Experiment: Flask growth in 60 uE Light-Dark 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0795 and Synpcc7942_0796 are separated by 127 nucleotides Synpcc7942_0796 and Synpcc7942_0797 are separated by 289 nucleotides Synpcc7942_0797 and ruvC are separated by 48 nucleotides ruvC and Synpcc7942_0799 are separated by 5 nucleotides
Synpcc7942_0795: Synpcc7942_0795 - hypothetical protein, at 790,436 to 791,047
_0795
Synpcc7942_0796: Synpcc7942_0796 - hypothetical protein, at 791,175 to 791,720
_0796
Synpcc7942_0797: Synpcc7942_0797 - hypothetical protein, at 792,010 to 792,270
_0797
Synpcc7942_0798: ruvC - Holliday junction resolvase, at 792,319 to 792,804
ruvC
Synpcc7942_0799: Synpcc7942_0799 - Elongator protein 3, at 792,810 to 794,390
_0799
Position (kb) 792
793 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 791.011 kb on + strand at 791.019 kb on - strand at 791.050 kb on + strand at 791.050 kb on + strand at 791.050 kb on + strand at 791.050 kb on + strand at 791.058 kb on - strand at 791.058 kb on - strand at 791.060 kb on + strand at 791.060 kb on + strand at 791.073 kb on + strand at 791.081 kb on - strand at 791.130 kb on + strand at 791.167 kb on - strand at 791.167 kb on - strand at 791.175 kb on + strand at 791.747 kb on + strand at 791.755 kb on - strand at 791.822 kb on - strand at 791.933 kb on - strand at 791.933 kb on - strand at 792.023 kb on + strand at 792.036 kb on - strand, within Synpcc7942_0797 at 792.044 kb on + strand, within Synpcc7942_0797 at 792.044 kb on + strand, within Synpcc7942_0797 at 792.044 kb on - strand, within Synpcc7942_0797 at 792.063 kb on - strand, within Synpcc7942_0797 at 792.071 kb on - strand, within Synpcc7942_0797 at 792.083 kb on + strand, within Synpcc7942_0797 at 792.100 kb on + strand, within Synpcc7942_0797 at 792.202 kb on - strand, within Synpcc7942_0797 at 792.205 kb on - strand, within Synpcc7942_0797 at 792.207 kb on - strand, within Synpcc7942_0797 at 792.207 kb on - strand, within Synpcc7942_0797 at 792.240 kb on + strand, within Synpcc7942_0797 at 792.250 kb on + strand at 792.265 kb on + strand at 792.273 kb on - strand at 792.273 kb on - strand at 792.273 kb on - strand at 792.276 kb on + strand at 792.299 kb on - strand at 792.299 kb on - strand at 792.352 kb on - strand at 792.352 kb on - strand at 792.781 kb on + strand at 792.836 kb on + strand at 792.841 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12 remove 791,011 + +0.1 791,019 - +0.1 791,050 + +0.2 791,050 + -0.9 791,050 + -0.9 791,050 + +0.5 791,058 - -1.2 791,058 - -1.4 791,060 + +0.8 791,060 + -0.5 791,073 + -0.3 791,081 - -0.3 791,130 + +0.8 791,167 - -0.1 791,167 - +0.5 791,175 + -0.8 791,747 + +0.6 791,755 - -0.9 791,822 - +0.3 791,933 - -2.1 791,933 - -2.0 792,023 + -0.8 792,036 - Synpcc7942_0797 0.10 -1.7 792,044 + Synpcc7942_0797 0.13 -1.8 792,044 + Synpcc7942_0797 0.13 -1.3 792,044 - Synpcc7942_0797 0.13 -1.2 792,063 - Synpcc7942_0797 0.20 -3.8 792,071 - Synpcc7942_0797 0.23 -1.3 792,083 + Synpcc7942_0797 0.28 -2.2 792,100 + Synpcc7942_0797 0.34 -2.5 792,202 - Synpcc7942_0797 0.74 -1.4 792,205 - Synpcc7942_0797 0.75 -1.7 792,207 - Synpcc7942_0797 0.75 -0.2 792,207 - Synpcc7942_0797 0.75 -1.0 792,240 + Synpcc7942_0797 0.88 +0.3 792,250 + +1.3 792,265 + +0.1 792,273 - -0.4 792,273 - -0.3 792,273 - -1.0 792,276 + +0.9 792,299 - -0.4 792,299 - -0.9 792,352 - +1.8 792,352 - -0.2 792,781 + +0.7 792,836 + -1.1 792,841 + -0.0
Or see this region's nucleotide sequence