Experiment: Flask growth in 60 uE Light-Dark 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0561 and Synpcc7942_0562 are separated by 91 nucleotides Synpcc7942_0562 and uvrB are separated by 57 nucleotides uvrB and Synpcc7942_0564 are separated by 119 nucleotides Synpcc7942_0564 and Synpcc7942_0565 are separated by 100 nucleotides
Synpcc7942_0561: Synpcc7942_0561 - hypothetical protein, at 542,054 to 543,049
_0561
Synpcc7942_0562: Synpcc7942_0562 - hypothetical protein, at 543,141 to 543,596
_0562
Synpcc7942_0563: uvrB - excinuclease ABC subunit B, at 543,654 to 545,654
uvrB
Synpcc7942_0564: Synpcc7942_0564 - ATPase, at 545,774 to 546,487
_0564
Synpcc7942_0565: Synpcc7942_0565 - FHA domain containing protein, at 546,588 to 547,250
_0565
Position (kb) 543
544
545
546 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 542.708 kb on - strand, within Synpcc7942_0561 at 542.786 kb on - strand, within Synpcc7942_0561 at 542.796 kb on - strand, within Synpcc7942_0561 at 542.809 kb on - strand, within Synpcc7942_0561 at 542.816 kb on + strand, within Synpcc7942_0561 at 542.824 kb on - strand, within Synpcc7942_0561 at 542.892 kb on - strand, within Synpcc7942_0561 at 543.009 kb on + strand at 543.016 kb on + strand at 543.018 kb on + strand at 543.018 kb on + strand at 543.027 kb on + strand at 543.049 kb on - strand at 543.056 kb on + strand at 543.056 kb on + strand at 543.056 kb on + strand at 543.056 kb on + strand at 543.056 kb on + strand at 543.064 kb on - strand at 543.064 kb on - strand at 543.071 kb on - strand at 543.071 kb on - strand at 543.131 kb on + strand at 543.194 kb on + strand, within Synpcc7942_0562 at 543.202 kb on - strand, within Synpcc7942_0562 at 543.202 kb on - strand, within Synpcc7942_0562 at 543.202 kb on - strand, within Synpcc7942_0562 at 543.202 kb on - strand, within Synpcc7942_0562 at 543.313 kb on + strand, within Synpcc7942_0562 at 543.318 kb on + strand, within Synpcc7942_0562 at 543.319 kb on - strand, within Synpcc7942_0562 at 543.323 kb on + strand, within Synpcc7942_0562 at 543.345 kb on + strand, within Synpcc7942_0562 at 543.363 kb on - strand, within Synpcc7942_0562 at 543.363 kb on - strand, within Synpcc7942_0562 at 543.375 kb on + strand, within Synpcc7942_0562 at 543.382 kb on + strand, within Synpcc7942_0562 at 543.401 kb on - strand, within Synpcc7942_0562 at 543.432 kb on - strand, within Synpcc7942_0562 at 543.442 kb on - strand, within Synpcc7942_0562 at 543.454 kb on + strand, within Synpcc7942_0562 at 543.462 kb on - strand, within Synpcc7942_0562 at 543.483 kb on - strand, within Synpcc7942_0562 at 543.505 kb on + strand, within Synpcc7942_0562 at 543.513 kb on - strand, within Synpcc7942_0562 at 543.518 kb on - strand, within Synpcc7942_0562 at 543.552 kb on + strand at 543.553 kb on - strand at 543.554 kb on - strand at 543.564 kb on + strand at 543.565 kb on + strand at 543.572 kb on - strand at 543.572 kb on - strand at 543.572 kb on - strand at 543.590 kb on + strand at 543.710 kb on - strand at 543.710 kb on - strand at 543.821 kb on + strand at 543.840 kb on - strand at 543.861 kb on - strand, within uvrB at 544.073 kb on + strand, within uvrB at 544.120 kb on - strand, within uvrB at 544.127 kb on + strand, within uvrB at 544.128 kb on + strand, within uvrB at 544.539 kb on + strand, within uvrB at 544.552 kb on - strand, within uvrB at 544.603 kb on + strand, within uvrB at 544.603 kb on + strand, within uvrB at 544.611 kb on - strand, within uvrB at 544.711 kb on - strand, within uvrB at 544.747 kb on + strand, within uvrB at 544.747 kb on + strand, within uvrB at 544.755 kb on - strand, within uvrB at 544.759 kb on + strand, within uvrB at 544.766 kb on - strand, within uvrB at 544.817 kb on + strand, within uvrB at 544.958 kb on - strand, within uvrB at 545.377 kb on - strand, within uvrB at 545.437 kb on - strand, within uvrB at 545.437 kb on - strand, within uvrB at 545.447 kb on - strand, within uvrB at 545.455 kb on + strand at 545.466 kb on + strand at 545.471 kb on + strand at 545.471 kb on + strand at 545.471 kb on + strand at 545.471 kb on + strand at 545.471 kb on + strand at 545.479 kb on - strand at 545.479 kb on - strand at 545.479 kb on - strand at 545.479 kb on - strand at 545.479 kb on - strand at 545.544 kb on + strand at 545.548 kb on - strand at 545.551 kb on + strand at 545.551 kb on + strand at 545.569 kb on + strand at 545.622 kb on - strand at 545.622 kb on - strand at 545.639 kb on + strand at 545.639 kb on + strand at 545.647 kb on - strand at 545.708 kb on - strand at 545.722 kb on + strand at 545.735 kb on - strand at 545.740 kb on - strand at 545.750 kb on - strand at 545.750 kb on - strand at 545.771 kb on + strand at 545.779 kb on - strand at 545.795 kb on - strand at 545.798 kb on + strand at 545.823 kb on + strand at 545.839 kb on + strand at 545.854 kb on - strand, within Synpcc7942_0564 at 545.862 kb on + strand, within Synpcc7942_0564 at 545.868 kb on + strand, within Synpcc7942_0564 at 545.868 kb on + strand, within Synpcc7942_0564 at 545.868 kb on + strand, within Synpcc7942_0564 at 545.870 kb on - strand, within Synpcc7942_0564 at 545.896 kb on + strand, within Synpcc7942_0564 at 545.903 kb on - strand, within Synpcc7942_0564 at 545.928 kb on + strand, within Synpcc7942_0564 at 545.928 kb on + strand, within Synpcc7942_0564 at 545.928 kb on + strand, within Synpcc7942_0564 at 545.928 kb on + strand, within Synpcc7942_0564 at 545.928 kb on + strand, within Synpcc7942_0564 at 545.936 kb on - strand, within Synpcc7942_0564 at 545.936 kb on - strand, within Synpcc7942_0564 at 545.936 kb on - strand, within Synpcc7942_0564 at 545.936 kb on - strand, within Synpcc7942_0564 at 545.938 kb