Experiment: Flask growth in 60 uE Light-Dark 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0824 and Synpcc7942_0825 are separated by 60 nucleotides Synpcc7942_0825 and Synpcc7942_0826 are separated by 38 nucleotides
Synpcc7942_0824: Synpcc7942_0824 - hypothetical protein, at 818,189 to 819,895
_0824
Synpcc7942_0825: Synpcc7942_0825 - hypothetical protein, at 819,956 to 820,654
_0825
Synpcc7942_0826: Synpcc7942_0826 - hypothetical protein, at 820,693 to 821,628
_0826
Position (kb) 819
820
821 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 818.964 kb on - strand, within Synpcc7942_0824 at 818.969 kb on - strand, within Synpcc7942_0824 at 818.985 kb on + strand, within Synpcc7942_0824 at 818.985 kb on + strand, within Synpcc7942_0824 at 818.993 kb on - strand, within Synpcc7942_0824 at 818.993 kb on - strand, within Synpcc7942_0824 at 818.993 kb on - strand, within Synpcc7942_0824 at 818.993 kb on - strand, within Synpcc7942_0824 at 819.116 kb on - strand, within Synpcc7942_0824 at 819.116 kb on - strand, within Synpcc7942_0824 at 819.160 kb on - strand, within Synpcc7942_0824 at 819.175 kb on + strand, within Synpcc7942_0824 at 819.211 kb on + strand, within Synpcc7942_0824 at 819.216 kb on + strand, within Synpcc7942_0824 at 819.224 kb on + strand, within Synpcc7942_0824 at 819.231 kb on + strand, within Synpcc7942_0824 at 819.231 kb on + strand, within Synpcc7942_0824 at 819.231 kb on + strand, within Synpcc7942_0824 at 819.232 kb on - strand, within Synpcc7942_0824 at 819.232 kb on - strand, within Synpcc7942_0824 at 819.239 kb on - strand, within Synpcc7942_0824 at 819.239 kb on - strand, within Synpcc7942_0824 at 819.239 kb on - strand, within Synpcc7942_0824 at 819.303 kb on + strand, within Synpcc7942_0824 at 819.460 kb on - strand, within Synpcc7942_0824 at 819.516 kb on + strand, within Synpcc7942_0824 at 819.555 kb on + strand, within Synpcc7942_0824 at 819.610 kb on + strand, within Synpcc7942_0824 at 819.633 kb on + strand, within Synpcc7942_0824 at 819.708 kb on + strand, within Synpcc7942_0824 at 819.761 kb on - strand at 819.792 kb on + strand at 819.800 kb on - strand at 819.818 kb on + strand at 819.818 kb on + strand at 820.229 kb on - strand, within Synpcc7942_0825 at 820.349 kb on + strand, within Synpcc7942_0825 at 820.463 kb on + strand, within Synpcc7942_0825 at 820.623 kb on + strand at 820.623 kb on + strand at 820.647 kb on - strand at 820.671 kb on - strand at 820.701 kb on - strand at 820.731 kb on + strand at 820.748 kb on + strand at 820.752 kb on + strand at 820.797 kb on + strand, within Synpcc7942_0826 at 820.797 kb on + strand, within Synpcc7942_0826 at 820.805 kb on - strand, within Synpcc7942_0826 at 820.805 kb on - strand, within Synpcc7942_0826 at 820.805 kb on - strand, within Synpcc7942_0826 at 820.833 kb on - strand, within Synpcc7942_0826 at 820.859 kb on + strand, within Synpcc7942_0826 at 820.868 kb on - strand, within Synpcc7942_0826 at 820.883 kb on + strand, within Synpcc7942_0826 at 820.883 kb on + strand, within Synpcc7942_0826 at 820.900 kb on + strand, within Synpcc7942_0826 at 820.908 kb on + strand, within Synpcc7942_0826 at 820.922 kb on + strand, within Synpcc7942_0826 at 820.933 kb on + strand, within Synpcc7942_0826 at 820.943 kb on - strand, within Synpcc7942_0826 at 820.959 kb on - strand, within Synpcc7942_0826 at 820.961 kb on + strand, within Synpcc7942_0826 at 820.978 kb on + strand, within Synpcc7942_0826 at 