Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0882

Experiment: Flask growth in 60 uE Light-Dark 12:12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0880 and pheA are separated by 79 nucleotidespheA and lon are separated by 12 nucleotideslon and rpsJ are separated by 209 nucleotidesrpsJ and EF-Tu are separated by 73 nucleotides Synpcc7942_0880: Synpcc7942_0880 - hypothetical protein, at 886,915 to 887,472 _0880 Synpcc7942_0881: pheA - prephenate dehydratase, at 887,552 to 888,427 pheA Synpcc7942_0882: lon - Peptidase S16, lon-like, at 888,440 to 889,096 lon Synpcc7942_0883: rpsJ - 30S ribosomal protein S10, at 889,306 to 889,623 rpsJ Synpcc7942_0884: EF-Tu - elongation factor Tu, at 889,697 to 890,926 EF-Tu Position (kb) 888 889 890Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 887.540 kb on - strandat 887.542 kb on + strandat 887.556 kb on - strandat 887.556 kb on - strandat 888.387 kb on + strandat 888.387 kb on + strandat 888.395 kb on - strandat 888.395 kb on - strandat 888.395 kb on - strandat 888.445 kb on - strandat 888.591 kb on + strand, within lonat 888.591 kb on + strand, within lonat 888.612 kb on + strand, within lonat 888.614 kb on + strand, within lonat 888.625 kb on + strand, within lonat 888.626 kb on - strand, within lonat 888.681 kb on + strand, within lonat 888.701 kb on + strand, within lonat 888.711 kb on + strand, within lonat 888.714 kb on - strand, within lonat 888.719 kb on - strand, within lonat 888.721 kb on - strand, within lonat 888.731 kb on + strand, within lonat 888.760 kb on + strand, within lonat 888.772 kb on + strand, within lonat 888.780 kb on - strand, within lonat 888.835 kb on - strand, within lonat 888.889 kb on - strand, within lonat 888.902 kb on - strand, within lonat 888.912 kb on + strand, within lonat 888.982 kb on + strandat 889.031 kb on + strandat 889.112 kb on + strandat 889.112 kb on + strandat 889.112 kb on + strandat 889.112 kb on + strandat 889.112 kb on + strandat 889.120 kb on - strandat 889.120 kb on - strandat 889.134 kb on + strandat 889.144 kb on + strandat 889.152 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12
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887,540 - +1.0
887,542 + +0.5
887,556 - +0.0
887,556 - +0.2
888,387 + +0.3
888,387 + +0.8
888,395 - +0.5
888,395 - -0.6
888,395 - +1.2
888,445 - -0.1
888,591 + lon Synpcc7942_0882 0.23 -1.3
888,591 + lon Synpcc7942_0882 0.23 -3.6
888,612 + lon Synpcc7942_0882 0.26 +0.7
888,614 + lon Synpcc7942_0882 0.26 -2.0
888,625 + lon Synpcc7942_0882 0.28 -1.1
888,626 - lon Synpcc7942_0882 0.28 -0.7
888,681 + lon Synpcc7942_0882 0.37 -0.6
888,701 + lon Synpcc7942_0882 0.40 -1.8
888,711 + lon Synpcc7942_0882 0.41 -0.4
888,714 - lon Synpcc7942_0882 0.42 -0.0
888,719 - lon Synpcc7942_0882 0.42 -0.5
888,721 - lon Synpcc7942_0882 0.43 -2.9
888,731 + lon Synpcc7942_0882 0.44 +0.2
888,760 + lon Synpcc7942_0882 0.49 -0.7
888,772 + lon Synpcc7942_0882 0.51 -1.2
888,780 - lon Synpcc7942_0882 0.52 -0.4
888,835 - lon Synpcc7942_0882 0.60 -1.4
888,889 - lon Synpcc7942_0882 0.68 -1.1
888,902 - lon Synpcc7942_0882 0.70 -0.5
888,912 + lon Synpcc7942_0882 0.72 -1.5
888,982 + -0.6
889,031 + +0.0
889,112 + -2.1
889,112 + -3.7
889,112 + -1.6
889,112 + -0.9
889,112 + -0.1
889,120 - -1.7
889,120 - -0.9
889,134 + -3.4
889,144 + +2.0
889,152 - -1.2

Or see this region's nucleotide sequence