on + strand, within Synpcc7942_0564 at 545.938 kb on + strand, within Synpcc7942_0564 at 545.946 kb on - strand, within Synpcc7942_0564 at 545.946 kb on - strand, within Synpcc7942_0564 at 545.957 kb on + strand, within Synpcc7942_0564 at 545.957 kb on + strand, within Synpcc7942_0564 at 545.957 kb on + strand, within Synpcc7942_0564 at 545.957 kb on + strand, within Synpcc7942_0564 at 545.962 kb on + strand, within Synpcc7942_0564 at 545.964 kb on + strand, within Synpcc7942_0564 at 545.965 kb on - strand, within Synpcc7942_0564 at 545.970 kb on - strand, within Synpcc7942_0564 at 545.990 kb on + strand, within Synpcc7942_0564 at 545.990 kb on + strand, within Synpcc7942_0564 at 545.992 kb on - strand, within Synpcc7942_0564 at 545.995 kb on + strand, within Synpcc7942_0564 at 545.997 kb on - strand, within Synpcc7942_0564 at 545.998 kb on - strand, within Synpcc7942_0564 at 546.000 kb on + strand at 546.000 kb on + strand, within Synpcc7942_0564 at 546.000 kb on + strand, within Synpcc7942_0564 at 546.000 kb on + strand, within Synpcc7942_0564 at 546.003 kb on - strand, within Synpcc7942_0564 at 546.005 kb on + strand, within Synpcc7942_0564 at 546.008 kb on - strand, within Synpcc7942_0564 at 546.008 kb on - strand, within Synpcc7942_0564 at 546.013 kb on - strand, within Synpcc7942_0564 at 546.018 kb on + strand, within Synpcc7942_0564 at 546.018 kb on + strand, within Synpcc7942_0564 at 546.026 kb on - strand, within Synpcc7942_0564 at 546.041 kb on + strand, within Synpcc7942_0564 at 546.048 kb on + strand, within Synpcc7942_0564 at 546.049 kb on - strand, within Synpcc7942_0564 at 546.065 kb on + strand, within Synpcc7942_0564 at 546.073 kb on + strand, within Synpcc7942_0564 at 546.105 kb on + strand, within Synpcc7942_0564 at 546.105 kb on + strand, within Synpcc7942_0564 at 546.113 kb on - strand, within Synpcc7942_0564 at 546.113 kb on - strand, within Synpcc7942_0564 at 546.130 kb on - strand, within Synpcc7942_0564 at 546.155 kb on + strand, within Synpcc7942_0564 at 546.211 kb on + strand, within Synpcc7942_0564 at 546.211 kb on - strand, within Synpcc7942_0564 at 546.219 kb on - strand, within Synpcc7942_0564 at 546.265 kb on + strand, within Synpcc7942_0564 at 546.289 kb on + strand, within Synpcc7942_0564 at 546.309 kb on - strand, within Synpcc7942_0564 at 546.327 kb on + strand, within Synpcc7942_0564 at 546.334 kb on - strand, within Synpcc7942_0564 at 546.335 kb on - strand, within Synpcc7942_0564 at 546.346 kb on - strand, within Synpcc7942_0564 at 546.356 kb on + strand, within Synpcc7942_0564 at 546.361 kb on + strand, within Synpcc7942_0564 at 546.399 kb on + strand, within Synpcc7942_0564 at 546.460 kb on + strand at 546.465 kb on + strand at 546.468 kb on - strand at 546.498 kb on + strand at 546.516 kb on - strand at 546.522 kb on + strand at 546.535 kb on - strand at 