Experiment: Flask growth in 60 uE Light-Dark 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroQ and Synpcc7942_0916 are separated by 10 nucleotides Synpcc7942_0916 and tRNA-Tyr are separated by 174 nucleotides tRNA-Tyr and tRNA-Thr are separated by 7 nucleotides tRNA-Thr and Synpcc7942_0917 are separated by 209 nucleotides Synpcc7942_0917 and aas are separated by 285 nucleotides
Synpcc7942_0915: aroQ - 3-dehydroquinate dehydratase, at 922,388 to 922,837
aroQ
Synpcc7942_0916: Synpcc7942_0916 - hypothetical protein, at 922,848 to 922,976
_0916
Synpcc7942_R0042: tRNA-Tyr - tRNA-Tyr, at 923,151 to 923,235
tRNA-Tyr
Synpcc7942_R0043: tRNA-Thr - tRNA-Thr, at 923,243 to 923,317
tRNA-Thr
Synpcc7942_0917: Synpcc7942_0917 - hypothetical protein, at 923,527 to 923,793
_0917
Synpcc7942_0918: aas - long-chain-fatty-acid CoA ligase, at 924,079 to 926,028
aas
Position (kb) 923
924 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 922.846 kb on + strand at 922.867 kb on + strand, within Synpcc7942_0916 at 922.880 kb on + strand, within Synpcc7942_0916 at 922.903 kb on + strand, within Synpcc7942_0916 at 922.989 kb on + strand at 923.051 kb on + strand at 923.059 kb on - strand at 923.059 kb on - strand at 923.061 kb on + strand at 923.062 kb on + strand at 923.072 kb on + strand at 923.348 kb on + strand at 923.348 kb on + strand at 923.356 kb on - strand at 923.356 kb on - strand at 923.356 kb on - strand at 923.368 kb on + strand at 923.381 kb on - strand at 923.408 kb on + strand at 923.409 kb on + strand at 923.409 kb on + strand at 923.416 kb on - strand at 923.416 kb on - strand at 923.416 kb on - strand at 923.417 kb on - strand at 923.438 kb on + strand at 923.438 kb on + strand at 923.446 kb on - strand at 923.446 kb on - strand at 923.498 kb on - strand at 923.512 kb on + strand at 923.512 kb on - strand at 923.517 kb on - strand at 923.520 kb on - strand at 923.523 kb on + strand at 923.525 kb on - strand at 923.549 kb on - strand at 923.552 kb on + strand at 923.559 kb on + strand, within Synpcc7942_0917 at 923.593 kb on - strand, within Synpcc7942_0917 at 923.604 kb on + strand, within Synpcc7942_0917 at 923.618 kb on + strand, within Synpcc7942_0917 at 923.626 kb on - strand, within Synpcc7942_0917 at 923.636 kb on - strand, within Synpcc7942_0917 at 923.659 kb on - strand, within Synpcc7942_0917 at 923.681 kb on - strand, within Synpcc7942_0917 at 923.707 kb on - strand, within Synpcc7942_0917 at 923.719 kb on - strand, within Synpcc7942_0917 at 923.812 kb on - strand at 923.815 kb on - strand at 923.817 kb on + strand at 923.817 kb on + strand at 923.825 kb on - strand at 923.833 kb on - strand at 923.853 kb on - strand at 923.858 kb on - strand at 923.869 kb on + strand at 923.869 kb on + strand at 923.869 kb on + strand at 923.874 kb on + strand at 923.882 kb on - strand at 