Experiment: Flask growth in 60 uE Light-Dark 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cysC and Synpcc7942_0940 are separated by 44 nucleotides Synpcc7942_0940 and Synpcc7942_0941 are separated by 424 nucleotides Synpcc7942_0941 and ftsH are separated by 183 nucleotides
Synpcc7942_0939: cysC - adenylylsulfate kinase, at 944,618 to 945,244
cysC
Synpcc7942_0940: Synpcc7942_0940 - transcriptional regulator, XRE family, at 945,289 to 945,639
_0940
Synpcc7942_0941: Synpcc7942_0941 - ATPase, at 946,064 to 947,773
_0941
Synpcc7942_0942: ftsH - FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41, at 947,957 to 949,849
ftsH
Position (kb) 946
947
948 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 945.191 kb on + strand at 945.199 kb on + strand at 945.199 kb on + strand at 945.201 kb on + strand at 945.270 kb on - strand at 945.285 kb on - strand at 945.285 kb on - strand at 945.290 kb on - strand at 945.323 kb on + strand at 945.323 kb on + strand at 945.340 kb on + strand, within Synpcc7942_0940 at 945.343 kb on + strand, within Synpcc7942_0940 at 945.358 kb on + strand, within Synpcc7942_0940 at 945.365 kb on + strand, within Synpcc7942_0940 at 945.377 kb on + strand, within Synpcc7942_0940 at 945.385 kb on - strand, within Synpcc7942_0940 at 945.390 kb on - strand, within Synpcc7942_0940 at 945.512 kb on + strand, within Synpcc7942_0940 at 945.684 kb on + strand at 945.707 kb on - strand at 945.758 kb on - strand at 945.758 kb on - strand at 945.760 kb on + strand at 945.760 kb on + strand at 945.768 kb on - strand at 945.794 kb on + strand at 945.812 kb on - strand at 945.812 kb on - strand at 945.835 kb on - strand at 945.874 kb on + strand at 945.887 kb on + strand at 945.904 kb on - strand at 945.920 kb on + strand at 946.006 kb on + strand at 946.062 kb on + strand at 946.070 kb on - strand at 946.070 kb on - strand at 946.070 kb on - strand at 946.070 kb on - strand at 946.070 kb on - strand at 946.070 kb on - strand at 946.143 kb on + strand at 946.310 kb on - strand, within Synpcc7942_0941 at 946.465 kb on - strand, within Synpcc7942_0941 at 946.490 kb on + strand, within Synpcc7942_0941 at 946.507 kb on + strand, within Synpcc7942_0941 at 946.612 kb on - strand, within Synpcc7942_0941 at 946.615 kb on + strand, within Synpcc7942_0941 at 946.646 kb on - strand, within Synpcc7942_0941 at 946.646 kb on - strand, within Synpcc7942_0941 at 946.670 kb on + strand, within Synpcc7942_0941 at 946.670 kb on + strand, within Synpcc7942_0941 at 946.678 kb on + strand, within Synpcc7942_0941 at 946.685 kb on - strand, within Synpcc7942_0941 at 946.686 kb on - strand, within Synpcc7942_0941 at 946.690 kb on - strand, within Synpcc7942_0941 at 946.754 kb on + strand, within Synpcc7942_0941 at 946.754 kb on + strand, within Synpcc7942_0941 at 946.762 kb on - strand, within Synpcc7942_0941 at 946.796 kb on + strand, within Synpcc7942_0941 at 946.804 kb on + strand, within Synpcc7942_0941 at 946.814 kb on + strand, within Synpcc7942_0941 at 946.835 kb on - strand, within Synpcc7942_0941 at 946.916 