546.583 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12 remove 542,708 - Synpcc7942_0561 0.66 +1.9 542,786 - Synpcc7942_0561 0.73 +1.9 542,796 - Synpcc7942_0561 0.74 +2.0 542,809 - Synpcc7942_0561 0.76 +1.6 542,816 + Synpcc7942_0561 0.77 +1.8 542,824 - Synpcc7942_0561 0.77 +2.1 542,892 - Synpcc7942_0561 0.84 +1.1 543,009 + +1.2 543,016 + +0.2 543,018 + +1.5 543,018 + +2.0 543,027 + +2.7 543,049 - -3.3 543,056 + +0.9 543,056 + +1.3 543,056 + +1.3 543,056 + +0.5 543,056 + +0.4 543,064 - -2.6 543,064 - -1.3 543,071 - +1.3 543,071 - -0.3 543,131 + +1.0 543,194 + Synpcc7942_0562 0.12 +0.3 543,202 - Synpcc7942_0562 0.13 +1.3 543,202 - Synpcc7942_0562 0.13 +2.0 543,202 - Synpcc7942_0562 0.13 -2.8 543,202 - Synpcc7942_0562 0.13 -0.5 543,313 + Synpcc7942_0562 0.38 +1.9 543,318 + Synpcc7942_0562 0.39 +0.4 543,319 - Synpcc7942_0562 0.39 +0.8 543,323 + Synpcc7942_0562 0.40 -0.3 543,345 + Synpcc7942_0562 0.45 -1.2 543,363 - Synpcc7942_0562 0.49 -0.2 543,363 - Synpcc7942_0562 0.49 +0.2 543,375 + Synpcc7942_0562 0.51 -0.2 543,382 + Synpcc7942_0562 0.53 +0.1 543,401 - Synpcc7942_0562 0.57 -0.9 543,432 - Synpcc7942_0562 0.64 +0.1 543,442 - Synpcc7942_0562 0.66 +0.2 543,454 + Synpcc7942_0562 0.69 +0.3 543,462 - Synpcc7942_0562 0.70 +0.7 543,483 - Synpcc7942_0562 0.75 -0.8 543,505 + Synpcc7942_0562 0.80 -1.5 543,513 - Synpcc7942_0562 0.82 -0.4 543,518 - Synpcc7942_0562 0.83 -0.2 543,552 + +0.7 543,553 - +1.0 543,554 - +0.5 543,564 + +0.1 543,565 + +0.5 543,572 - -2.3 543,572 - -0.0 543,572 - +0.7 543,590 + +0.1 543,710 - -0.5 543,710 - +0.9 543,821 + -0.7 543,840 - -0.5 543,861 - uvrB Synpcc7942_0563 0.10 -1.7 544,073 + uvrB Synpcc7942_0563 0.21 -0.9 544,120 - uvrB Synpcc7942_0563 0.23 -0.9 544,127 + uvrB Synpcc7942_0563 0.24 -1.9 544,128 + uvrB Synpcc7942_0563 0.24 -2.6 544,539 + uvrB Synpcc7942_0563 0.44 -0.4 544,552 - uvrB Synpcc7942_0563 0.45 -0.6 544,603 + uvrB Synpcc7942_0563 0.47 -1.2 544,603 + uvrB Synpcc7942_0563 0.47 -2.1 544,611 - uvrB Synpcc7942_0563 0.48 -0.9 544,711 - uvrB Synpcc7942_0563 0.53 -0.0 544,747 + uvrB Synpcc7942_0563 0.55 +0.1 544,747 + uvrB Synpcc7942_0563 0.55 -1.0 544,755 - uvrB Synpcc7942_0563 0.55 -1.6 544,759 + uvrB Synpcc7942_0563 0.55 -1.2 544,766 - uvrB Synpcc7942_0563 0.56 -0.6 544,817 + uvrB Synpcc7942_0563 0.58 +1.1 544,958 - uvrB Synpcc7942_0563 0.65 -1.9 545,377 - uvrB Synpcc7942_0563 0.86 -0.7 545,437 - uvrB Synpcc7942_0563 0.89 -1.4 545,437 - uvrB Synpcc7942_0563 0.89 -1.5 545,447 - uvrB Synpcc7942_0563 0.90 -0.4 545,455 + -1.8 545,466 + +0.0 545,471 + +0.6 545,471 + -0.6 545,471 + -0.4 545,471 + -0.8 545,471 + -0.5 545,479 - -1.8 545,479 - +0.1 545,479 - -0.6 545,479 - -1.4 545,479 - -1.5 545,544 + -0.6 545,548 - -0.6 545,551 + -1.4 545,551 + -1.6 545,569 + -0.9 545,622 - -0.4 545,622 - -0.1 545,639 + -2.0 545,639 + -1.2 545,647 - -3.2 545,708 - -1.2 545,722 + -1.0 