Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0693

Experiment: Flask growth in 60 uE Light-Dark 12:12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0691 and Synpcc7942_0692 overlap by 4 nucleotidesSynpcc7942_0692 and Synpcc7942_0693 are separated by 61 nucleotidesSynpcc7942_0693 and rps1 are separated by 52 nucleotides Synpcc7942_0691: Synpcc7942_0691 - hypothetical protein, at 685,290 to 685,634 _0691 Synpcc7942_0692: Synpcc7942_0692 - hypothetical protein, at 685,631 to 686,185 _0692 Synpcc7942_0693: Synpcc7942_0693 - hypothetical protein, at 686,247 to 687,080 _0693 Synpcc7942_0694: rps1 - 30S ribosomal protein S1, at 687,133 to 688,056 rps1 Position (kb) 686 687 688Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 685.324 kb on + strandat 685.332 kb on - strand, within Synpcc7942_0691at 685.332 kb on - strand, within Synpcc7942_0691at 685.343 kb on + strand, within Synpcc7942_0691at 685.351 kb on - strand, within Synpcc7942_0691at 685.420 kb on + strand, within Synpcc7942_0691at 685.420 kb on + strand, within Synpcc7942_0691at 685.428 kb on - strand, within Synpcc7942_0691at 685.428 kb on - strand, within Synpcc7942_0691at 685.446 kb on - strand, within Synpcc7942_0691at 685.458 kb on + strand, within Synpcc7942_0691at 685.494 kb on + strand, within Synpcc7942_0691at 685.494 kb on + strand, within Synpcc7942_0691at 685.494 kb on + strand, within Synpcc7942_0691at 685.495 kb on + strand, within Synpcc7942_0691at 685.502 kb on + strand, within Synpcc7942_0691at 685.504 kb on + strand, within Synpcc7942_0691at 685.512 kb on - strand, within Synpcc7942_0691at 685.514 kb on + strand, within Synpcc7942_0691at 685.523 kb on - strand, within Synpcc7942_0691at 685.562 kb on + strand, within Synpcc7942_0691at 685.563 kb on + strand, within Synpcc7942_0691at 685.571 kb on - strand, within Synpcc7942_0691at 685.571 kb on - strand, within Synpcc7942_0691at 685.573 kb on + strand, within Synpcc7942_0691at 685.578 kb on + strand, within Synpcc7942_0691at 685.592 kb on - strand, within Synpcc7942_0691at 685.637 kb on - strandat 685.640 kb on + strandat 685.654 kb on + strandat 685.660 kb on + strandat 685.664 kb on + strandat 685.667 kb on - strandat 685.672 kb on - strandat 685.682 kb on + strandat 685.689 kb on - strand, within Synpcc7942_0692at 685.689 kb on - strand, within Synpcc7942_0692at 685.690 kb on - strand, within Synpcc7942_0692at 685.690 kb on - strand, within Synpcc7942_0692at 685.705 kb on + strandat 685.708 kb on - strand, within Synpcc7942_0692at 685.716 kb on + strand, within Synpcc7942_0692at 685.725 kb on + strand, within Synpcc7942_0692at 685.725 kb on + strand, within Synpcc7942_0692at 685.804 kb on + strand, within Synpcc7942_0692at 685.872 kb on + strand, within Synpcc7942_0692at 685.880 kb on - strand, within Synpcc7942_0692at 685.886 kb on - strand, within Synpcc7942_0692at 685.918 kb on + strand, within Synpcc7942_0692at 685.957 kb on + strand, within Synpcc7942_0692at 685.965 kb on - strand, within Synpcc7942_0692at 686.041 kb on - strand, within