Experiment: Flask growth in 60 uE Light-Dark 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt srrB and Synpcc7942_0557 are separated by 194 nucleotides Synpcc7942_0557 and Synpcc7942_0558 are separated by 77 nucleotides Synpcc7942_0558 and hslO are separated by 51 nucleotides hslO and Synpcc7942_0560 are separated by 32 nucleotides
Synpcc7942_0556: srrB - two component transcriptional regulator, winged helix family, at 538,506 to 539,219
srrB
Synpcc7942_0557: Synpcc7942_0557 - hypothetical protein, at 539,414 to 539,605
_0557
Synpcc7942_0558: Synpcc7942_0558 - hypothetical protein, at 539,683 to 540,297
_0558
Synpcc7942_0559: hslO - Hsp33-like chaperonin, at 540,349 to 541,242
hslO
Synpcc7942_0560: Synpcc7942_0560 - ATPase, at 541,275 to 541,979
_0560
Position (kb) 539
540
541 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 538.736 kb on - strand, within srrB at 538.772 kb on - strand, within srrB at 538.776 kb on + strand at 538.821 kb on + strand, within srrB at 538.824 kb on - strand, within srrB at 538.834 kb on - strand at 538.854 kb on + strand, within srrB at 538.886 kb on + strand, within srrB at 538.894 kb on - strand, within srrB at 538.918 kb on + strand, within srrB at 538.955 kb on - strand at 538.992 kb on + strand, within srrB at 539.027 kb on + strand, within srrB at 539.029 kb on + strand, within srrB at 539.051 kb on + strand, within srrB at 539.051 kb on + strand at 539.092 kb on + strand, within srrB at 539.096 kb on + strand, within srrB at 539.096 kb on + strand, within srrB at 539.105 kb on - strand, within srrB at 539.110 kb on - strand, within srrB at 539.133 kb on - strand, within srrB at 539.147 kb on - strand, within srrB at 539.184 kb on + strand at 539.184 kb on + strand at 539.194 kb on - strand at 539.216 kb on + strand at 539.224 kb on - strand at 539.229 kb on - strand at 539.229 kb on - strand at 539.239 kb on + strand at 539.241 kb on - strand at 539.244 kb on + strand at 539.244 kb on + strand at 539.244 kb on + strand at 539.250 kb on + strand at 539.252 kb on - strand at 539.253 kb on + strand at 539.253 kb on + strand at 539.254 kb on - strand at 539.271 kb on - strand at 539.271 kb on - strand at 539.273 kb on + strand at 539.288 kb on - strand at 539.309 kb on + strand at 539.318 kb on + strand at 539.374 kb on - strand at 539.377 kb on + strand at 539.391 kb on - strand at 539.401 kb on + strand at 539.409 kb on + strand at 539.409 kb on - strand at 539.409 kb on - strand at 539.409 kb on - strand at 539.414 kb on + strand at 539.459 kb on + strand, within Synpcc7942_0557 at 539.459 kb on + strand, within Synpcc7942_0557 at 539.467 kb on - strand, within Synpcc7942_0557 at 539.474 kb on - strand, within Synpcc7942_0557 at 539.626 kb on - strand at 539.638 kb on + strand at 539.646 kb on - strand at 539.670 kb on - strand at 539.670 kb on - strand at 539.714 kb on + strand at 539.742 kb on + strand at 539.801 kb on + strand, within Synpcc7942_0558 at 539.811 kb on - strand, within Synpcc7942_0558 at 539.835 kb on - strand, within Synpcc7942_0558 at 539.865 kb on + strand, within Synpcc7942_0558 