545,735 - +0.8 545,740 - -0.7 545,750 - -1.2 545,750 - +0.3 545,771 + +0.0 545,779 - -0.1 545,795 - -0.8 545,798 + +0.4 545,823 + -1.4 545,839 + +0.0 545,854 - Synpcc7942_0564 0.11 +0.6 545,862 + Synpcc7942_0564 0.12 -0.4 545,868 + Synpcc7942_0564 0.13 +0.7 545,868 + Synpcc7942_0564 0.13 -0.7 545,868 + Synpcc7942_0564 0.13 +1.4 545,870 - Synpcc7942_0564 0.13 -0.4 545,896 + Synpcc7942_0564 0.17 -1.7 545,903 - Synpcc7942_0564 0.18 +0.6 545,928 + Synpcc7942_0564 0.22 +0.6 545,928 + Synpcc7942_0564 0.22 -1.8 545,928 + Synpcc7942_0564 0.22 +0.1 545,928 + Synpcc7942_0564 0.22 -0.3 545,928 + Synpcc7942_0564 0.22 +0.1 545,936 - Synpcc7942_0564 0.23 +0.1 545,936 - Synpcc7942_0564 0.23 +0.5 545,936 - Synpcc7942_0564 0.23 -2.5 545,936 - Synpcc7942_0564 0.23 +1.2 545,938 + Synpcc7942_0564 0.23 +0.7 545,938 + Synpcc7942_0564 0.23 -0.3 545,946 - Synpcc7942_0564 0.24 +0.5 545,946 - Synpcc7942_0564 0.24 -1.6 545,957 + Synpcc7942_0564 0.26 -0.2 545,957 + Synpcc7942_0564 0.26 -0.2 545,957 + Synpcc7942_0564 0.26 -2.1 545,957 + Synpcc7942_0564 0.26 +0.1 545,962 + Synpcc7942_0564 0.26 -0.3 545,964 + Synpcc7942_0564 0.27 +0.8 545,965 - Synpcc7942_0564 0.27 +0.3 545,970 - Synpcc7942_0564 0.27 +0.1 545,990 + Synpcc7942_0564 0.30 -0.6 545,990 + Synpcc7942_0564 0.30 +0.5 545,992 - Synpcc7942_0564 0.31 -0.1 545,995 + Synpcc7942_0564 0.31 +0.5 545,997 - Synpcc7942_0564 0.31 +1.3 545,998 - Synpcc7942_0564 0.31 +0.8 546,000 + +0.5 546,000 + Synpcc7942_0564 0.32 -0.5 546,000 + Synpcc7942_0564 0.32 -0.5 546,000 + Synpcc7942_0564 0.32 -1.9 546,003 - Synpcc7942_0564 0.32 +1.0 546,005 + Synpcc7942_0564 0.32 +0.6 546,008 - Synpcc7942_0564 0.33 +0.6 546,008 - Synpcc7942_0564 0.33 +0.0 546,013 - Synpcc7942_0564 0.33 +1.0 546,018 + Synpcc7942_0564 0.34 +0.5 546,018 + Synpcc7942_0564 0.34 -0.4 546,026 - Synpcc7942_0564 0.35 +0.2 546,041 + Synpcc7942_0564 0.37 +0.1 546,048 + Synpcc7942_0564 0.38 +0.7 546,049 - Synpcc7942_0564 0.39 +1.5 546,065 + Synpcc7942_0564 0.41 +0.8 546,073 + Synpcc7942_0564 0.42 -0.0 546,105 + Synpcc7942_0564 0.46 -1.1 546,105 + Synpcc7942_0564 0.46 +1.0 546,113 - Synpcc7942_0564 0.47 +0.5 546,113 - Synpcc7942_0564 0.47 -0.4 546,130 - Synpcc7942_0564 0.50 +0.6 546,155 + Synpcc7942_0564 0.53 +0.9 546,211 + Synpcc7942_0564 0.61 -0.9 546,211 - Synpcc7942_0564 0.61 -1.4 546,219 - Synpcc7942_0564 0.62 -0.9 546,265 + Synpcc7942_0564 0.69 +0.8 546,289 + Synpcc7942_0564 0.72 +0.4 546,309 - Synpcc7942_0564 0.75 -0.9 546,327 + Synpcc7942_0564 0.77 +0.4 546,334 - Synpcc7942_0564 0.78 +0.7 546,335 - Synpcc7942_0564 0.79 +0.8 546,346 - Synpcc7942_0564 0.80 +0.2 546,356 + Synpcc7942_0564 0.82 +1.1 546,361 + Synpcc7942_0564 0.82 -0.7 546,399 + Synpcc7942_0564 0.88 +0.2 546,460 + -1.0 546,465 + +0.6 546,468 - -1.1 546,498 + +0.9 546,516 - -0.2 546,522 + -0.5 546,535 - +0.8 546,583 + -1.2
Or see this region's nucleotide sequence