Experiment: Flask growth in 60 uE Light-Dark 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0488 and aldA are separated by 20 nucleotides aldA and Synpcc7942_0490 are separated by 350 nucleotides
Synpcc7942_0488: Synpcc7942_0488 - dihydroorotase, at 474,316 to 475,644
_0488
Synpcc7942_0489: aldA - aldehyde dehydrogenase, at 475,665 to 477,044
aldA
Synpcc7942_0490: Synpcc7942_0490 - diguanylate cyclase with PAS/PAC sensor, at 477,395 to 479,440
_0490
Position (kb) 475
476
477
478 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 475.663 kb on + strand at 475.663 kb on - strand at 475.710 kb on + strand at 475.713 kb on - strand at 475.723 kb on - strand at 475.724 kb on - strand at 475.750 kb on + strand at 475.758 kb on - strand at 475.760 kb on + strand at 475.890 kb on - strand, within aldA at 475.905 kb on + strand, within aldA at 475.913 kb on - strand, within aldA at 475.913 kb on - strand, within aldA at 475.926 kb on + strand, within aldA at 475.934 kb on - strand, within aldA at 475.948 kb on + strand, within aldA at 475.948 kb on + strand, within aldA at 475.966 kb on - strand, within aldA at 476.078 kb on + strand, within aldA at 476.103 kb on + strand, within aldA at 476.103 kb on - strand, within aldA at 476.152 kb on - strand, within aldA at 476.162 kb on + strand, within aldA at 476.186 kb on + strand, within aldA at 476.194 kb on - strand, within aldA at 476.212 kb on + strand, within aldA at 476.212 kb on + strand, within aldA at 476.220 kb on - strand, within aldA at 476.220 kb on - strand, within aldA at 476.220 kb on - strand, within aldA at 476.222 kb on + strand, within aldA at 476.255 kb on + strand, within aldA at 476.268 kb on + strand, within aldA at 476.276 kb on - strand, within aldA at 476.286 kb on - strand, within aldA at 476.343 kb on - strand, within aldA at 476.347 kb on + strand, within aldA at 476.372 kb on + strand, within aldA at 476.380 kb on - strand, within aldA at 476.385 kb on - strand, within aldA at 476.399 kb on + strand, within aldA at 476.421 kb on + strand, within aldA at 476.478 kb on + strand, within aldA at 476.495 kb on + strand, within aldA at 476.498 kb on - strand, within aldA at 476.507 kb on - strand, within aldA at 476.541 kb on + strand, within aldA at 476.601 kb on + strand, within aldA at 476.614 kb on + strand, within aldA at 476.622 kb on - strand, within aldA at 476.637 kb on - strand, within aldA at 476.670 kb on - strand, within aldA at 476.672 kb on + strand, within aldA at 476.680 kb on + strand, within aldA at 476.685 kb on + strand, within aldA at 476.688 kb on - strand, within aldA at 476.692 kb on + strand, within aldA at 476.701 kb on - strand, within aldA at 476.710 kb on + strand, within aldA at 476.718 kb on - strand, within aldA at 476.728 kb on - strand, within aldA at 476.728 kb on - strand, within aldA at 476.730 kb on + strand, within aldA at 476.811 kb on - strand, within aldA at 476.833 kb on + strand, within aldA at 476.841 kb on - strand, within aldA at 476.847 kb on + strand, within aldA at 476.855 kb on - strand, within aldA at 476.874 kb on - strand, within aldA at 476.876 kb on + strand, within aldA at 476.876 kb on + strand, within aldA at 476.876 kb on + strand, within aldA at 476.897 kb on - strand, within aldA at 476.935 kb on + strand at 476.951 kb on + strand at 476.959 kb on - strand at 476.989 kb on - strand at 477.040 kb on - strand at 477.047 kb on - strand at 477.050 kb on - strand at 477.208 kb on + strand at 477.236 kb on + strand at 477.255 kb on + strand at 477.256 kb on - strand at 477.260 kb on + strand at 477.263 kb on - strand at 477.263 kb on - strand at 477.278 kb on - strand at 477.278 kb on - strand at 477.302 kb on + strand at 477.529 kb on + strand at 477.844 kb on - strand, within Synpcc7942_0490 at 477.882 kb on + strand, within Synpcc7942_0490 at 477.915 kb on + strand, within Synpcc7942_0490
