7
1,586,104	-				-0.8
1,586,111	-				+0.3
1,586,118	-				-2.2
1,586,122	+				+0.5
1,586,128	-				-0.1
1,586,153	+				-0.5
1,586,166	+				-1.5
1,586,193	-				+0.7
1,586,227	+				+1.3
1,586,276	-				+3.6
1,586,323	+				+4.0
1,586,325	+				+3.4
1,586,334	+				+3.2
1,586,358	+				+3.9
1,586,366	-				+4.1
1,586,370	-				+3.8
1,586,421	-				+3.6
1,586,434	+				+3.6
1,586,434	+				+4.2
1,586,434	+				+3.9
1,586,434	+				+3.9
1,586,442	-				+3.7
1,586,442	-				+3.6
1,586,442	-				+3.7
1,586,442	-				+3.8
1,586,449	+				+3.3
1,586,451	+				+3.4
1,586,514	+		Synpcc7942_1527	0.11	+5.1
1,586,535	+		Synpcc7942_1527	0.12	+3.4
1,586,540	-		Synpcc7942_1527	0.12	+3.8
1,586,583	+		Synpcc7942_1527	0.14	+3.4
1,586,593	+		Synpcc7942_1527	0.14	+3.6
1,586,596	-		Synpcc7942_1527	0.14	+3.8
1,586,597	-		Synpcc7942_1527	0.14	+1.9
1,586,631	-		Synpcc7942_1527	0.15	+3.9
1,586,641	-		Synpcc7942_1527	0.16	+3.4
1,586,657	-		Synpcc7942_1527	0.16	+3.8
1,586,657	-		Synpcc7942_1527	0.16	+4.1
1,586,659	-		Synpcc7942_1527	0.17	+3.5
1,586,661	+		Synpcc7942_1527	0.17	+3.5
1,586,661	+		Synpcc7942_1527	0.17	+3.9
1,586,692	+		Synpcc7942_1527	0.18	+4.0
1,586,692	+		Synpcc7942_1527	0.18	+4.3
1,586,700	-		Synpcc7942_1527	0.18	+3.6
1,586,700	-		Synpcc7942_1527	0.18	+4.0
1,586,705	-		Synpcc7942_1527	0.18	+4.9
1,586,726	+		Synpcc7942_1527	0.19	+3.4
1,586,729	-		Synpcc7942_1527	0.19	+3.4
1,586,730	+		Synpcc7942_1527	0.19	+3.5
1,586,747	-		Synpcc7942_1527	0.20	+3.5
1,586,751	+		Synpcc7942_1527	0.20	+3.8
1,586,752	-		Synpcc7942_1527	0.20	+3.7
1,586,782	-		Synpcc7942_1527	0.21	+3.2
1,586,782	-		Synpcc7942_1527	0.21	+4.1
1,586,792	+		Synpcc7942_1527	0.22	+3.6
1,586,822	+				+3.6
1,586,827	+		Synpcc7942_1527	0.23	+3.7
1,586,869	+		Synpcc7942_1527	0.25	+3.8
1,586,887	+		Synpcc7942_1527	0.26	+3.6
1,586,914	+		Synpcc7942_1527	0.27	+3.8
1,586,914	+		Synpcc7942_1527	0.27	+4.2
1,586,922	+		Synpcc7942_1527	0.27	+3.6
1,586,922	-		Synpcc7942_1527	0.27	+3.9
1,586,922	-		Synpcc7942_1527	0.27	+3.2
1,586,922	-		Synpcc7942_1527	0.27	+3.7
1,586,948	-		Synpcc7942_1527	0.28	+3.7
1,586,950	+		Synpcc7942_1527	0.28	+3.8
1,586,952	+		Synpcc7942_1527	0.28	+3.0
1,586,960	-				+3.2
1,586,960	-		Synpcc7942_1527	0.28	+3.1
1,586,982	+		Synpcc7942_1527	0.29	+3.8
1,586,982	+		Synpcc7942_1527	0.29	+3.8
1,586,983	-		Synpcc7942_1527	0.29	+2.7
1,586,983	-		Synpcc7942_1527	0.29	+3.2
1,586,990	-		Synpcc7942_1527	0.30	+3.9
1,586,992	+		Synpcc7942_1527	0.30	+3.6
