Experiment: Flask growth in 60 uE Light-Dark 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt folD and Synpcc7942_0778 are separated by 35 nucleotides Synpcc7942_0778 and Synpcc7942_0779 are separated by 92 nucleotides Synpcc7942_0779 and Synpcc7942_0780 overlap by 9 nucleotides
Synpcc7942_0777: folD - Methenyltetrahydrofolate cyclohydrolase, at 768,669 to 769,538
folD
Synpcc7942_0778: Synpcc7942_0778 - hypothetical protein, at 769,574 to 770,038
_0778
Synpcc7942_0779: Synpcc7942_0779 - metal dependent phosphohydrolase, at 770,131 to 772,593
_0779
Synpcc7942_0780: Synpcc7942_0780 - serine/threonine protein kinase, at 772,585 to 773,958
_0780
Position (kb) 770
771
772
773 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 769.541 kb on + strand at 769.549 kb on - strand at 769.594 kb on - strand at 770.006 kb on + strand at 770.006 kb on + strand at 770.006 kb on + strand at 770.020 kb on + strand at 770.032 kb on + strand at 770.032 kb on + strand at 770.032 kb on + strand at 770.038 kb on + strand at 770.040 kb on - strand at 770.040 kb on - strand at 770.040 kb on - strand at 770.040 kb on - strand at 770.040 kb on - strand at 770.043 kb on + strand at 770.051 kb on + strand at 770.051 kb on - strand at 770.051 kb on - strand at 770.059 kb on - strand at 770.074 kb on - strand at 770.077 kb on + strand at 770.077 kb on + strand at 770.085 kb on - strand at 770.087 kb on - strand at 770.092 kb on + strand at 770.110 kb on - strand at 770.126 kb on + strand at 770.126 kb on + strand at 770.134 kb on - strand at 770.134 kb on - strand at 770.134 kb on - strand at 770.148 kb on + strand at 770.156 kb on + strand at 770.190 kb on - strand at 770.231 kb on - strand at 770.289 kb on - strand at 770.289 kb on - strand at 770.346 kb on - strand at 771.364 kb on - strand, within Synpcc7942_0779 at 771.488 kb on - strand at 772.439 kb on - strand at 772.489 kb on + strand at 772.567 kb on + strand at 772.572 kb on + strand at 772.572 kb on + strand at 772.572 kb on + strand at 772.638 kb on + strand at 772.696 kb on + strand at 772.696 kb on + strand at 772.697 kb on + strand at 772.705 kb on - strand at 772.748 kb on + strand, within Synpcc7942_0780 at 772.807 kb on - strand, within Synpcc7942_0780 at 772.807 kb on - strand, within Synpcc7942_0780 at 772.854 kb on - strand, within Synpcc7942_0780 at 772.996 kb on + strand, within Synpcc7942_0780 at 772.996 kb on + strand, within Synpcc7942_0780 at 773.047 kb on - strand, within Synpcc7942_0780 at 773.087 kb on + strand, within Synpcc7942_0780 at 773.095 kb on + strand, within Synpcc7942_0780 at 773.103 kb on - strand at 773.103 kb on - strand, within Synpcc7942_0780 at 773.136 kb on + strand, within Synpcc7942_0780 at 773.144 kb on - strand, within Synpcc7942_0780 at 773.160 kb on - strand, within Synpcc7942_0780 at 773.160 kb on - strand, within Synpcc7942_0780 at 773.160 kb on - strand, within Synpcc7942_0780 at 773.191 kb on + strand, within Synpcc7942_0780 at 773.230 kb on + strand, within Synpcc7942_0780 at 773.268 kb on + strand, within Synpcc7942_0780 at 773.276 kb on - strand, within Synpcc7942_0780 at 773.298 kb on - strand, within Synpcc7942_0780 at 773.337 kb on + strand, within Synpcc7942_0780 at 773.340 kb on - strand, within Synpcc7942_0780 at 773.351 kb on + strand, within Synpcc7942_0780 at 773.351 kb on + strand, within Synpcc7942_0780 at 773.357 kb on - strand, within Synpcc7942_0780 at 773.359 kb on - strand, within Synpcc7942_0780 at 773.359 kb on - strand, within Synpcc7942_0780 at 773.359 kb on - strand, within Synpcc7942_0780 at 773.372 kb on - strand, within Synpcc7942_0780 at 773.380 kb on - strand, within Synpcc7942_0780 at 773.382 kb on - strand, within Synpcc7942_0780 at 773.382 kb on - strand, within Synpcc7942_0780 at 773.388 kb on - strand, within Synpcc7942_0780 at 773.388 kb on - strand, within Synpcc7942_0780 at 773.402 kb on + strand, within Synpcc7942_0780 at 773.402 kb on + strand, within Synpcc7942_0780 at 773.402 kb on + strand, within Synpcc7942_0780 at 773.402 kb on + strand, within Synpcc7942_0780 at 773.410 kb on - strand, within Synpcc7942_0780 at 773.415 kb on - strand, within Synpcc7942_0780 at 773.431 kb on - strand, within Synpcc7942_0780 at 773.432 kb on - strand, within Synpcc7942_0780 at 773.458 kb on + strand, within Synpcc7942_0780 at 773.458 kb on + strand, within Synpcc7942_0780 at 773.466 kb on - strand, within Synpcc7942_0780 at 773.466 kb on - strand, within Synpcc7942_0780 at 773.483 kb on + strand, within Synpcc7942_0780 at 773.483 kb on + strand, within Synpcc7942_0780 at 773.483 kb on + strand, within Synpcc7942_0780 at 773.491 kb on - strand at 773.491 kb on - strand, within Synpcc7942_0780 at 773.550 kb on + strand, within Synpcc7942_0780 at 773.550 kb on + strand, within Synpcc7942_0780 at 773.558 kb on - strand, within Synpcc7942_0780 at 773.558 kb on - strand, within Synpcc7942_0780 at 773.586 kb on - strand, within Synpcc7942_0780 at 773.592 kb on - strand, within Synpcc7942_0780
Per-strain Table
Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12 remove 769,541 + +1.2 769,549 - +0.2 769,594 - -1.1 770,006 + -0.9 770,006 + -1.1 770,006 + -2.2 770,020 + -0.1 770,032 + +0.6 770,032 + +0.1 770,032 + -0.7 770,038 + +0.4 770,040 - -1.5 770,040 - +2.0 770,040 - +0.4 770,040 - +0.8 770,040 - -1.2 770,043 + -2.4 770,051 + +0.0 770,051 - +0.5 770,051 - -0.6 770,059 - +2.5 770,074 - -1.6 770,077 + +2.0 770,077 + -0.2 770,085 - -0.1 770,087 - -1.0 770,092 + -0.1 770,110 - +0.6 770,126 + +1.7 770,126 + +2.0 770,134 - -0.2 770,134 - +3.0 770,134 - +2.5 770,148 + +0.6 770,156 + +1.2 770,190 - -0.9 770,231 - +1.1 770,289 - +2.0 770,289 - +2.5 770,346 - +1.3 771,364 - Synpcc7942_0779 0.50 +2.5 771,488 - -0.6 772,439 - +0.0 772,489 + -1.3 772,567 + +3.0 772,572 + +0.9 772,572 + +0.1 772,572 + +0.9 772,638 + +1.0 772,696 + +0.7 772,696 + +0.4 772,697 + -0.4 772,705 - +0.5 772,748 + Synpcc7942_0780 0.12 -0.9 772,807 - Synpcc7942_0780 0.16 -0.5 772,807 - Synpcc7942_0780 0.16 +0.5 772,854 - Synpcc7942_0780 0.20 +0.5 772,996 + Synpcc7942_0780 0.30 +0.1 772,996 + Synpcc7942_0780 0.30 -0.0 773,047 - Synpcc7942_0780 0.34 +1.5 773,087 + Synpcc7942_0780 0.37 +1.3 773,095 + Synpcc7942_0780 0.37 +0.4 773,103 - -0.0 773,103 - Synpcc7942_0780 0.38 +0.4 773,136 + Synpcc7942_0780 0.40 +0.5 773,144 - Synpcc7942_0780 0.41 +0.1 773,160 - Synpcc7942_0780 0.42 +0.6 773,160 - Synpcc7942_0780 0.42 -0.6 773,160 - Synpcc7942_0780 0.42 -0.7 773,191 + Synpcc7942_0780 0.44 +0.1 773,230 + Synpcc7942_0780 0.47 -0.8 773,268 + Synpcc7942_0780 0.50 +0.1 773,276 - Synpcc7942_0780 0.50 -1.9 773,298 - Synpcc7942_0780 0.52 -0.3 773,337 + Synpcc7942_0780 0.55 -1.9 773,340 - Synpcc7942_0780 0.55 +0.5 773,351 + Synpcc7942_0780 0.56 -0.2 773,351 + Synpcc7942_0780 0.56 -0.0 773,357 - Synpcc7942_0780 0.56 -2.0 773,359 - Synpcc7942_0780 0.56 -0.0 773,359 - Synpcc7942_0780 0.56 +1.3 773,359 - Synpcc7942_0780 0.56 +0.2 773,372 - Synpcc7942_0780 0.57 +0.8 773,380 - Synpcc7942_0780 0.58 +0.6 773,382 - Synpcc7942_0780 0.58 +0.4 773,382 - Synpcc7942_0780 0.58 -0.9 773,388 - Synpcc7942_0780 0.58 +1.6 773,388 - Synpcc7942_0780 0.58 +0.1 773,402 + Synpcc7942_0780 0.59 +2.0 773,402 + Synpcc7942_0780 0.59 +0.8 773,402 + Synpcc7942_0780 0.59 -1.5 773,402 + Synpcc7942_0780 0.59 -0.3 773,410 - Synpcc7942_0780 0.60 +1.3 773,415 - Synpcc7942_0780 0.60 +0.7 773,431 - Synpcc7942_0780 0.62 -2.1 773,432 - Synpcc7942_0780 0.62 +0.3 773,458 + Synpcc7942_0780 0.64 -1.3 773,458 + Synpcc7942_0780 0.64 +0.4 773,466 - Synpcc7942_0780 0.64 +0.8 773,466 - Synpcc7942_0780 0.64 +0.5 773,483 + Synpcc7942_0780 0.65 +1.7 773,483 + Synpcc7942_0780 0.65 +0.9 773,483 + Synpcc7942_0780 0.65 -3.1 773,491 - -1.0 773,491 - Synpcc7942_0780 0.66 +0.6 773,550 + Synpcc7942_0780 0.70 +0.4 773,550 + Synpcc7942_0780 0.70 -1.4 773,558 - Synpcc7942_0780 0.71 +0.1 773,558 - Synpcc7942_0780 0.71 +0.5 773,586 - Synpcc7942_0780 0.73 +0.8 773,592 - Synpcc7942_0780 0.73 +0.3
Or see this region's nucleotide sequence