at 539.960 kb on - strand, within Synpcc7942_0558 at 540.012 kb on + strand, within Synpcc7942_0558 at 540.059 kb on - strand, within Synpcc7942_0558 at 540.131 kb on + strand, within Synpcc7942_0558 at 540.225 kb on + strand, within Synpcc7942_0558 at 540.228 kb on - strand, within Synpcc7942_0558 at 540.230 kb on + strand, within Synpcc7942_0558 at 540.233 kb on - strand, within Synpcc7942_0558 at 540.270 kb on - strand at 540.296 kb on + strand at 540.304 kb on - strand at 540.304 kb on - strand at 540.323 kb on - strand at 540.346 kb on + strand at 540.416 kb on + strand at 540.443 kb on + strand, within hslO at 540.443 kb on - strand, within hslO at 540.450 kb on - strand, within hslO at 540.451 kb on - strand, within hslO at 540.469 kb on - strand, within hslO at 540.479 kb on - strand, within hslO at 540.479 kb on - strand, within hslO at 540.479 kb on - strand, within hslO at 540.497 kb on + strand, within hslO at 540.524 kb on - strand, within hslO at 540.585 kb on + strand, within hslO at 540.637 kb on + strand, within hslO at 540.638 kb on + strand, within hslO at 540.678 kb on + strand, within hslO at 540.686 kb on - strand, within hslO at 540.686 kb on - strand, within hslO at 540.695 kb on + strand, within hslO at 540.695 kb on + strand, within hslO at 540.703 kb on - strand, within hslO at 540.703 kb on - strand, within hslO at 540.703 kb on - strand, within hslO at 540.703 kb on - strand, within hslO at 540.731 kb on + strand, within hslO at 540.753 kb on + strand, within hslO at 540.758 kb on + strand, within hslO at 540.786 kb on + strand, within hslO at 540.786 kb on + strand, within hslO at 540.802 kb on + strand, within hslO at 540.808 kb on + strand, within hslO at 540.810 kb on - strand, within hslO at 540.816 kb on - strand, within hslO at 540.848 kb on + strand, within hslO at 540.848 kb on + strand, within hslO at 540.848 kb on + strand, within hslO at 540.848 kb on - strand, within hslO at 540.851 kb on - strand, within hslO at 540.853 kb on + strand, within hslO at 540.854 kb on + strand, within hslO at 540.854 kb on + strand, within hslO at 540.854 kb on + strand, within hslO at 540.856 kb on - strand, within hslO at 540.856 kb on - strand, within hslO at 540.856 kb on - strand, within hslO at 540.856 kb on - strand, within hslO at 540.859 kb on + strand, within hslO at 540.862 kb on - strand, within hslO at 540.862 kb on - strand, within hslO at 540.862 kb on - strand, within hslO at 540.862 kb on - strand, within hslO at 540.862 kb on - strand, within hslO at 540.862 kb on - strand, within hslO at 540.862 kb on - strand, within hslO at 540.892 kb on + strand, within hslO at 540.902 kb on - strand, within hslO at 540.925 kb on + strand, within hslO at 540.931 kb on + strand, within hslO at 540.946 kb on - strand, within hslO at 540.991 kb on + strand, within hslO at 540.999 kb on - strand, within hslO at 541.016 kb on + strand, within hslO at 541.025 kb on - strand, within hslO at 541.034 kb on - strand, within hslO at 541.034 kb on - strand, within hslO at 541.084 kb on - strand, within hslO at 541.111 kb on + strand, within hslO at 541.111 kb on + strand, within hslO at 541.111 kb on + strand, within hslO at 541.111 kb on + strand, within hslO at 541.111 kb on + strand, within hslO at 541.119 kb on - strand, within hslO at 541.119 kb on - strand, within hslO at 541.119 kb on - strand, within hslO at 541.119 kb on - strand, within hslO at 541.135 kb on + strand, within hslO at 541.145 kb on + strand, within hslO at 541.153 kb on - strand at 541.153 kb on - strand at 541.171 kb on - strand at 541.207 kb on + strand at 541.225 kb on + strand at 541.228 kb on + strand at 541.233 kb on + strand at 541.234 kb on - strand at 541.238 kb on + strand at 541.238 kb on + strand at 541.258 kb on - strand at 541.290 kb on + strand at 541.295 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12 remove 538,736 - srrB Synpcc7942_0556 0.32 -0.5 538,772 - srrB Synpcc7942_0556 0.37 +1.2 538,776 + -0.3 538,821 + srrB Synpcc7942_0556 0.44 +1.7 538,824 - srrB Synpcc7942_0556 0.45 +0.7 538,834 - +1.2 538,854 + srrB Synpcc7942_0556 0.49 +1.1 538,886 + srrB Synpcc7942_0556 0.53 +0.1 538,894 - srrB Synpcc7942_0556 0.54 +1.1 538,918 + srrB Synpcc7942_0556 0.58 +0.5 538,955 - +0.5 538,992 + srrB Synpcc7942_0556 0.68 +1.8 539,027 + srrB Synpcc7942_0556 0.73 +1.3 539,029 + srrB Synpcc7942_0556 0.73 +1.4 539,051 + srrB Synpcc7942_0556 0.76 +2.3 539,051 + +0.2 539,092 + srrB Synpcc7942_0556 0.82 -0.6 539,096 + srrB Synpcc7942_0556 0.83 +1.0 539,096 + srrB Synpcc7942_0556 0.83 +0.6 539,105 - srrB Synpcc7942_0556 0.84 +1.3 539,110 - srrB Synpcc7942_0556 0.85 +0.8 539,133 - srrB Synpcc7942_0556 0.88 -0.8 539,147 - srrB Synpcc7942_0556 0.90 +1.2 539,184 + +1.7 539,184 + +0.3 539,194 - +2.4 539,216 + -1.2 539,224 - -0.0 539,229 - -0.3 539,229 - +0.7 539,239 + +1.3 539,241 - +1.3 539,244 + +0.9 539,244 + +0.3 539,244 + +0.7 539,250 + +0.3 539,252 - -0.0 539,253 + +0.8 539,253 + +2.1 539,254 - +1.8 539,271 - +0.8 539,271 - -0.8 539,273 + +1.3 539,288 - +1.1 539,309 + -0.3 539,318 + +1.4 539,374 - -0.7 539,377 + +0.5 539,391 - -0.8 539,401 + -0.6 539,409 + +0.9 539,409 - -0.2 539,409 - +0.4 539,409 - +0.9 539,414 + -0.0 539,459 + Synpcc7942_0557 0.23 +0.3 539,459 + Synpcc7942_0557 0.23 +1.4 539,467 - Synpcc7942_0557 0.28 +0.6 539,474 - Synpcc7942_0557 0.31 -0.1 539,626 - -0.6 539,638 + -2.0 539,646 - -0.0 539,670 - -1.4 539,670 - -1.0 539,714 + -1.3 539,742 + -2.2 539,801 + Synpcc7942_0558 0.19 +0.2 539,811 - Synpcc7942_0558 0.21 -1.6 539,835 - Synpcc7942_0558 0.25 -0.6 539,865 + Synpcc7942_0558 0.30 -1.5 539,960 - Synpcc7942_0558 0.45 -0.6 540,012 + Synpcc7942_0558 0.53 -2.0 540,059 - Synpcc7942_0558 0.61 +1.7 540,131 + Synpcc7942_0558 0.73 -1.0 540,225 + Synpcc7942_0558 0.88 -2.7 540,228 - Synpcc7942_0558 0.89 -0.3 540,230 + Synpcc7942_0558 0.89 -2.2 540,233 - Synpcc7942_0558 0.89 -1.3 540,270 - -0.5 540,296 + -1.8 540,304 - -0.3 540,304 - +0.0 540,323 - +0.7 540,346 + +1.3 540,416 + -1.2 540,443 + hslO Synpcc7942_0559 0.11 -2.3 540,443 - hslO Synpcc7942_0559 0.11 -1.5 540,450 - hslO Synpcc7942_0559 0.11 -1.5 540,451 - hslO Synpcc7942_0559 0.11 -0.5 540,469 - hslO Synpcc7942_0559 0.13 -0.4 