1,587,002	+		Synpcc7942_1527	0.30	+2.8
1,587,010	-		Synpcc7942_1527	0.30	+3.5
1,587,037	+		Synpcc7942_1527	0.32	+3.2
1,587,046	-		Synpcc7942_1527	0.32	+3.3
1,587,056	+		Synpcc7942_1527	0.32	+3.7
1,587,064	-		Synpcc7942_1527	0.33	+3.4
1,587,079	+		Synpcc7942_1527	0.33	+3.9
1,587,101	+		Synpcc7942_1527	0.34	+3.4
1,587,109	-		Synpcc7942_1527	0.34	+3.6
1,587,139	+		Synpcc7942_1527	0.36	+4.2
1,587,146	-		Synpcc7942_1527	0.36	+3.3
1,587,158	+		Synpcc7942_1527	0.36	+4.0
1,587,166	-		Synpcc7942_1527	0.37	+4.0
1,587,217	-		Synpcc7942_1527	0.39	+3.0
1,587,223	-		Synpcc7942_1527	0.39	+3.2
1,587,235	-		Synpcc7942_1527	0.39	+3.9
1,587,262	+		Synpcc7942_1527	0.40	+3.7
1,587,301	-		Synpcc7942_1527	0.42	+3.7
1,587,338	+		Synpcc7942_1527	0.44	+4.2
1,587,340	+		Synpcc7942_1527	0.44	+4.6
1,587,356	-		Synpcc7942_1527	0.44	+4.1
1,587,384	+		Synpcc7942_1527	0.45	+3.4
1,587,392	-				+2.6
1,587,451	+		Synpcc7942_1527	0.48	+3.6
1,587,451	+				+3.7
1,587,451	+		Synpcc7942_1527	0.48	+4.1
1,587,451	+		Synpcc7942_1527	0.48	+3.7
1,587,459	-		Synpcc7942_1527	0.48	+3.9
1,587,462	+		Synpcc7942_1527	0.48	+3.7
1,587,479	+		Synpcc7942_1527	0.49	+3.9
1,587,498	+				+4.3
1,587,535	+		Synpcc7942_1527	0.51	+3.2
1,587,535	+		Synpcc7942_1527	0.51	+4.4
1,587,535	+		Synpcc7942_1527	0.51	+3.6
1,587,535	+		Synpcc7942_1527	0.51	+3.7
1,587,535	+		Synpcc7942_1527	0.51	+3.1
1,587,535	+		Synpcc7942_1527	0.51	+4.1
1,587,535	+		Synpcc7942_1527	0.51	+3.8
1,587,543	-		Synpcc7942_1527	0.52	+3.6
1,587,543	-		Synpcc7942_1527	0.52	+4.0
1,587,543	-		Synpcc7942_1527	0.52	+4.1
1,587,543	-		Synpcc7942_1527	0.52	+4.0
1,587,543	-		Synpcc7942_1527	0.52	+4.0
1,587,543	-		Synpcc7942_1527	0.52	+3.6
1,587,543	-		Synpcc7942_1527	0.52	+3.9
1,587,543	-		Synpcc7942_1527	0.52	+4.5
1,587,546	+		Synpcc7942_1527	0.52	+4.6
1,587,559	+		Synpcc7942_1527	0.52	+3.8
1,587,559	+		Synpcc7942_1527	0.52	+3.9
1,587,559	+		Synpcc7942_1527	0.52	+4.2
1,587,559	+		Synpcc7942_1527	0.52	+4.1
1,587,559	+		Synpcc7942_1527	0.52	+4.9
1,587,567	-		Synpcc7942_1527	0.53	+3.0
1,587,569	+		Synpcc7942_1527	0.53	+2.6
1,587,569	+		Synpcc7942_1527	0.53	+4.0
1,587,577	-		Synpcc7942_1527	0.53	+3.6
1,587,577	-				+3.6
1,587,593	+		Synpcc7942_1527	0.54	+4.6
1,587,599	+		Synpcc7942_1527	0.54	+4.0
1,587,604	+		Synpcc7942_1527	0.54	+3.4
1,587,604	+		Synpcc7942_1527	0.54	+3.4
1,587,614	+		Synpcc7942_1527	0.54	+3.7
1,587,614	+		Synpcc7942_1527	0.54	+3.7
1,587,622	-		Synpcc7942_1527	0.55	+3.5