Synpcc7942_0692at 686.047 kb on - strand, within Synpcc7942_0692at 686.048 kb on + strand, within Synpcc7942_0692at 686.060 kb on - strand, within Synpcc7942_0692at 686.112 kb on + strand, within Synpcc7942_0692at 686.120 kb on + strand, within Synpcc7942_0692at 686.120 kb on + strand, within Synpcc7942_0692at 686.122 kb on - strand, within Synpcc7942_0692at 686.128 kb on - strand, within Synpcc7942_0692at 686.128 kb on - strand, within Synpcc7942_0692at 686.138 kb on - strandat 686.138 kb on - strandat 686.139 kb on - strandat 686.140 kb on - strandat 686.164 kb on - strandat 686.168 kb on + strandat 686.189 kb on + strandat 686.189 kb on + strandat 686.189 kb on + strandat 686.196 kb on - strandat 686.197 kb on - strandat 686.203 kb on - strandat 686.214 kb on + strandat 686.224 kb on - strandat 686.254 kb on + strandat 686.345 kb on + strand, within Synpcc7942_0693at 686.355 kb on + strand, within Synpcc7942_0693at 686.449 kb on + strand, within Synpcc7942_0693at 686.457 kb on - strand, within Synpcc7942_0693at 686.469 kb on + strand, within Synpcc7942_0693at 686.491 kb on + strand, within Synpcc7942_0693at 686.576 kb on - strand, within Synpcc7942_0693at 686.576 kb on - strandat 686.585 kb on + strand, within Synpcc7942_0693at 686.669 kb on - strand, within Synpcc7942_0693at 686.679 kb on - strand, within Synpcc7942_0693at 686.728 kb on - strand, within Synpcc7942_0693at 686.728 kb on - strand, within Synpcc7942_0693at 686.739 kb on + strand, within Synpcc7942_0693at 686.748 kb on - strand, within Synpcc7942_0693at 686.753 kb on - strand, within Synpcc7942_0693at 686.840 kb on + strand, within Synpcc7942_0693at 686.852 kb on + strand, within Synpcc7942_0693at 686.893 kb on + strand, within Synpcc7942_0693at 686.904 kb on + strand, within Synpcc7942_0693at 686.904 kb on + strand, within Synpcc7942_0693at 686.912 kb on - strand, within Synpcc7942_0693at 686.919 kb on + strand, within Synpcc7942_0693at 686.935 kb on + strand, within Synpcc7942_0693at 686.946 kb on + strand, within Synpcc7942_0693at 686.947 kb on + strand, within Synpcc7942_0693at 686.954 kb on - strand, within Synpcc7942_0693at 686.955 kb on - strand, within Synpcc7942_0693at 686.970 kb on + strand, within Synpcc7942_0693at 686.970 kb on + strand, within Synpcc7942_0693at 686.983 kb on - strand, within Synpcc7942_0693at 686.998 kb on + strandat 686.998 kb on + strandat 687.033 kb on + strandat 687.038 kb on + strandat 687.046 kb on + strandat 687.054 kb on - strandat 687.063 kb on + strandat 687.148 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12
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685,324 + +0.1
685,332 - Synpcc7942_0691 0.12 +1.0
685,332 - Synpcc7942_0691 0.12 -0.7
685,343 + Synpcc7942_0691 0.15 -1.8
685,351 - Synpcc7942_0691 0.18 +0.8
685,420 + Synpcc7942_0691 0.38 -0.2
685,420 + Synpcc7942_0691 0.38 +0.7
685,428 - Synpcc7942_0691 0.40 +0.5
685,428 - Synpcc7942_0691 0.40 +1.1
685,446 - Synpcc7942_0691 0.45 -0.5
685,458 + Synpcc7942_0691 0.49 +0.0
685,494 + Synpcc7942_0691 0.59 +0.9
