Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0526

Experiment: Flask growth in 60 uE Light-Dark 12:12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaroB and lacF are separated by 79 nucleotideslacF and Synpcc7942_0527 are separated by 104 nucleotides Synpcc7942_0525: aroB - 3-dehydroquinate synthase, at 509,226 to 510,332 aroB Synpcc7942_0526: lacF - ABC-type sugar transport systems permease components-like, at 510,412 to 511,293 lacF Synpcc7942_0527: Synpcc7942_0527 - hypothetical protein, at 511,398 to 512,234 _0527 Position (kb) 510 511 512Strain fitness (log2 ratio) -2 -1 0 1 2at 510.369 kb on - strandat 510.370 kb on + strandat 510.378 kb on - strandat 510.396 kb on - strandat 510.406 kb on - strandat 510.416 kb on - strandat 510.421 kb on - strandat 510.486 kb on + strandat 510.494 kb on - strandat 510.532 kb on + strand, within lacFat 510.588 kb on + strand, within lacFat 510.613 kb on + strand, within lacFat 510.633 kb on - strand, within lacFat 510.670 kb on + strand, within lacFat 510.678 kb on - strand, within lacFat 510.718 kb on - strand, within lacFat 510.718 kb on - strand, within lacFat 510.730 kb on + strand, within lacFat 510.738 kb on - strand, within lacFat 510.786 kb on + strand, within lacFat 510.792 kb on + strand, within lacFat 510.802 kb on + strand, within lacFat 510.802 kb on + strand, within lacFat 510.805 kb on - strand, within lacFat 510.823 kb on - strand, within lacFat 510.825 kb on + strand, within lacFat 510.854 kb on + strand, within lacFat 510.874 kb on + strand, within lacFat 510.874 kb on + strand, within lacFat 510.877 kb on - strand, within lacFat 510.885 kb on + strand, within lacFat 510.893 kb on - strand, within lacFat 510.893 kb on - strand, within lacFat 510.919 kb on - strand, within lacFat 510.922 kb on + strand, within lacFat 510.926 kb on + strand, within lacFat 510.929 kb on - strand, within lacFat 510.936 kb on + strand, within lacFat 510.937 kb on - strand, within lacFat 510.965 kb on + strand, within lacFat 510.973 kb on - strand, within lacFat 510.988 kb on + strand, within lacFat 510.996 kb on - strand, within lacFat 511.018 kb on + strand, within lacFat 511.052 kb on + strand, within lacFat 511.060 kb on - strand, within lacFat 511.127 kb on - strand, within lacFat 511.135 kb on + strand, within lacFat 511.166 kb on - strand, within lacFat 511.203 kb on + strand, within lacFat 511.211 kb on - strandat 511.225 kb on - strandat 511.227 kb on + strandat 511.245 kb on - strandat 511.456 kb on + strandat 511.456 kb on - strandat 511.464 kb on - strandat 511.464 kb on - strandat 511.464 kb on - strandat 511.535 kb on - strand, within Synpcc7942_0527at 511.653 kb on + strand, within Synpcc7942_0527at 511.661 kb on - strand, within Synpcc7942_0527at 511.671 kb on - strand, within Synpcc7942_0527at 511.721 kb on - strand, within Synpcc7942_0527at 511.762 kb on + strand, within Synpcc7942_0527at 511.763 kb on + strand, within Synpcc7942_0527at 511.770 kb on - strand, within Synpcc7942_0527at 511.771 kb on - strand, within Synpcc7942_0527at 511.771 kb on - strand, within Synpcc7942_0527at 511.946 kb on - strand, within Synpcc7942_0527at 511.960 kb on + strand, within Synpcc7942_0527at 511.964 kb on - strand, within Synpcc7942_0527at 511.968 kb on - strand, within Synpcc7942_0527at 512.049 kb on - strand, within Synpcc7942_0527at 512.068 kb on - strand, within Synpcc7942_0527at 512.085 kb on + strand, within Synpcc7942_0527at 512.092 kb on + strand, within Synpcc7942_0527at 512.092 kb on + strand, within Synpcc7942_0527at 512.095 kb on + strand, within Synpcc7942_0527at 512.095 kb on + strand, within Synpcc7942_0527at 512.100 kb on - strand, within Synpcc7942_0527at 512.127 kb on - strand, within Synpcc7942_0527at 512.129 kb on - strand, within Synpcc7942_0527at 512.139 kb on - strand, within Synpcc7942_0527at 512.144 kb on + strand, within Synpcc7942_0527at 512.178 kb on - strandat 512.178 kb on - strandat 512.191 kb on + strandat 512.191 kb on + strandat 512.199 kb on - strandat 512.210 kb on - strandat 512.210 kb on - strandat 512.235 kb on + strandat 512.235 kb on + strandat 512.243 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12