1,587,623	+		Synpcc7942_1527	0.55	+3.5
1,587,666	-		Synpcc7942_1527	0.57	+3.7
1,587,670	+		Synpcc7942_1527	0.57	+3.9
1,587,678	-		Synpcc7942_1527	0.57	+3.6
1,587,714	+				+2.0
1,587,716	-		Synpcc7942_1527	0.59	+4.1
1,587,722	-		Synpcc7942_1527	0.59	+3.4
1,587,729	-		Synpcc7942_1527	0.59	+3.5
1,587,737	+		Synpcc7942_1527	0.59	+3.5
1,587,755	-		Synpcc7942_1527	0.60	+3.5
1,587,756	+		Synpcc7942_1527	0.60	+3.8
1,587,816	+		Synpcc7942_1527	0.62	+4.4
1,587,851	-		Synpcc7942_1527	0.64	+3.3
1,587,861	+		Synpcc7942_1527	0.64	+4.0
1,587,874	+		Synpcc7942_1527	0.65	+3.9
1,587,880	+		Synpcc7942_1527	0.65	+3.6
1,587,950	+		Synpcc7942_1527	0.68	+3.7
1,588,047	-		Synpcc7942_1527	0.72	+3.0
1,588,061	-		Synpcc7942_1527	0.72	+4.3
1,588,067	+		Synpcc7942_1527	0.72	+3.4
1,588,067	+		Synpcc7942_1527	0.72	+3.6
1,588,069	-		Synpcc7942_1527	0.73	+4.6
1,588,075	+		Synpcc7942_1527	0.73	+4.0
1,588,075	-		Synpcc7942_1527	0.73	+3.7
1,588,075	-		Synpcc7942_1527	0.73	+4.6
1,588,075	-		Synpcc7942_1527	0.73	+3.6
1,588,075	-		Synpcc7942_1527	0.73	+4.0
1,588,083	-		Synpcc7942_1527	0.73	+4.2
1,588,091	+		Synpcc7942_1527	0.73	+2.6
1,588,091	+		Synpcc7942_1527	0.73	+4.0
1,588,095	+		Synpcc7942_1527	0.74	+2.6
1,588,099	-		Synpcc7942_1527	0.74	+3.5
1,588,099	-		Synpcc7942_1527	0.74	+3.6
1,588,119	-		Synpcc7942_1527	0.75	+4.0
1,588,128	+		Synpcc7942_1527	0.75	+3.7
1,588,136	-		Synpcc7942_1527	0.75	+4.0
1,588,151	+		Synpcc7942_1527	0.76	+3.6
1,588,157	-		Synpcc7942_1527	0.76	+4.3
1,588,164	-		Synpcc7942_1527	0.76	+3.9
1,588,169	-		Synpcc7942_1527	0.77	+4.6
1,588,175	+		Synpcc7942_1527	0.77	+3.2
1,588,178	+		Synpcc7942_1527	0.77	+3.1
1,588,244	+		Synpcc7942_1527	0.79	+4.1
1,588,247	-		Synpcc7942_1527	0.80	+3.8
1,588,274	-		Synpcc7942_1527	0.81	+4.5
1,588,288	+		Synpcc7942_1527	0.81	+3.6
1,588,288	+		Synpcc7942_1527	0.81	+4.5
1,588,291	-		Synpcc7942_1527	0.81	+3.9
1,588,303	+		Synpcc7942_1527	0.82	+3.0
1,588,304	-				+2.4
1,588,311	-		Synpcc7942_1527	0.82	+4.0
1,588,343	-		Synpcc7942_1527	0.83	+3.8
1,588,367	+		Synpcc7942_1527	0.84	+3.7
1,588,367	+		Synpcc7942_1527	0.84	+3.6
1,588,367	+		Synpcc7942_1527	0.84	+3.9
1,588,370	-				+3.0
1,588,375	-		Synpcc7942_1527	0.85	+2.4
1,588,375	-		Synpcc7942_1527	0.85	+3.7
1,588,408	+		Synpcc7942_1527	0.86	+3.7
1,588,421	+		Synpcc7942_1527	0.87	+3.6
1,588,427	-		Synpcc7942_1527	0.87	+3.5
1,588,429	-		Synpcc7942_1527	0.87	+4.3
1,588,453	+		Synpcc7942_1527	0.88	+4.3
1,588,461	-		Synpcc7942_1527	0.88	+3.7
