Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1124

Experiment: Flask growth in 60 uE Light-Dark 12:12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask growth in 60 uE Light-Dark 12:12
1,140,290	-		Synpcc7942_1121	0.85	+1.0
1,140,290	-		Synpcc7942_1121	0.85	-2.7
1,140,290	-		Synpcc7942_1121	0.85	-1.1
1,140,303	+		Synpcc7942_1121	0.85	-0.0
1,140,324	+		Synpcc7942_1121	0.86	-1.1
1,140,362	+		Synpcc7942_1121	0.88	-1.1
1,140,367	-		Synpcc7942_1121	0.88	-1.1
1,140,374	+		Synpcc7942_1121	0.88	-1.3
1,140,406	-		Synpcc7942_1121	0.90	-0.5
1,140,434	-				+0.2
1,140,485	-				-0.6
1,140,498	+				-0.6
1,140,544	-				+0.2
1,140,559	+				+0.3
1,140,562	-				-1.3
1,140,566	+				-2.3
1,140,567	-				-0.5
1,140,574	-				-0.6
1,140,575	-				+1.6
1,140,610	+				-0.7
1,140,611	+				+0.2
1,140,619	-				-2.1
1,140,619	-				-1.2
1,140,619	-				-2.5
1,140,644	+				+0.3
1,140,644	+				-0.4
1,140,646	+				-0.1
1,140,648	+				-0.3
1,140,651	+				+0.3
1,140,653	+				+1.8
1,140,658	-				+0.7
1,140,661	-				+0.5
1,140,668	-				-0.0
1,140,700	-				-0.2
1,140,700	-				-0.5
1,140,725	-				+0.5
1,140,733	-				-0.7
1,141,247	-				-0.8
1,141,275	-				-2.0
1,141,278	+				-1.2
1,141,286	-				+0.4
1,141,286	-				-0.8
1,141,286	-				-2.3
1,141,342	+				-0.9
1,141,449	+				-0.4
1,141,456	+				-2.5
1,141,456	+				-2.4
1,141,456	+				-1.1
1,141,456	+				-0.6
1,141,464	-				-0.4
1,141,464	-				-1.4
1,141,489	-				-1.2
1,141,495	+	rnb	Synpcc7942_1124	0.10	-1.7
1,141,505	-	rnb	Synpcc7942_1124	0.11	-1.7
1,141,561	+	rnb	Synpcc7942_1124	0.14	-2.6
1,141,569	+	rnb	Synpcc7942_1124	0.14	-0.0
1,141,574	+	rnb	Synpcc7942_1124	0.14	-1.0
1,141,630	-	rnb	Synpcc7942_1124	0.17	-0.9
1,141,685	+	rnb	Synpcc7942_1124	0.20	-0.8
1,141,685	+	rnb	Synpcc7942_1124	0.20	-1.6
1,141,685	+	rnb	Synpcc7942_1124	0.20	-1.7
1,141,685	+	rnb	Synpcc7942_1124	0.20	-1.9
1,141,693	-	rnb	Synpcc7942_1124	0.20	-2.0
1,141,777	+	rnb	Synpcc7942_1124	0.24	-2.5
1,141,785	-	rnb	Synpcc7942_1124	0.25	-1.9
1,141,832	+	rnb	Synpcc7942_1124	0.27	-3.2
1,141,832	-	rnb	Synpcc7942_1124	0.27	-0.9
1,141,840	-	rnb	Synpcc7942_1124	0.27	+0.2
1,141,855	+	rnb	Synpcc7942_1124	0.28	-0.4
1,141,857	-	rnb	Synpcc7942_1124	0.28	-0.8
1,141,874	+	rnb	Synpcc7942_1124	0.29	-0.6
1,141,930	+	rnb	Synpcc7942_1124	0.32	-2.0
1,141,931	+				+0.4
1,141,938	-	rnb	Synpcc7942_1124	0.32	-1.6
1,141,938	-	rnb	Synpcc7942_1124	0.32	-0.9
1,141,953	+	rnb	Synpcc7942_1124	0.33	-1.2
1,141,958	+	rnb	Synpcc7942_1124	0.33	-0.9
1,141,966	+	rnb	Synpcc7942_1124	0.34	-0.9
1,142,007	-	rnb	Synpcc7942_1124	0.36	+0.7
1,143,263	+				+0.3
1,143,263	+				+0.5
1,143,282	+				+1.9
1,143,288	-				+0.2