923.909 kb on + strand at 923.917 kb on - strand at 923.922 kb on + strand at 923.941 kb on + strand at 923.949 kb on - strand at 923.957 kb on - strand at 923.975 kb on + strand at 923.977 kb on + strand at 924.009 kb on + strand at 924.009 kb on + strand at 924.014 kb on - strand at 924.017 kb on - strand at 924.068 kb on + strand at 924.075 kb on - strand at 924.110 kb on + strand at 924.118 kb on - strand at 924.120 kb on - strand at 924.132 kb on + strand at 924.147 kb on + strand at 924.152 kb on + strand at 924.160 kb on - strand at 924.171 kb on - strand at 924.204 kb on + strand at 924.268 kb on - strand at 924.329 kb on - strand, within aas at 924.334 kb on + strand, within aas at 924.334 kb on + strand, within aas at 924.380 kb on - strand, within aas at 924.400 kb on - strand, within aas at 924.403 kb on + strand, within aas at 924.422 kb on - strand, within aas at 924.465 kb on + strand, within aas at 924.468 kb on - strand, within aas at 924.473 kb on + strand, within aas at 924.473 kb on + strand, within aas at 924.473 kb on + strand, within aas at 924.473 kb on - strand, within aas at 924.473 kb on - strand, within aas at 924.481 kb on - strand, within aas at 924.481 kb on - strand, within aas at 924.481 kb on - strand, within aas at 924.520 kb on - strand at 924.522 kb on + strand, within aas at 924.522 kb on + strand, within aas at 924.530 kb on - strand, within aas at 924.540 kb on - strand, within aas at 924.541 kb on + strand, within aas at 924.541 kb on + strand, within aas at 924.549 kb on - strand, within aas at 924.556 kb on + strand, within aas at 924.572 kb on - strand, within aas at 924.589 kb on - strand, within aas at 924.591 kb on + strand, within aas at 924.595 kb on + strand, within aas at 924.599 kb on - strand, within aas at 924.607 kb on - strand, within aas at 924.614 kb on + strand, within aas at 924.637 kb on + strand, within aas at 924.699 kb on + strand, within aas at 924.702 kb on - strand, within aas at 924.702 kb on - strand, within aas at 924.707 kb on - strand, within aas at 924.716 kb on + strand, within aas at 924.716 kb on + strand, within aas at 924.726 kb on + strand, within aas at 924.733 kb on + strand, within aas at 924.782 kb on - strand, within aas at 924.784 kb on - strand, within aas
Per-strain Table
Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12 remove 922,846 + -0.6 922,867 + Synpcc7942_0916 0.15 +0.8 922,880 + Synpcc7942_0916 0.25 +2.3 922,903 + Synpcc7942_0916 0.43 +0.3 922,989 + +1.3 923,051 + +0.7 923,059 - +1.2 923,059 - +0.4 923,061 + +0.4 923,062 + +0.0 923,072 + +0.0 923,348 + -0.7 923,348 + +0.1 923,356 - -3.4 923,356 - -0.2 923,356 - +0.7 923,368 + +0.0 923,381 - -0.1 923,408 + -0.7 923,409 + +0.8 923,409 + +1.2 923,416 - -0.2 923,416 - -0.5 923,416 - -1.1 923,417 - +0.3 923,438 + -2.6 923,438 + -0.9 923,446 - -0.9 