1,588,461	-		Synpcc7942_1527	0.88	+3.6
1,588,461	-		Synpcc7942_1527	0.88	+3.5
1,588,461	-		Synpcc7942_1527	0.88	+3.8
1,588,482	-		Synpcc7942_1527	0.89	+4.1
1,588,501	-		Synpcc7942_1527	0.90	+3.8
1,588,511	+				+3.6
1,588,515	+				+3.1
1,588,518	-				+0.4
1,588,532	+				+2.7
1,588,532	+				+3.3
1,588,540	-				+3.8
1,588,547	+				+3.6
1,588,547	+				+3.9
1,588,547	+				+3.7
1,588,547	+				+2.3
1,588,547	+				+2.8
1,588,554	+				+3.1
1,588,555	-				+2.7
1,588,555	-				+2.0
1,588,555	-				+2.9
1,588,585	+				+3.4
1,588,585	+				+4.0
1,588,585	+				+3.6
1,588,588	-				+3.8
1,588,590	+				+3.7
1,588,590	+				+3.1
1,588,598	-				+3.5
1,588,598	-				+2.7
1,588,684	+				+3.6
1,588,702	+				+3.5
1,588,707	+				+3.9
1,588,708	+				+3.6
1,588,728	+				+3.9
1,588,754	+				-0.2
1,588,782	+				+2.2
1,588,790	-				-0.6
1,588,790	-				+0.5
1,588,797	-				-2.3
1,588,814	+				-0.2
1,588,822	-				+0.2
1,588,834	-				-0.8
1,588,851	-	ycf49	Synpcc7942_1528	0.10	-1.7
1,588,885	-	ycf49	Synpcc7942_1528	0.21	-1.7
1,588,915	+	ycf49	Synpcc7942_1528	0.30	-0.8
1,588,915	+	ycf49	Synpcc7942_1528	0.30	-2.1
1,588,915	+	ycf49	Synpcc7942_1528	0.30	+0.2
1,588,915	+	ycf49	Synpcc7942_1528	0.30	+0.2
1,588,918	-	ycf49	Synpcc7942_1528	0.31	+0.5
1,588,923	-	ycf49	Synpcc7942_1528	0.32	+0.5
1,588,923	-	ycf49	Synpcc7942_1528	0.32	+1.4
1,588,923	-	ycf49	Synpcc7942_1528	0.32	-0.3
1,588,943	-	ycf49	Synpcc7942_1528	0.38	-1.7
1,588,945	+	ycf49	Synpcc7942_1528	0.39	+0.1
1,588,980	-	ycf49	Synpcc7942_1528	0.49	+0.5
1,588,981	-	ycf49	Synpcc7942_1528	0.50	+1.9
1,588,983	+	ycf49	Synpcc7942_1528	0.50	+0.5
1,588,994	-	ycf49	Synpcc7942_1528	0.54	+1.2
1,589,000	+	ycf49	Synpcc7942_1528	0.55	+0.3
1,589,003	-	ycf49	Synpcc7942_1528	0.56	+0.5
1,589,008	-	ycf49	Synpcc7942_1528	0.58	+0.5
1,589,008	-	ycf49	Synpcc7942_1528	0.58	+0.1
1,589,029	+	ycf49	Synpcc7942_1528	0.64	+1.1
1,589,029	+	ycf49	Synpcc7942_1528	0.64	-1.3
1,589,029	+	ycf49	Synpcc7942_1528	0.64	+0.5
1,589,029	+	ycf49	Synpcc7942_1528	0.64	+0.9
1,589,032	-	ycf49	Synpcc7942_1528	0.65	+0.2
1,589,037	-	ycf49	Synpcc7942_1528	0.67	-0.0
1,589,037	-	ycf49	Synpcc7942_1528	0.67	-0.2
1,589,053	+	ycf49	Synpcc7942_1528	0.72	-1.8
1,589,078	-	ycf49	Synpcc7942_1528	0.79	-0.0
1,589,131	+				-1.1
1,589,131	+				-1.7
1,589,150	-				-0.3
1,589,162	-				-1.3
1,589,164	-				+0.3
1,589,166	+				-1.9
1,589,166	+				+0.5
1,589,171	+				-0.5
1,589,172	-				+0.3
1,589,174	-				+0.1
1,589,174	-				+0.3
1,589,180	-				-1.0