Per-strain Table
Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12 remove 475,663 + -0.2 475,663 - +0.8 475,710 + +0.9 475,713 - -0.0 475,723 - -0.2 475,724 - +1.6 475,750 + -0.9 475,758 - -0.2 475,760 + +1.4 475,890 - aldA Synpcc7942_0489 0.16 -0.2 475,905 + aldA Synpcc7942_0489 0.17 +0.3 475,913 - aldA Synpcc7942_0489 0.18 -0.2 475,913 - aldA Synpcc7942_0489 0.18 +0.7 475,926 + aldA Synpcc7942_0489 0.19 -0.0 475,934 - aldA Synpcc7942_0489 0.19 +0.9 475,948 + aldA Synpcc7942_0489 0.21 +0.0 475,948 + aldA Synpcc7942_0489 0.21 +0.3 475,966 - aldA Synpcc7942_0489 0.22 -0.1 476,078 + aldA Synpcc7942_0489 0.30 +0.1 476,103 + aldA Synpcc7942_0489 0.32 +0.5 476,103 - aldA Synpcc7942_0489 0.32 +1.7 476,152 - aldA Synpcc7942_0489 0.35 -1.0 476,162 + aldA Synpcc7942_0489 0.36 +0.3 476,186 + aldA Synpcc7942_0489 0.38 +0.9 476,194 - aldA Synpcc7942_0489 0.38 -1.5 476,212 + aldA Synpcc7942_0489 0.40 +0.0 476,212 + aldA Synpcc7942_0489 0.40 -0.1 476,220 - aldA Synpcc7942_0489 0.40 -1.5 476,220 - aldA Synpcc7942_0489 0.40 -1.6 476,220 - aldA Synpcc7942_0489 0.40 +0.4 476,222 + aldA Synpcc7942_0489 0.40 +0.3 476,255 + aldA Synpcc7942_0489 0.43 -0.6 476,268 + aldA Synpcc7942_0489 0.44 -0.9 476,276 - aldA Synpcc7942_0489 0.44 +0.8 476,286 - aldA Synpcc7942_0489 0.45 -2.9 476,343 - aldA Synpcc7942_0489 0.49 -0.4 476,347 + aldA Synpcc7942_0489 0.49 +1.5 476,372 + aldA Synpcc7942_0489 0.51 -0.1 476,380 - aldA Synpcc7942_0489 0.52 -0.6 476,385 - aldA Synpcc7942_0489 0.52 -0.8 476,399 + aldA Synpcc7942_0489 0.53 -0.0 476,421 + aldA Synpcc7942_0489 0.55 +1.1 476,478 + aldA Synpcc7942_0489 0.59 +1.1 476,495 + aldA Synpcc7942_0489 0.60 -0.9 476,498 - aldA Synpcc7942_0489 0.60 +0.4 476,507 - aldA Synpcc7942_0489 0.61 +1.0 476,541 + aldA Synpcc7942_0489 0.63 -1.8 476,601 + aldA Synpcc7942_0489 0.68 +0.8 476,614 + aldA Synpcc7942_0489 0.69 +1.7 476,622 - aldA Synpcc7942_0489 0.69 +0.4 476,637 - aldA Synpcc7942_0489 0.70 +0.4 476,670 - aldA Synpcc7942_0489 0.73 -2.0 476,672 + aldA Synpcc7942_0489 0.73 -0.0 476,680 + aldA Synpcc7942_0489 0.74 -0.2 476,685 + aldA Synpcc7942_0489 0.74 +1.1 476,688 - aldA Synpcc7942_0489 0.74 -1.4 476,692 + aldA Synpcc7942_0489 0.74 -1.3 476,701 - aldA Synpcc7942_0489 0.75 +0.1 476,710 + aldA Synpcc7942_0489 0.76 +0.3 476,718 - aldA Synpcc7942_0489 0.76 -0.0 476,728 - aldA Synpcc7942_0489 0.77 -0.6 476,728 - aldA Synpcc7942_0489 0.77 -1.8 476,730 + aldA Synpcc7942_0489 0.77 -0.2 476,811 - aldA Synpcc7942_0489 0.83 -0.0 476,833 + aldA Synpcc7942_0489 0.85 -1.0 476,841 - aldA Synpcc7942_0489 0.85 +0.7 476,847 + aldA Synpcc7942_0489 0.86 -0.7 476,855 - aldA Synpcc7942_0489 0.86 -0.8 476,874 - aldA Synpcc7942_0489 0.88 +0.5 476,876 + aldA Synpcc7942_0489 0.88 -0.2 476,876 + aldA Synpcc7942_0489 0.88 +0.7 476,876 + aldA Synpcc7942_0489 0.88 +0.5 476,897 - aldA Synpcc7942_0489 0.89 -0.3 476,935 + -0.1 476,951 + +0.6 476,959 - -0.9 476,989 - -1.1 477,040 - -0.4 477,047 - +0.2 477,050 - -0.6 477,208 + +1.1 477,236 + +0.1 477,255 + -0.0 477,256 - +1.1 477,260 + +0.3 477,263 - -1.4 477,263 - +1.2 477,278 - -0.9 477,278 - +0.1 477,302 + +0.5 477,529 + +0.4 477,844 - Synpcc7942_0490 0.22 -0.2 477,882 + Synpcc7942_0490 0.24 +0.8 477,915 + Synpcc7942_0490 0.25 -0.0
Or see this region's nucleotide sequence