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510,369 - -2.0
510,370 + +0.4
510,378 - -0.4
510,396 - +2.3
510,406 - -0.7
510,416 - +0.9
510,421 - -0.8
510,486 + -0.7
510,494 - -2.0
510,532 + lacF Synpcc7942_0526 0.14 -2.5
510,588 + lacF Synpcc7942_0526 0.20 -1.5
510,613 + lacF Synpcc7942_0526 0.23 -1.9
510,633 - lacF Synpcc7942_0526 0.25 +1.6
510,670 + lacF Synpcc7942_0526 0.29 -0.2
510,678 - lacF Synpcc7942_0526 0.30 -0.5
510,718 - lacF Synpcc7942_0526 0.35 -1.8
510,718 - lacF Synpcc7942_0526 0.35 -1.2
510,730 + lacF Synpcc7942_0526 0.36 -0.7
510,738 - lacF Synpcc7942_0526 0.37 -0.2
510,786 + lacF Synpcc7942_0526 0.42 -2.7
510,792 + lacF Synpcc7942_0526 0.43 -1.6
510,802 + lacF Synpcc7942_0526 0.44 -1.2
510,802 + lacF Synpcc7942_0526 0.44 -1.4
510,805 - lacF Synpcc7942_0526 0.45 -2.1
510,823 - lacF Synpcc7942_0526 0.47 +0.0
510,825 + lacF Synpcc7942_0526 0.47 -1.0
510,854 + lacF Synpcc7942_0526 0.50 -2.0
510,874 + lacF Synpcc7942_0526 0.52 -0.4
510,874 + lacF Synpcc7942_0526 0.52 +0.4
510,877 - lacF Synpcc7942_0526 0.53 -1.4
510,885 + lacF Synpcc7942_0526 0.54 -2.0
510,893 - lacF Synpcc7942_0526 0.55 -0.7
510,893 - lacF Synpcc7942_0526 0.55 +1.0
510,919 - lacF Synpcc7942_0526 0.57 -0.1
510,922 + lacF Synpcc7942_0526 0.58 +0.6
510,926 + lacF Synpcc7942_0526 0.58 -1.4
510,929 - lacF Synpcc7942_0526 0.59 -1.2
510,936 + lacF Synpcc7942_0526 0.59 -2.1
510,937 - lacF Synpcc7942_0526 0.60 -1.4
510,965 + lacF Synpcc7942_0526 0.63 -0.5
510,973 - lacF Synpcc7942_0526 0.64 -0.4
510,988 + lacF Synpcc7942_0526 0.65 -1.8
510,996 - lacF Synpcc7942_0526 0.66 -0.6
511,018 + lacF Synpcc7942_0526 0.69 -0.1
511,052 + lacF Synpcc7942_0526 0.73 -1.3
511,060 - lacF Synpcc7942_0526 0.73 -0.7
511,127 - lacF Synpcc7942_0526 0.81 -0.0
511,135 + lacF Synpcc7942_0526 0.82 -0.8
511,166 - lacF Synpcc7942_0526 0.85 -0.8
511,203 + lacF Synpcc7942_0526 0.90 -0.9
511,211 - -0.5
511,225 - -0.2
511,227 + -1.0
511,245 - -0.2
511,456 + +1.0
511,456 - -0.8
511,464 - +1.0
511,464 - +0.5
511,464 - -0.4
511,535 - Synpcc7942_0527 0.16 -0.8
511,653 + Synpcc7942_0527 0.30 +1.9
511,661 - Synpcc7942_0527 0.31 -0.0
511,671 - Synpcc7942_0527 0.33 -0.3
511,721 - Synpcc7942_0527 0.39 -0.0
511,762 + Synpcc7942_0527 0.43 +0.0
511,763 + Synpcc7942_0527 0.44 +0.2
511,770 - Synpcc7942_0527 0.44 -1.0
511,771 - Synpcc7942_0527 0.45 +2.7
511,771 - Synpcc7942_0527 0.45 +0.2
511,946 - Synpcc7942_0527 0.65 +0.1
511,960 + Synpcc7942_0527 0.67 -0.5
511,964 - Synpcc7942_0527 0.68 -1.5
511,968 - Synpcc7942_0527 0.68 -1.2
512,049 - Synpcc7942_0527 0.78 +0.0
512,068 - Synpcc7942_0527 0.80 -0.0
512,085 + Synpcc7942_0527 0.82 -0.6
512,092 + Synpcc7942_0527 0.83 +0.3
512,092 + Synpcc7942_0527 0.83 +0.1
512,095 + Synpcc7942_0527 0.83 -0.4
512,095 + Synpcc7942_0527 0.83 -0.7
512,100 - Synpcc7942_0527 0.84 -0.8
512,127 - Synpcc7942_0527 0.87 -2.2
512,129 - Synpcc7942_0527 0.87 +0.5
512,139 - Synpcc7942_0527 0.89 -0.9
512,144 + Synpcc7942_0527 0.89 -0.3
512,178 - +1.0
512,178 - -0.4
512,191 + -0.2
512,191 + +0.1
512,199 - -0.0
512,210 - -0.4
512,210 - -0.3
512,235 + +1.1
512,235 + -1.0
512,243 - +0.4

Or see this region's nucleotide sequence