923,446 - -0.9 923,498 - -1.1 923,512 + -0.7 923,512 - -1.4 923,517 - -1.2 923,520 - -0.9 923,523 + -2.4 923,525 - -1.4 923,549 - -2.0 923,552 + -3.2 923,559 + Synpcc7942_0917 0.12 -1.2 923,593 - Synpcc7942_0917 0.25 -1.7 923,604 + Synpcc7942_0917 0.29 -2.3 923,618 + Synpcc7942_0917 0.34 -1.4 923,626 - Synpcc7942_0917 0.37 -2.3 923,636 - Synpcc7942_0917 0.41 -0.2 923,659 - Synpcc7942_0917 0.49 -2.4 923,681 - Synpcc7942_0917 0.58 -2.9 923,707 - Synpcc7942_0917 0.67 -2.4 923,719 - Synpcc7942_0917 0.72 -1.0 923,812 - -2.1 923,815 - -2.2 923,817 + -1.0 923,817 + -0.9 923,825 - -2.3 923,833 - -1.5 923,853 - -1.9 923,858 - -2.3 923,869 + -1.1 923,869 + -3.6 923,869 + -0.6 923,874 + -1.5 923,882 - -0.1 923,909 + -0.5 923,917 - +0.7 923,922 + -0.1 923,941 + +0.1 923,949 - +0.8 923,957 - -2.2 923,975 + -0.4 923,977 + -0.7 924,009 + +0.8 924,009 + -0.2 924,014 - -0.4 924,017 - -0.4 924,068 + -3.2 924,075 - -0.6 924,110 + +2.0 924,118 - -2.9 924,120 - -0.9 924,132 + -1.8 924,147 + -2.4 924,152 + -0.7 924,160 - -0.9 924,171 - -0.1 924,204 + +0.6 924,268 - +2.6 924,329 - aas Synpcc7942_0918 0.13 +0.3 924,334 + aas Synpcc7942_0918 0.13 -0.8 924,334 + aas Synpcc7942_0918 0.13 -0.2 924,380 - aas Synpcc7942_0918 0.15 -0.1 924,400 - aas Synpcc7942_0918 0.16 +0.3 924,403 + aas Synpcc7942_0918 0.17 -2.3 924,422 - aas Synpcc7942_0918 0.18 -0.2 924,465 + aas Synpcc7942_0918 0.20 -0.5 924,468 - aas Synpcc7942_0918 0.20 -1.8 924,473 + aas Synpcc7942_0918 0.20 -0.1 924,473 + aas Synpcc7942_0918 0.20 +0.3 924,473 + aas Synpcc7942_0918 0.20 +0.2 924,473 - aas Synpcc7942_0918 0.20 -0.4 924,473 - aas Synpcc7942_0918 0.20 -1.6 924,481 - aas Synpcc7942_0918 0.21 -1.3 924,481 - aas Synpcc7942_0918 0.21 -2.2 924,481 - aas Synpcc7942_0918 0.21 -1.7 924,520 - +1.0 924,522 + aas Synpcc7942_0918 0.23 +0.4 924,522 + aas Synpcc7942_0918 0.23 +0.0 924,530 - aas Synpcc7942_0918 0.23 +0.4 924,540 - aas Synpcc7942_0918 0.24 +0.1 924,541 + aas Synpcc7942_0918 0.24 -1.2 924,541 + aas Synpcc7942_0918 0.24 -0.3 924,549 - aas Synpcc7942_0918 0.24 -0.0 924,556 + aas Synpcc7942_0918 0.24 -1.4 924,572 - aas Synpcc7942_0918 0.25 -0.1 924,589 - aas Synpcc7942_0918 0.26 +0.0 924,591 + aas Synpcc7942_0918 0.26 -0.9 924,595 + aas Synpcc7942_0918 0.26 -3.0 924,599 - aas Synpcc7942_0918 0.27 -1.4 924,607 - aas Synpcc7942_0918 0.27 -0.3 924,614 + aas Synpcc7942_0918 0.27 -0.0 924,637 + aas Synpcc7942_0918 0.29 -0.5 924,699 + aas Synpcc7942_0918 0.32 +0.0 924,702 - aas Synpcc7942_0918 0.32 -0.1 924,702 - aas Synpcc7942_0918 0.32 +0.6 924,707 - aas Synpcc7942_0918 0.32 -0.8 924,716 + aas Synpcc7942_0918 0.33 -0.2 924,716 + aas Synpcc7942_0918 0.33 +0.4 924,726 + aas Synpcc7942_0918 0.33 +0.3 924,733 + aas Synpcc7942_0918 0.34 -0.1 924,782 - aas Synpcc7942_0918 0.36 -0.6 924,784 - aas Synpcc7942_0918 0.36 -0.2
Or see this region's nucleotide sequence