Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0464

Experiment: Flask growth in 60 uE Light-Dark 12:12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0462 and Synpcc7942_0463 overlap by 1 nucleotidesSynpcc7942_0463 and Synpcc7942_0464 are separated by 90 nucleotidesSynpcc7942_0464 and Synpcc7942_0465 are separated by 88 nucleotidesSynpcc7942_0465 and Synpcc7942_0466 are separated by 89 nucleotides Synpcc7942_0462: Synpcc7942_0462 - hypothetical protein, at 449,370 to 449,957 _0462 Synpcc7942_0463: Synpcc7942_0463 - protein tyrosine phosphatase, at 449,957 to 450,448 _0463 Synpcc7942_0464: Synpcc7942_0464 - hypothetical protein, at 450,539 to 450,934 _0464 Synpcc7942_0465: Synpcc7942_0465 - hypothetical protein, at 451,023 to 451,748 _0465 Synpcc7942_0466: Synpcc7942_0466 - Cellulose synthase (UDP-forming), at 451,838 to 454,087 _0466 Position (kb) 450 451Strain fitness (log2 ratio) -2 -1 0 1at 449.602 kb on + strand, within Synpcc7942_0462at 449.602 kb on + strand, within Synpcc7942_0462at 449.602 kb on + strand, within Synpcc7942_0462at 449.610 kb on - strand, within Synpcc7942_0462at 449.610 kb on - strand, within Synpcc7942_0462at 449.617 kb on + strand, within Synpcc7942_0462at 449.637 kb on + strand, within Synpcc7942_0462at 449.637 kb on + strand, within Synpcc7942_0462at 449.637 kb on + strand, within Synpcc7942_0462at 449.637 kb on + strand, within Synpcc7942_0462at 449.645 kb on - strand, within Synpcc7942_0462at 449.645 kb on - strand, within Synpcc7942_0462at 449.652 kb on + strand, within Synpcc7942_0462at 449.664 kb on + strand, within Synpcc7942_0462at 449.671 kb on + strand, within Synpcc7942_0462at 449.672 kb on - strand, within Synpcc7942_0462at 449.672 kb on - strand, within Synpcc7942_0462at 449.683 kb on + strand, within Synpcc7942_0462at 449.685 kb on + strand, within Synpcc7942_0462at 449.731 kb on - strand, within Synpcc7942_0462at 449.736 kb on + strand, within Synpcc7942_0462at 449.805 kb on - strand, within Synpcc7942_0462at 449.810 kb on - strand, within Synpcc7942_0462at 449.876 kb on - strand, within Synpcc7942_0462at 449.886 kb on + strand, within Synpcc7942_0462at 449.886 kb on + strand, within Synpcc7942_0462at 449.887 kb on + strand, within Synpcc7942_0462at 449.894 kb on - strandat 449.900 kb on - strandat 449.967 kb on + strandat 449.967 kb on + strandat 449.967 kb on + strandat 449.975 kb on - strandat 449.975 kb on - strandat 449.975 kb on - strandat 449.975 kb on - strandat 449.981 kb on + strandat 450.048 kb on - strand, within Synpcc7942_0463at 450.060 kb on + strand, within Synpcc7942_0463at 450.068 kb on - strand, within Synpcc7942_0463at 450.070 kb on - strand, within Synpcc7942_0463at 450.131 kb on + strand, within Synpcc7942_0463at 450.132 kb on - strandat 450.165 kb on - strand, within Synpcc7942_0463at 450.189 kb on + strand, within Synpcc7942_0463at 450.216 kb on - strand, within Synpcc7942_0463at 450.237 kb on + strand, within Synpcc7942_0463at 450.237 kb on + strand, within Synpcc7942_0463at 450.245 kb on - strand, within Synpcc7942_0463at 450.245 kb on - strand, within