Experiment: Flask growth in 60 uE Light-Dark 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glmS and psaC are separated by 146 nucleotides psaC and acpP are separated by 458 nucleotides acpP and fabF are separated by 67 nucleotides
Synpcc7942_0534: glmS - D-fructose-6-phosphate amidotransferase, at 517,016 to 518,941
glmS
Synpcc7942_0535: psaC - photosystem I subunit VII, at 519,088 to 519,333
psaC
Synpcc7942_0536: acpP - acyl carrier protein, at 519,792 to 520,034
acpP
Synpcc7942_0537: fabF - 3-oxoacyl-(acyl carrier protein) synthase II, at 520,102 to 521,355
fabF
Position (kb) 519
520 Strain fitness (log2 ratio) -1
0
1 at 518.996 kb on - strand at 518.997 kb on + strand at 519.003 kb on - strand at 519.005 kb on - strand at 519.005 kb on - strand at 519.005 kb on - strand at 519.514 kb on + strand at 519.521 kb on + strand at 519.529 kb on - strand at 519.554 kb on + strand at 519.556 kb on + strand at 519.565 kb on + strand at 519.565 kb on + strand at 519.574 kb on + strand at 519.579 kb on + strand at 519.579 kb on + strand at 519.579 kb on + strand at 519.587 kb on - strand at 519.587 kb on - strand at 519.587 kb on - strand at 519.587 kb on - strand at 519.587 kb on - strand at 519.620 kb on + strand at 519.628 kb on - strand at 519.628 kb on - strand at 519.628 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12 remove 518,996 - -1.0 518,997 + -0.8 519,003 - -0.7 519,005 - -0.2 519,005 - -0.4 519,005 - +1.0 519,514 + +0.4 519,521 + -0.3 519,529 - +0.6 519,554 + -0.0 519,556 + -0.2 519,565 + -1.5 519,565 + -0.3 519,574 + -1.2 519,579 + -0.3 519,579 + -1.5 519,579 + -0.4 519,587 - +0.2 519,587 - -0.6 519,587 - +1.0 519,587 - +1.3 519,587 - +1.3 519,620 + +0.5 519,628 - -0.1 519,628 - +0.2 519,628 - -0.4
Or see this region's nucleotide sequence