1,143,288	-				+1.6
1,143,288	-				-1.0
1,143,288	-				+1.4
1,143,289	-				+1.7
1,143,294	+				+0.4
1,143,303	-				-0.2
1,143,333	-				+1.3
1,143,335	+				+0.2
1,143,335	+				-1.3
1,143,349	-				-1.0
1,143,359	+				+0.0
1,143,366	+				+1.0
1,143,369	-				+0.7
1,143,369	-				+0.3
1,143,379	-				+1.0
1,143,385	+				+0.2
1,143,386	+				+1.0
1,143,463	+				+0.7
1,143,463	+				+0.3
1,143,471	-				-0.2
1,143,472	+				-0.6
1,143,480	-				+0.8
1,143,542	+		Synpcc7942_1125	0.15	+0.8
1,143,542	+		Synpcc7942_1125	0.15	-0.8
1,143,544	+		Synpcc7942_1125	0.16	+0.5
1,143,544	+		Synpcc7942_1125	0.16	+0.5
1,143,544	+		Synpcc7942_1125	0.16	-0.9
1,143,544	+		Synpcc7942_1125	0.16	+0.4
1,143,550	-		Synpcc7942_1125	0.16	-1.3
1,143,550	-		Synpcc7942_1125	0.16	-1.3
1,143,550	-		Synpcc7942_1125	0.16	-0.7
1,143,552	-		Synpcc7942_1125	0.17	-0.7
1,143,552	-		Synpcc7942_1125	0.17	+0.2
1,143,552	-		Synpcc7942_1125	0.17	-1.3
1,143,560	-		Synpcc7942_1125	0.17	+0.2
1,143,564	-		Synpcc7942_1125	0.18	+0.5
1,143,568	+		Synpcc7942_1125	0.18	-1.2
1,143,611	+		Synpcc7942_1125	0.23	-0.0
1,143,611	+		Synpcc7942_1125	0.23	-0.2
1,143,611	+		Synpcc7942_1125	0.23	-0.7
1,143,611	+		Synpcc7942_1125	0.23	+0.3
1,143,611	+		Synpcc7942_1125	0.23	-0.5
1,143,619	-				+1.0
1,143,626	-		Synpcc7942_1125	0.24	-0.0
1,143,641	-		Synpcc7942_1125	0.26	+0.2
1,143,642	+		Synpcc7942_1125	0.26	+0.7
1,143,658	+		Synpcc7942_1125	0.28	-0.7
1,143,724	-		Synpcc7942_1125	0.35	-0.5
1,143,726	+		Synpcc7942_1125	0.35	+0.7
1,143,727	-		Synpcc7942_1125	0.35	+1.0
1,143,766	+		Synpcc7942_1125	0.39	+0.4
1,143,792	-		Synpcc7942_1125	0.42	+1.2
1,143,808	+		Synpcc7942_1125	0.44	-0.7
1,143,808	+		Synpcc7942_1125	0.44	-0.3
1,143,829	-		Synpcc7942_1125	0.46	+0.3
1,143,829	-		Synpcc7942_1125	0.46	+0.7
1,143,859	-		Synpcc7942_1125	0.49	+1.5
1,143,936	+		Synpcc7942_1125	0.58	+0.8
1,143,956	-		Synpcc7942_1125	0.60	+0.8
1,143,986	+		Synpcc7942_1125	0.63	+1.1
1,143,994	+		Synpcc7942_1125	0.64	+0.3
1,144,004	-		Synpcc7942_1125	0.65	-0.5
1,144,015	-		Synpcc7942_1125	0.66	-1.0
1,144,016	+		Synpcc7942_1125	0.66	+0.0
1,144,043	+		Synpcc7942_1125	0.69	-0.1
1,144,051	-		Synpcc7942_1125	0.70	+0.7
1,144,106	+		Synpcc7942_1125	0.76	+0.1
1,144,114	-		Synpcc7942_1125	0.77	+0.7
1,144,119	-		Synpcc7942_1125	0.77	+0.1
1,144,171	-		Synpcc7942_1125	0.83	+2.3
1,144,176	-		Synpcc7942_1125	0.83	-0.4
1,144,176	-		Synpcc7942_1125	0.83	-0.0
1,144,185	-		Synpcc7942_1125	0.84	+0.4
1,144,198	+		Synpcc7942_1125	0.86	-1.0
1,144,254	+				-0.5
1,144,254	+				-1.3
1,144,257	-				+0.5
1,144,284	+				+0.9
1,144,286	+				+0.6
1,144,286	+				-0.1
1,144,290	-				-0.4