Synpcc7942_0463at 450.245 kb on - strand, within Synpcc7942_0463at 450.247 kb on + strand, within Synpcc7942_0463at 450.250 kb on + strand, within Synpcc7942_0463at 450.358 kb on - strand, within Synpcc7942_0463at 450.358 kb on - strand, within Synpcc7942_0463at 450.405 kb on + strandat 450.408 kb on - strandat 450.423 kb on - strandat 450.425 kb on + strandat 450.433 kb on - strandat 450.483 kb on - strandat 450.508 kb on - strandat 450.508 kb on - strandat 450.508 kb on - strandat 450.508 kb on - strandat 450.528 kb on - strandat 450.544 kb on + strandat 450.554 kb on + strandat 450.618 kb on + strand, within Synpcc7942_0464at 450.622 kb on - strand, within Synpcc7942_0464at 450.641 kb on - strand, within Synpcc7942_0464at 450.644 kb on + strand, within Synpcc7942_0464at 450.660 kb on + strand, within Synpcc7942_0464at 450.668 kb on - strand, within Synpcc7942_0464at 450.693 kb on + strand, within Synpcc7942_0464at 450.708 kb on - strand, within Synpcc7942_0464at 450.716 kb on + strand, within Synpcc7942_0464at 450.718 kb on + strand, within Synpcc7942_0464at 450.737 kb on + strand, within Synpcc7942_0464at 450.737 kb on + strand, within Synpcc7942_0464at 450.737 kb on + strand, within Synpcc7942_0464at 450.738 kb on + strand, within Synpcc7942_0464at 450.738 kb on + strand, within Synpcc7942_0464at 450.742 kb on + strand, within Synpcc7942_0464at 450.745 kb on - strand, within Synpcc7942_0464at 450.745 kb on - strand, within Synpcc7942_0464at 450.750 kb on - strand, within Synpcc7942_0464at 450.765 kb on + strand, within Synpcc7942_0464at 450.767 kb on + strand, within Synpcc7942_0464at 450.777 kb on + strand, within Synpcc7942_0464at 450.777 kb on + strand, within Synpcc7942_0464at 450.805 kb on - strand, within Synpcc7942_0464at 450.837 kb on - strand, within Synpcc7942_0464at 450.861 kb on - strand, within Synpcc7942_0464at 450.861 kb on - strand, within Synpcc7942_0464at 451.034 kb on - strandat 451.034 kb on - strandat 451.037 kb on + strandat 451.037 kb on + strandat 451.037 kb on + strandat 451.045 kb on - strandat 451.045 kb on - strandat 451.125 kb on + strand, within Synpcc7942_0465at 451.125 kb on + strand, within Synpcc7942_0465at 451.133 kb on - strand, within Synpcc7942_0465at 451.134 kb on - strand, within Synpcc7942_0465at 451.136 kb on + strand, within Synpcc7942_0465at 451.143 kb on + strand, within Synpcc7942_0465at 451.164 kb on + strand, within Synpcc7942_0465at 451.200 kb on + strand, within Synpcc7942_0465at 451.227 kb on + strand, within Synpcc7942_0465at 451.235 kb on - strand, within Synpcc7942_0465at 451.250 kb on + strand, within Synpcc7942_0465at 451.250 kb on + strand, within Synpcc7942_0465at 451.302 kb on - strand, within Synpcc7942_0465at 451.304 kb on - strand, within Synpcc7942_0465at 451.311 kb on - strand, within Synpcc7942_0465at 451.311 kb on - strand, within Synpcc7942_0465at 451.331 kb on + strand, within Synpcc7942_0465at 451.339 kb on - strand, within Synpcc7942_0465at 451.348 kb on + strand, within Synpcc7942_0465at 451.362 kb on - strand, within Synpcc7942_0465at 451.378 