685,494 + Synpcc7942_0691 0.59 +0.3
685,494 + Synpcc7942_0691 0.59 +0.1
685,495 + Synpcc7942_0691 0.59 +2.2
685,502 + Synpcc7942_0691 0.61 -1.4
685,504 + Synpcc7942_0691 0.62 +0.6
685,512 - Synpcc7942_0691 0.64 +1.3
685,514 + Synpcc7942_0691 0.65 -0.9
685,523 - Synpcc7942_0691 0.68 +0.4
685,562 + Synpcc7942_0691 0.79 +0.5
685,563 + Synpcc7942_0691 0.79 -1.0
685,571 - Synpcc7942_0691 0.81 +0.7
685,571 - Synpcc7942_0691 0.81 +0.9
685,573 + Synpcc7942_0691 0.82 +0.4
685,578 + Synpcc7942_0691 0.83 -1.6
685,592 - Synpcc7942_0691 0.88 +0.3
685,637 - +0.5
685,640 + +1.6
685,654 + +0.2
685,660 + +0.9
685,664 + -0.2
685,667 - -1.2
685,672 - +0.9
685,682 + -1.3
685,689 - Synpcc7942_0692 0.10 -0.4
685,689 - Synpcc7942_0692 0.10 +0.3
685,690 - Synpcc7942_0692 0.11 +0.7
685,690 - Synpcc7942_0692 0.11 +1.4
685,705 + -2.3
685,708 - Synpcc7942_0692 0.14 +0.0
685,716 + Synpcc7942_0692 0.15 +0.0
685,725 + Synpcc7942_0692 0.17 +1.1
685,725 + Synpcc7942_0692 0.17 -0.7
685,804 + Synpcc7942_0692 0.31 +0.5
685,872 + Synpcc7942_0692 0.43 -0.9
685,880 - Synpcc7942_0692 0.45 +0.5
685,886 - Synpcc7942_0692 0.46 +0.2
685,918 + Synpcc7942_0692 0.52 +0.1
685,957 + Synpcc7942_0692 0.59 +0.1
685,965 - Synpcc7942_0692 0.60 +0.3
686,041 - Synpcc7942_0692 0.74 -0.3
686,047 - Synpcc7942_0692 0.75 -0.1
686,048 + Synpcc7942_0692 0.75 +0.7
686,060 - Synpcc7942_0692 0.77 -0.5
686,112 + Synpcc7942_0692 0.87 +0.5
686,120 + Synpcc7942_0692 0.88 +0.8
686,120 + Synpcc7942_0692 0.88 +1.8
686,122 - Synpcc7942_0692 0.88 +0.1
686,128 - Synpcc7942_0692 0.90 +0.4
686,128 - Synpcc7942_0692 0.90 -0.2
686,138 - +0.4
686,138 - -1.5
686,139 - -0.6
686,140 - +0.3
686,164 - +0.6
686,168 + -0.6
686,189 + +0.3
686,189 + -2.0
686,189 + -0.1
686,196 - -0.1
686,197 - -0.7
686,203 - +0.2
686,214 + -0.1
686,224 - +0.6
686,254 + -0.1
686,345 + Synpcc7942_0693 0.12 -0.2
686,355 + Synpcc7942_0693 0.13 -1.4
686,449 + Synpcc7942_0693 0.24 -1.6
686,457 - Synpcc7942_0693 0.25 -2.0
686,469 + Synpcc7942_0693 0.27 -0.0
686,491 + Synpcc7942_0693 0.29 +0.3
686,576 - Synpcc7942_0693 0.39 -2.2
686,576 - -2.3
686,585 + Synpcc7942_0693 0.41 -1.5
686,669 - Synpcc7942_0693 0.51 -1.0
686,679 - Synpcc7942_0693 0.52 -1.0
686,728 - Synpcc7942_0693 0.58 -3.2
686,728 - Synpcc7942_0693 0.58 -1.6
686,739 + Synpcc7942_0693 0.59 -1.0
686,748 - Synpcc7942_0693 0.60 -1.2
686,753 - Synpcc7942_0693 0.61 -0.6
686,840 + Synpcc7942_0693 0.71 -2.6
686,852 + Synpcc7942_0693 0.73 -0.9
686,893 + Synpcc7942_0693 0.77 -1.4
686,904 + Synpcc7942_0693 0.79 -2.9
686,904 + Synpcc7942_0693 0.79 -2.9
686,912 - Synpcc7942_0693 0.80 -0.4
686,919 + Synpcc7942_0693 0.81 -0.6
686,935 + Synpcc7942_0693 0.82 +0.4
686,946 + Synpcc7942_0693 0.84 -0.6
686,947 + Synpcc7942_0693 0.84 -1.8
686,954 - Synpcc7942_0693 0.85 -1.8
686,955 - Synpcc7942_0693 0.85 +0.4
686,970 + Synpcc7942_0693 0.87 -0.4
686,970 + Synpcc7942_0693 0.87 -1.4
686,983 - Synpcc7942_0693 0.88 -0.7
686,998 + +1.5
686,998 + +0.2
687,033 + +0.4
687,038 + -0.9
687,046 + +0.8
687,054 - -0.1
687,063 + -1.4
687,148 - +1.0

Or see this region's nucleotide sequence