Experiment: Flask growth in 60 uE Light-Dark 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bioB and Synpcc7942_0420 are separated by 47 nucleotides Synpcc7942_0420 and Synpcc7942_0421 are separated by 31 nucleotides Synpcc7942_0421 and Synpcc7942_0422 are separated by 200 nucleotides
Synpcc7942_0419: bioB - biotin synthase, at 408,941 to 409,903
bioB
Synpcc7942_0420: Synpcc7942_0420 - hypothetical protein, at 409,951 to 411,516
_0420
Synpcc7942_0421: Synpcc7942_0421 - hypothetical protein, at 411,548 to 411,946
_0421
Synpcc7942_0422: Synpcc7942_0422 - hypothetical protein, at 412,147 to 413,289
_0422
Position (kb) 409
410
411
412 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 408.953 kb on - strand at 409.897 kb on + strand at 409.948 kb on + strand at 409.956 kb on - strand at 410.051 kb on - strand at 410.081 kb on + strand at 410.089 kb on - strand at 410.089 kb on - strand at 410.100 kb on + strand at 410.171 kb on + strand, within Synpcc7942_0420 at 410.257 kb on + strand, within Synpcc7942_0420 at 410.267 kb on + strand, within Synpcc7942_0420 at 410.275 kb on - strand, within Synpcc7942_0420 at 410.281 kb on + strand, within Synpcc7942_0420 at 410.314 kb on - strand, within Synpcc7942_0420 at 410.337 kb on - strand, within Synpcc7942_0420 at 410.337 kb on - strand, within Synpcc7942_0420 at 410.428 kb on + strand, within Synpcc7942_0420 at 410.446 kb on + strand, within Synpcc7942_0420 at 410.452 kb on + strand, within Synpcc7942_0420 at 410.575 kb on + strand, within Synpcc7942_0420 at 410.605 kb on + strand, within Synpcc7942_0420 at 410.605 kb on + strand, within Synpcc7942_0420 at 410.613 kb on - strand, within Synpcc7942_0420 at 410.761 kb on + strand, within Synpcc7942_0420 at 410.761 kb on + strand, within Synpcc7942_0420 at 410.766 kb on + strand, within Synpcc7942_0420 at 410.766 kb on + strand, within Synpcc7942_0420 at 410.774 kb on - strand, within Synpcc7942_0420 at 410.822 kb on - strand, within Synpcc7942_0420 at 410.860 kb on + strand, within Synpcc7942_0420 at 410.860 kb on + strand, within Synpcc7942_0420 at 410.860 kb on + strand, within Synpcc7942_0420 at 410.867 kb on + strand, within Synpcc7942_0420 at 410.867 kb on + strand, within Synpcc7942_0420 at 410.868 kb on - strand, within Synpcc7942_0420 at 410.872 kb on + strand, within Synpcc7942_0420 at 410.872 kb on + strand, within Synpcc7942_0420 at 410.875 kb on - strand, within Synpcc7942_0420 at 410.918 kb on + strand, within Synpcc7942_0420 at 410.929 kb on - strand, within Synpcc7942_0420 at 410.953 kb on - strand, within Synpcc7942_0420 at 411.033 kb on - strand, within Synpcc7942_0420 at 411.063 kb on + strand, within Synpcc7942_0420 at 411.071 kb on - strand, within Synpcc7942_0420 at 411.114 kb on - strand, within Synpcc7942_0420 at 411.243 kb on + strand, within Synpcc7942_0420 at 411.243 kb on + strand, within Synpcc7942_0420 at 411.243 kb on + strand, within Synpcc7942_0420 at 411.251 kb on - strand, within Synpcc7942_0420 at 411.251 kb on - strand, within Synpcc7942_0420 at 411.272 kb on + strand, within Synpcc7942_0420 at 411.297 kb on - strand, within Synpcc7942_0420 at 411.332 kb on + strand, within Synpcc7942_0420 at 411.334 kb on + strand, within Synpcc7942_0420 at 411.350 kb on + strand, within Synpcc7942_0420 at 411.350 kb on + strand, within Synpcc7942_0420 at 411.350 kb on + strand, within Synpcc7942_0420 at 411.363 kb on - strand at 411.381 kb on + strand at 411.381 kb on + strand at 411.390 kb on + strand at 