kb on - strand, within Synpcc7942_0465at 451.385 kb on + strand, within Synpcc7942_0465at 451.387 kb on + strand, within Synpcc7942_0465at 451.393 kb on - strand, within Synpcc7942_0465at 451.443 kb on - strand, within Synpcc7942_0465at 451.445 kb on + strand, within Synpcc7942_0465at 451.453 kb on - strand, within Synpcc7942_0465at 451.460 kb on + strand, within Synpcc7942_0465at 451.524 kb on + strand, within Synpcc7942_0465at 451.525 kb on + strand, within Synpcc7942_0465at 451.525 kb on + strand, within Synpcc7942_0465at 451.529 kb on + strand, within Synpcc7942_0465at 451.574 kb on - strand, within Synpcc7942_0465at 451.587 kb on + strand, within Synpcc7942_0465at 451.595 kb on - strand, within Synpcc7942_0465at 451.595 kb on - strand, within Synpcc7942_0465at 451.625 kb on + strand, within Synpcc7942_0465at 451.654 kb on + strand, within Synpcc7942_0465at 451.668 kb on - strand, within Synpcc7942_0465at 451.682 kb on + strandat 451.690 kb on - strandat 451.705 kb on - strandat 451.719 kb on + strandat 451.735 kb on + strandat 451.757 kb on + strandat 451.774 kb on + strandat 451.779 kb on + strandat 451.805 kb on - strandat 451.810 kb on - strandat 451.812 kb on + strandat 451.820 kb on - strandat 451.847 kb on + strandat 451.855 kb on - strandat 451.884 kb on + strandat 451.892 kb on - strandat 451.932 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12
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449,602 + Synpcc7942_0462 0.39 +0.5
449,602 + Synpcc7942_0462 0.39 +0.5
449,602 + Synpcc7942_0462 0.39 -0.8
449,610 - Synpcc7942_0462 0.41 -0.1
449,610 - Synpcc7942_0462 0.41 -0.0
449,617 + Synpcc7942_0462 0.42 -0.0
449,637 + Synpcc7942_0462 0.45 +0.9
449,637 + Synpcc7942_0462 0.45 +0.0
449,637 + Synpcc7942_0462 0.45 +0.4
449,637 + Synpcc7942_0462 0.45 +1.1
449,645 - Synpcc7942_0462 0.47 +0.6
449,645 - Synpcc7942_0462 0.47 +0.4
449,652 + Synpcc7942_0462 0.48 +1.2
449,664 + Synpcc7942_0462 0.50 +1.1
449,671 + Synpcc7942_0462 0.51 +0.5
449,672 - Synpcc7942_0462 0.51 +0.5
449,672 - Synpcc7942_0462 0.51 +0.2
449,683 + Synpcc7942_0462 0.53 -1.3
449,685 + Synpcc7942_0462 0.54 -0.3
449,731 - Synpcc7942_0462 0.61 -0.3
449,736 + Synpcc7942_0462 0.62 +1.0
449,805 - Synpcc7942_0462 0.74 -0.5
449,810 - Synpcc7942_0462 0.75 -0.7
449,876 - Synpcc7942_0462 0.86 -0.7
449,886 + Synpcc7942_0462 0.88 +0.2
449,886 + Synpcc7942_0462 0.88 +0.5
449,887 + Synpcc7942_0462 0.88 -0.0
449,894 - +1.0
449,900 - +0.2
449,967 + +0.4
449,967 + +0.6
449,967 + -2.2
449,975 - +0.2
449,975 - -0.3
449,975 - +0.1
449,975 - +0.1
449,981 + -1.4
450,048 - Synpcc7942_0463 0.18 -1.7
450,060 + Synpcc7942_0463 0.21 +0.1
450,068 - Synpcc7942_0463 0.23 +0.4
450,070 - Synpcc7942_0463 0.23 -0.6
450,131 + Synpcc7942_0463 0.35 +1.2
450,132 - +1.3
450,165 - Synpcc7942_0463 0.42 -0.1
450,189 + Synpcc7942_0463 0.47 +0.4
450,216 - Synpcc7942_0463 0.53 -2.3
450,237 + Synpcc7942_0463 0.57 +1.0
450,237 + Synpcc7942_0463 0.57 +0.5
450,245 - Synpcc7942_0463 0.59 +0.5
450,245 - Synpcc7942_0463 0.59 +1.0
450,245 - Synpcc7942_0463 0.59 +0.1
450,247 + Synpcc7942_0463 0.59 -0.5