820.986 kb on - strand, within Synpcc7942_0826 at 820.986 kb on - strand, within Synpcc7942_0826 at 820.988 kb on + strand, within Synpcc7942_0826 at 820.990 kb on - strand, within Synpcc7942_0826 at 820.996 kb on - strand, within Synpcc7942_0826 at 821.038 kb on + strand, within Synpcc7942_0826 at 821.307 kb on + strand, within Synpcc7942_0826 at 821.315 kb on - strand, within Synpcc7942_0826 at 821.451 kb on + strand, within Synpcc7942_0826 at 821.456 kb on + strand, within Synpcc7942_0826 at 821.457 kb on + strand, within Synpcc7942_0826 at 821.457 kb on + strand, within Synpcc7942_0826 at 821.461 kb on + strand, within Synpcc7942_0826 at 821.464 kb on - strand, within Synpcc7942_0826 at 821.465 kb on - strand, within Synpcc7942_0826 at 821.631 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12 remove 818,964 - Synpcc7942_0824 0.45 +0.5 818,969 - Synpcc7942_0824 0.46 -1.4 818,985 + Synpcc7942_0824 0.47 +0.6 818,985 + Synpcc7942_0824 0.47 -1.6 818,993 - Synpcc7942_0824 0.47 +0.5 818,993 - Synpcc7942_0824 0.47 +0.1 818,993 - Synpcc7942_0824 0.47 +0.2 818,993 - Synpcc7942_0824 0.47 +0.9 819,116 - Synpcc7942_0824 0.54 -0.8 819,116 - Synpcc7942_0824 0.54 +1.0 819,160 - Synpcc7942_0824 0.57 +0.4 819,175 + Synpcc7942_0824 0.58 -0.2 819,211 + Synpcc7942_0824 0.60 -1.5 819,216 + Synpcc7942_0824 0.60 -1.4 819,224 + Synpcc7942_0824 0.61 +1.1 819,231 + Synpcc7942_0824 0.61 +0.2 819,231 + Synpcc7942_0824 0.61 +0.3 819,231 + Synpcc7942_0824 0.61 +0.6 819,232 - Synpcc7942_0824 0.61 +0.9 819,232 - Synpcc7942_0824 0.61 -0.3 819,239 - Synpcc7942_0824 0.62 -0.6 819,239 - Synpcc7942_0824 0.62 +0.0 819,239 - Synpcc7942_0824 0.62 -1.5 819,303 + Synpcc7942_0824 0.65 -1.3 819,460 - Synpcc7942_0824 0.74 -0.6 819,516 + Synpcc7942_0824 0.78 +0.0 819,555 + Synpcc7942_0824 0.80 -2.1 819,610 + Synpcc7942_0824 0.83 +1.1 819,633 + Synpcc7942_0824 0.85 -1.0 819,708 + Synpcc7942_0824 0.89 -1.3 819,761 - -1.5 819,792 + -0.7 819,800 - +0.2 819,818 + -0.3 819,818 + +0.2 820,229 - Synpcc7942_0825 0.39 -2.8 820,349 + Synpcc7942_0825 0.56 -1.2 820,463 + Synpcc7942_0825 0.73 -2.2 820,623 + +0.6 820,623 + -1.4 820,647 - -2.0 820,671 - -1.4 820,701 - +0.8 820,731 + -1.5 820,748 + +1.7 820,752 + +1.4 820,797 + Synpcc7942_0826 0.11 +1.1 820,797 + Synpcc7942_0826 0.11 -0.1 820,805 - Synpcc7942_0826 0.12 +2.0 820,805 - Synpcc7942_0826 0.12 +1.3 820,805 - Synpcc7942_0826 0.12 +2.6 820,833 - Synpcc7942_0826 0.15 -2.2 820,859 + Synpcc7942_0826 0.18 +0.7 820,868 - Synpcc7942_0826 0.19 +0.3 820,883 + Synpcc7942_0826 0.20 +1.2 820,883 + Synpcc7942_0826 0.20 +2.4 820,900 + Synpcc7942_0826 0.22 +2.2 820,908 + Synpcc7942_0826 0.23 +2.5 820,922 + Synpcc7942_0826 0.24 -0.3 820,933 + Synpcc7942_0826 0.26 +0.4 820,943 - Synpcc7942_0826 0.27 +1.9 820,959 - Synpcc7942_0826 0.28 +2.0 820,961 + Synpcc7942_0826 0.29 +1.1 820,978 + Synpcc7942_0826 0.30 +2.3 820,986 - Synpcc7942_0826 0.31 +2.3 820,986 - Synpcc7942_0826 0.31 -0.3 820,988 + Synpcc7942_0826 0.32 +1.5 820,990 - Synpcc7942_0826 0.32 +0.4 820,996 - Synpcc7942_0826 0.32 +1.8 821,038 + Synpcc7942_0826 0.37 +2.3 821,307 + Synpcc7942_0826 0.66 +0.8 821,315 - Synpcc7942_0826 0.66 +0.2 821,451 + Synpcc7942_0826 0.81 +1.7 821,456 + Synpcc7942_0826 0.82 +1.9 821,457 + Synpcc7942_0826 0.82 +2.4 821,457 + Synpcc7942_0826 0.82 +1.2 821,461 + Synpcc7942_0826 0.82 +1.6 821,464 - Synpcc7942_0826 0.82 +1.9 821,465 - Synpcc7942_0826 0.82 +2.1 821,631 - +1.3
Or see this region's nucleotide sequence