540,479 - hslO Synpcc7942_0559 0.15 -1.8 540,479 - hslO Synpcc7942_0559 0.15 -0.8 540,479 - hslO Synpcc7942_0559 0.15 -1.1 540,497 + hslO Synpcc7942_0559 0.17 -0.2 540,524 - hslO Synpcc7942_0559 0.20 -0.5 540,585 + hslO Synpcc7942_0559 0.26 -1.1 540,637 + hslO Synpcc7942_0559 0.32 -2.0 540,638 + hslO Synpcc7942_0559 0.32 -1.4 540,678 + hslO Synpcc7942_0559 0.37 -0.5 540,686 - hslO Synpcc7942_0559 0.38 -1.5 540,686 - hslO Synpcc7942_0559 0.38 -1.2 540,695 + hslO Synpcc7942_0559 0.39 -0.8 540,695 + hslO Synpcc7942_0559 0.39 -3.0 540,703 - hslO Synpcc7942_0559 0.40 -0.7 540,703 - hslO Synpcc7942_0559 0.40 -2.6 540,703 - hslO Synpcc7942_0559 0.40 -0.4 540,703 - hslO Synpcc7942_0559 0.40 -0.2 540,731 + hslO Synpcc7942_0559 0.43 -0.4 540,753 + hslO Synpcc7942_0559 0.45 -1.1 540,758 + hslO Synpcc7942_0559 0.46 -1.5 540,786 + hslO Synpcc7942_0559 0.49 -1.7 540,786 + hslO Synpcc7942_0559 0.49 +0.4 540,802 + hslO Synpcc7942_0559 0.51 -0.2 540,808 + hslO Synpcc7942_0559 0.51 +0.5 540,810 - hslO Synpcc7942_0559 0.52 -0.3 540,816 - hslO Synpcc7942_0559 0.52 -1.5 540,848 + hslO Synpcc7942_0559 0.56 -0.1 540,848 + hslO Synpcc7942_0559 0.56 -0.3 540,848 + hslO Synpcc7942_0559 0.56 -1.4 540,848 - hslO Synpcc7942_0559 0.56 -1.8 540,851 - hslO Synpcc7942_0559 0.56 -1.7 540,853 + hslO Synpcc7942_0559 0.56 -2.4 540,854 + hslO Synpcc7942_0559 0.56 -0.4 540,854 + hslO Synpcc7942_0559 0.56 -0.2 540,854 + hslO Synpcc7942_0559 0.56 -1.1 540,856 - hslO Synpcc7942_0559 0.57 -1.0 540,856 - hslO Synpcc7942_0559 0.57 -1.6 540,856 - hslO Synpcc7942_0559 0.57 -1.0 540,856 - hslO Synpcc7942_0559 0.57 -1.8 540,859 + hslO Synpcc7942_0559 0.57 -0.7 540,862 - hslO Synpcc7942_0559 0.57 -1.1 540,862 - hslO Synpcc7942_0559 0.57 -1.4 540,862 - hslO Synpcc7942_0559 0.57 -0.3 540,862 - hslO Synpcc7942_0559 0.57 +3.4 540,862 - hslO Synpcc7942_0559 0.57 -0.9 540,862 - hslO Synpcc7942_0559 0.57 -0.7 540,862 - hslO Synpcc7942_0559 0.57 +0.3 540,892 + hslO Synpcc7942_0559 0.61 -0.2 540,902 - hslO Synpcc7942_0559 0.62 -0.8 540,925 + hslO Synpcc7942_0559 0.64 -0.2 540,931 + hslO Synpcc7942_0559 0.65 +1.7 540,946 - hslO Synpcc7942_0559 0.67 -0.8 540,991 + hslO Synpcc7942_0559 0.72 -1.2 540,999 - hslO Synpcc7942_0559 0.73 +1.0 541,016 + hslO Synpcc7942_0559 0.75 -0.8 541,025 - hslO Synpcc7942_0559 0.76 -0.6 541,034 - hslO Synpcc7942_0559 0.77 -0.7 541,034 - hslO Synpcc7942_0559 0.77 -1.3 541,084 - hslO Synpcc7942_0559 0.82 -0.4 541,111 + hslO Synpcc7942_0559 0.85 -4.2 541,111 + hslO Synpcc7942_0559 0.85 -0.6 541,111 + hslO Synpcc7942_0559 0.85 -3.5 541,111 + hslO Synpcc7942_0559 0.85 -0.0 541,111 + hslO Synpcc7942_0559 0.85 -0.6 541,119 - hslO Synpcc7942_0559 0.86 -1.4 541,119 - hslO Synpcc7942_0559 0.86 +0.1 541,119 - hslO Synpcc7942_0559 0.86 -1.3 541,119 - hslO Synpcc7942_0559 0.86 -0.7 541,135 + hslO Synpcc7942_0559 0.88 -0.4 541,145 + hslO Synpcc7942_0559 0.89 +0.0 541,153 - -0.2 541,153 - -0.6 541,171 - -2.0 541,207 + +1.1 541,225 + -1.4 541,228 + -0.5 541,233 + -2.2 541,234 - -3.0 541,238 + +1.7 541,238 + +0.2 541,258 - -0.6 541,290 + -0.3 541,295 + +2.0
Or see this region's nucleotide sequence