450,250 + Synpcc7942_0463 0.60 +0.6
450,358 - Synpcc7942_0463 0.82 -0.8
450,358 - Synpcc7942_0463 0.82 -0.1
450,405 + -2.1
450,408 - -1.4
450,423 - +0.7
450,425 + -0.2
450,433 - -0.8
450,483 - -0.0
450,508 - -0.1
450,508 - -0.3
450,508 - -0.4
450,508 - -0.0
450,528 - +0.0
450,544 + -0.3
450,554 + -0.1
450,618 + Synpcc7942_0464 0.20 -0.4
450,622 - Synpcc7942_0464 0.21 -2.5
450,641 - Synpcc7942_0464 0.26 -1.2
450,644 + Synpcc7942_0464 0.27 -0.6
450,660 + Synpcc7942_0464 0.31 -0.8
450,668 - Synpcc7942_0464 0.33 -0.5
450,693 + Synpcc7942_0464 0.39 -1.0
450,708 - Synpcc7942_0464 0.43 -0.6
450,716 + Synpcc7942_0464 0.45 -1.0
450,718 + Synpcc7942_0464 0.45 -0.8
450,737 + Synpcc7942_0464 0.50 -0.4
450,737 + Synpcc7942_0464 0.50 -2.5
450,737 + Synpcc7942_0464 0.50 -0.7
450,738 + Synpcc7942_0464 0.50 -0.3
450,738 + Synpcc7942_0464 0.50 -0.4
450,742 + Synpcc7942_0464 0.51 -1.6
450,745 - Synpcc7942_0464 0.52 -0.0
450,745 - Synpcc7942_0464 0.52 -1.0
450,750 - Synpcc7942_0464 0.53 -1.7
450,765 + Synpcc7942_0464 0.57 -0.9
450,767 + Synpcc7942_0464 0.58 -0.8
450,777 + Synpcc7942_0464 0.60 -1.1
450,777 + Synpcc7942_0464 0.60 +1.3
450,805 - Synpcc7942_0464 0.67 -0.9
450,837 - Synpcc7942_0464 0.75 -0.9
450,861 - Synpcc7942_0464 0.81 -1.9
450,861 - Synpcc7942_0464 0.81 +0.2
451,034 - -0.2
451,034 - +0.4
451,037 + -0.2
451,037 + -0.0
451,037 + +0.0
451,045 - +0.4
451,045 - +0.6
451,125 + Synpcc7942_0465 0.14 -0.5
451,125 + Synpcc7942_0465 0.14 -0.4
451,133 - Synpcc7942_0465 0.15 +1.2
451,134 - Synpcc7942_0465 0.15 +0.8
451,136 + Synpcc7942_0465 0.16 -1.7
451,143 + Synpcc7942_0465 0.17 -0.6
451,164 + Synpcc7942_0465 0.19 -0.2
451,200 + Synpcc7942_0465 0.24 +0.1
451,227 + Synpcc7942_0465 0.28 +0.6
451,235 - Synpcc7942_0465 0.29 -2.0
451,250 + Synpcc7942_0465 0.31 +0.1
451,250 + Synpcc7942_0465 0.31 +1.0
451,302 - Synpcc7942_0465 0.38 +0.7
451,304 - Synpcc7942_0465 0.39 -0.9
451,311 - Synpcc7942_0465 0.40 +0.4
451,311 - Synpcc7942_0465 0.40 -0.2
451,331 + Synpcc7942_0465 0.42 -1.6
451,339 - Synpcc7942_0465 0.44 +0.5
451,348 + Synpcc7942_0465 0.45 +0.2
451,362 - Synpcc7942_0465 0.47 +0.7
451,378 - Synpcc7942_0465 0.49 +0.0
451,385 + Synpcc7942_0465 0.50 +0.1
451,387 + Synpcc7942_0465 0.50 +0.3
451,393 - Synpcc7942_0465 0.51 +0.3
451,443 - Synpcc7942_0465 0.58 +0.5
451,445 + Synpcc7942_0465 0.58 -0.4
451,453 - Synpcc7942_0465 0.59 +0.3
451,460 + Synpcc7942_0465 0.60 -0.1
451,524 + Synpcc7942_0465 0.69 +1.2
451,525 + Synpcc7942_0465 0.69 -0.6
451,525 + Synpcc7942_0465 0.69 -0.6
451,529 + Synpcc7942_0465 0.70 -2.0
451,574 - Synpcc7942_0465 0.76 -1.4
451,587 + Synpcc7942_0465 0.78 +0.8
451,595 - Synpcc7942_0465 0.79 +1.0
451,595 - Synpcc7942_0465 0.79 +0.5
451,625 + Synpcc7942_0465 0.83 +0.6
451,654 + Synpcc7942_0465 0.87 -0.5
451,668 - Synpcc7942_0465 0.89 +0.7
451,682 + -1.2
451,690 - +1.2
451,705 - +0.7
451,719 + -0.1
451,735 + +1.4
451,757 + +0.1
451,774 + -0.6
451,779 + +0.5
451,805 - -0.0
451,810 - +0.1
451,812 + +0.2
451,820 - -0.5
451,847 + -0.0
451,855 - +1.0
451,884 + +0.9
451,892 - +0.5
451,932 + -0.8

Or see this region's nucleotide sequence