kb on - strand, within Synpcc7942_0941 at 947.013 kb on + strand, within Synpcc7942_0941 at 947.048 kb on + strand, within Synpcc7942_0941 at 947.100 kb on + strand, within Synpcc7942_0941 at 947.153 kb on + strand, within Synpcc7942_0941 at 947.171 kb on + strand, within Synpcc7942_0941 at 947.393 kb on - strand, within Synpcc7942_0941 at 947.451 kb on - strand, within Synpcc7942_0941 at 947.464 kb on + strand, within Synpcc7942_0941 at 947.675 kb on + strand at 947.704 kb on - strand at 947.711 kb on + strand at 947.718 kb on + strand at 947.719 kb on - strand at 947.753 kb on - strand at 947.754 kb on - strand at 947.784 kb on - strand at 947.853 kb on + strand at 947.861 kb on - strand at 947.866 kb on + strand at 947.869 kb on - strand at 947.942 kb on + strand at 947.942 kb on + strand at 947.943 kb on - strand at 947.949 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12 remove 945,191 + -0.6 945,199 + -0.7 945,199 + +0.2 945,201 + +0.1 945,270 - -0.5 945,285 - +0.4 945,285 - +0.7 945,290 - +0.4 945,323 + +0.9 945,323 + -0.4 945,340 + Synpcc7942_0940 0.15 +1.0 945,343 + Synpcc7942_0940 0.15 +1.0 945,358 + Synpcc7942_0940 0.20 +0.4 945,365 + Synpcc7942_0940 0.22 +0.9 945,377 + Synpcc7942_0940 0.25 +0.2 945,385 - Synpcc7942_0940 0.27 +0.9 945,390 - Synpcc7942_0940 0.29 +0.7 945,512 + Synpcc7942_0940 0.64 +1.1 945,684 + +0.6 945,707 - +0.7 945,758 - +0.1 945,758 - -0.1 945,760 + -0.9 945,760 + -2.5 945,768 - -1.0 945,794 + -1.4 945,812 - -0.7 945,812 - +0.3 945,835 - -0.5 945,874 + -1.8 945,887 + +0.0 945,904 - -1.5 945,920 + -1.7 946,006 + +1.3 946,062 + +0.9 946,070 - -0.6 946,070 - -0.3 946,070 - +0.9 946,070 - -2.6 946,070 - +0.4 946,070 - +1.0 946,143 + -0.8 946,310 - Synpcc7942_0941 0.14 -0.9 946,465 - Synpcc7942_0941 0.23 -0.2 946,490 + Synpcc7942_0941 0.25 -1.2 946,507 + Synpcc7942_0941 0.26 -0.3 946,612 - Synpcc7942_0941 0.32 -1.1 946,615 + Synpcc7942_0941 0.32 -0.9 946,646 - Synpcc7942_0941 0.34 -0.5 946,646 - Synpcc7942_0941 0.34 -0.3 946,670 + Synpcc7942_0941 0.35 -0.3 946,670 + Synpcc7942_0941 0.35 -2.3 946,678 + Synpcc7942_0941 0.36 -2.2 946,685 - Synpcc7942_0941 0.36 -1.2 946,686 - Synpcc7942_0941 0.36 -0.6 946,690 - Synpcc7942_0941 0.37 -0.4 946,754 + Synpcc7942_0941 0.40 +0.0 946,754 + Synpcc7942_0941 0.40 -1.1 946,762 - Synpcc7942_0941 0.41 -1.0 946,796 + Synpcc7942_0941 0.43 -1.3 946,804 + Synpcc7942_0941 0.43 -0.8 946,814 + Synpcc7942_0941 0.44 -0.4 946,835 - Synpcc7942_0941 0.45 -3.1 946,916 - Synpcc7942_0941 0.50 -0.5 947,013 + Synpcc7942_0941 0.55 -1.2 947,048 + Synpcc7942_0941 0.58 -0.1 947,100 + Synpcc7942_0941 0.61 +0.2 947,153 + Synpcc7942_0941 0.64 -1.6 947,171 + Synpcc7942_0941 0.65 -0.6 947,393 - Synpcc7942_0941 0.78 -1.0 947,451 - Synpcc7942_0941 0.81 -0.6 947,464 + Synpcc7942_0941 0.82 +0.3 947,675 + -1.0 947,704 - +0.2 947,711 + -1.8 947,718 + -0.7 947,719 - -2.3 947,753 - +0.1 947,754 - +0.8 947,784 - -0.5 947,853 + +0.7 947,861 - -0.0 947,866 + +0.3 947,869 - +0.3 947,942 + +0.1 947,942 + -1.3 947,943 - -2.6 947,949 - -0.3
Or see this region's nucleotide sequence