411.398 kb on - strand at 411.398 kb on - strand at 411.433 kb on + strand at 411.566 kb on - strand at 411.607 kb on + strand, within Synpcc7942_0421 at 411.614 kb on + strand, within Synpcc7942_0421 at 411.622 kb on - strand, within Synpcc7942_0421 at 411.622 kb on - strand, within Synpcc7942_0421 at 411.676 kb on - strand, within Synpcc7942_0421 at 411.682 kb on - strand, within Synpcc7942_0421 at 411.682 kb on - strand, within Synpcc7942_0421 at 411.682 kb on - strand, within Synpcc7942_0421 at 411.682 kb on - strand, within Synpcc7942_0421 at 411.715 kb on - strand, within Synpcc7942_0421 at 411.742 kb on - strand, within Synpcc7942_0421 at 411.742 kb on - strand, within Synpcc7942_0421 at 411.804 kb on + strand, within Synpcc7942_0421 at 411.804 kb on + strand, within Synpcc7942_0421 at 411.804 kb on + strand, within Synpcc7942_0421 at 411.812 kb on - strand, within Synpcc7942_0421 at 411.812 kb on - strand, within Synpcc7942_0421 at 411.812 kb on - strand, within Synpcc7942_0421 at 411.819 kb on + strand, within Synpcc7942_0421 at 411.831 kb on + strand, within Synpcc7942_0421 at 411.831 kb on + strand, within Synpcc7942_0421 at 411.839 kb on - strand, within Synpcc7942_0421 at 411.839 kb on - strand, within Synpcc7942_0421 at 411.846 kb on - strand, within Synpcc7942_0421 at 411.902 kb on - strand, within Synpcc7942_0421 at 411.905 kb on + strand, within Synpcc7942_0421 at 411.946 kb on + strand at 411.953 kb on + strand at 411.953 kb on + strand at 411.982 kb on - strand at 411.990 kb on + strand at 411.998 kb on - strand at 411.998 kb on - strand at 412.009 kb on + strand at 412.009 kb on + strand at 412.015 kb on + strand at 412.023 kb on - strand at 412.046 kb on + strand at 412.052 kb on + strand at 412.065 kb on - strand at 412.065 kb on - strand at 412.065 kb on - strand at 412.065 kb on - strand at 412.065 kb on - strand at 412.091 kb on + strand at 412.099 kb on - strand at 412.123 kb on + strand at 412.133 kb on + strand at 412.133 kb on + strand at 412.166 kb on - strand at 412.185 kb on + strand at 412.188 kb on - strand at 412.193 kb on - strand at 412.193 kb on - strand at 412.193 kb on - strand at 412.196 kb on - strand at 412.207 kb on + strand at 412.207 kb on + strand at 412.207 kb on + strand at 412.215 kb on + strand at 412.215 kb on + strand at 412.215 kb on + strand at 412.223 kb on - strand at 412.239 kb on + strand at 412.239 kb on + strand at 412.247 kb on - strand at 412.294 kb on - strand, within Synpcc7942_0422 at 412.313 kb on - strand, within Synpcc7942_0422 at 412.422 kb on + strand, within Synpcc7942_0422 at 412.489 kb on + strand, within Synpcc7942_0422 at 412.499 kb on + strand, within Synpcc7942_0422 at 412.499 kb on + strand, within Synpcc7942_0422 at 412.507 kb on - strand, within Synpcc7942_0422 at 412.507 kb on - strand, within Synpcc7942_0422 at 412.507 kb on - strand, within Synpcc7942_0422 at 412.514 kb on + strand, within Synpcc7942_0422
Per-strain Table
Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12 remove 408,953 - +0.3 409,897 + -0.0 409,948 + -1.1 409,956 - +0.1 410,051 - -3.4 410,081 + -2.5 410,089 - -2.4 410,089 - -2.7 410,100 + -1.3 410,171 + Synpcc7942_0420 0.14 -1.6 410,257 + Synpcc7942_0420 0.20 -3.7 410,267 + Synpcc7942_0420 0.20 -1.5 410,275 - Synpcc7942_0420 0.21 +0.2 410,281 + Synpcc7942_0420 0.21 -2.8 410,314 - Synpcc7942_0420 0.23 -1.3 410,337 - Synpcc7942_0420 0.25 -1.5 410,337 - Synpcc7942_0420 0.25 -2.9 410,428 + Synpcc7942_0420 0.30 -1.6 410,446 + Synpcc7942_0420 0.32 -2.5 410,452 + Synpcc7942_0420 0.32 -2.9 410,575 + Synpcc7942_0420 0.40 -2.2 410,605 + Synpcc7942_0420 0.42 -0.3 410,605 + Synpcc7942_0420 0.42 -2.2 410,613 - Synpcc7942_0420 0.42 -1.3 410,761 + Synpcc7942_0420 0.52 -2.0 410,761 + Synpcc7942_0420 0.52 -1.6 410,766 + Synpcc7942_0420 0.52 -3.3 410,766 + Synpcc7942_0420 0.52 -0.2 410,774 - Synpcc7942_0420 0.53 -2.1 410,822 - Synpcc7942_0420 0.56 -0.2 410,860 + Synpcc7942_0420 0.58 -0.8 410,860 + Synpcc7942_0420 0.58 -2.3 410,860 + Synpcc7942_0420 0.58 -1.6 410,867 + Synpcc7942_0420 0.58 -0.0 410,867 + Synpcc7942_0420 0.58 -2.3 410,868 - Synpcc7942_0420 0.59 -0.3 410,872 + Synpcc7942_0420 0.59 -3.3 410,872 + Synpcc7942_0420 0.59 -2.0 410,875 - Synpcc7942_0420 0.59 +0.7 410,918 + Synpcc7942_0420 0.62 -3.3 410,929 - Synpcc7942_0420 0.62 -2.2 410,953 - Synpcc7942_0420 0.64 -2.3 411,033 - Synpcc7942_0420 0.69 -2.3 411,063 + Synpcc7942_0420 0.71 -1.6 411,071 - Synpcc7942_0420 0.72 -2.1 411,114 - Synpcc7942_0420 0.74 -1.3 411,243 + Synpcc7942_0420 0.83 -2.2 411,243 + Synpcc7942_0420 0.83 -3.8 411,243 + Synpcc7942_0420 0.83 -1.5 411,251 - Synpcc7942_0420 0.83 -2.2 411,251 - Synpcc7942_0420 0.83 -2.5 411,272 + Synpcc7942_0420 0.84 -1.3 411,297 - Synpcc7942_0420 0.86 -3.4 411,332 + Synpcc7942_0420 0.88 -3.0 411,334 + Synpcc7942_0420 0.88 -1.3 411,350 + Synpcc7942_0420 0.89 -3.6 411,350 + Synpcc7942_0420 0.89 -0.9 411,350 + Synpcc7942_0420 0.89 -2.5 411,363 - -1.1 411,381 + -2.8 411,381 + -2.6 411,390 + -0.6 411,398 - -2.3 411,398 - -1.6 411,433 + -1.3 411,566 - -1.2 411,607 + Synpcc7942_0421 0.15 -0.6 411,614 + Synpcc7942_0421 0.17 -2.2 411,622 - Synpcc7942_0421 0.19 -2.4 411,622 - Synpcc7942_0421 0.19 -0.8 411,676 - Synpcc7942_0421 0.32 -2.5 411,682 - Synpcc7942_0421 0.34 -1.8 411,682 - Synpcc7942_0421 0.34 -2.0 411,682 - Synpcc7942_0421 0.34 -2.4 411,682 - Synpcc7942_0421 0.34 -2.2 411,715 - Synpcc7942_0421 0.42 -2.1 411,742 - Synpcc7942_0421 0.49 -1.2 411,742 - Synpcc7942_0421 0.49 -2.0 411,804 + Synpcc7942_0421 0.64 -0.9 411,804 + Synpcc7942_0421 0.64 -1.0 411,804 + Synpcc7942_0421 0.64 -1.8 411,812 - Synpcc7942_0421 0.66 -0.8 411,812 - Synpcc7942_0421 0.66 -2.5 411,812 - Synpcc7942_0421 0.66 +3.0 411,819 + Synpcc7942_0421 0.68 -1.8 411,831 + Synpcc7942_0421 0.71 -0.6 411,831 + Synpcc7942_0421 0.71 -0.4 411,839 - Synpcc7942_0421 0.73 -1.6 411,839 - Synpcc7942_0421 0.73 -2.0 411,846 - Synpcc7942_0421 0.75 -0.5 411,902 - Synpcc7942_0421 0.89 +0.1 411,905 + Synpcc7942_0421 0.89 -3.7 411,946 + +2.3 411,953 + +0.8 411,953 + -1.0 411,982 - -2.9 411,990 + +4.4 411,998 - +2.0 411,998 - +2.8 412,009 + +0.4 412,009 + -0.0 412,015 + +1.2 412,023 - -1.2 412,046 + -2.6 412,052 + +1.1 412,065 - -0.5 412,065 - +0.5 412,065 - +1.0 412,065 - +0.4 412,065 - -2.0 412,091 + +2.0 412,099 - +1.1 412,123 + +1.6 412,133 + +1.5 412,133 + +1.5 412,166 - +0.1 412,185 + +0.5 412,188 - +0.3 412,193 - -1.6 412,193 - +0.4 412,193 - -0.2 412,196 - -0.1 412,207 + +1.7 412,207 + +1.1 412,207 + +0.2 412,215 + +0.9 412,215 + -0.2 412,215 + +1.1 412,223 - -0.0 412,239 + -0.3 412,239 + -0.6 412,247 - +0.2 412,294 - Synpcc7942_0422 0.13 +1.1 412,313 - Synpcc7942_0422 0.15 +1.2 412,422 + Synpcc7942_0422 0.24 +0.5 412,489 + Synpcc7942_0422 0.30 -1.2 412,499 + Synpcc7942_0422 0.31 +2.0 412,499 + Synpcc7942_0422 0.31 -0.4 412,507 - Synpcc7942_0422 0.31 -0.3 412,507 - Synpcc7942_0422 0.31 +1.2 412,507 - Synpcc7942_0422 0.31 +0.5 412,514 + Synpcc7942_0422 0.32 -0.6
Or see this region's nucleotide sequence