Experiment: Flask growth in 60 uE Light-Dark 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lim17 and Synpcc7942_0398 are separated by 66 nucleotides Synpcc7942_0398 and Synpcc7942_0399 are separated by 344 nucleotides Synpcc7942_0399 and trpG are separated by 33 nucleotides trpG and dgkA are separated by 64 nucleotides
Synpcc7942_0397: lim17 - putative neutral invertase, at 391,532 to 392,923
lim17
Synpcc7942_0398: Synpcc7942_0398 - hypothetical protein, at 392,990 to 393,448
_0398
Synpcc7942_0399: Synpcc7942_0399 - hypothetical protein, at 393,793 to 394,545
_0399
Synpcc7942_0400: trpG - anthranilate synthase, component II, at 394,579 to 395,181
trpG
Synpcc7942_0401: dgkA - diacylglycerol kinase, at 395,246 to 395,731
dgkA
Position (kb) 393
394
395 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 392.797 kb on - strand at 392.833 kb on + strand at 392.833 kb on + strand at 392.862 kb on + strand at 392.880 kb on - strand at 392.881 kb on + strand at 392.881 kb on + strand at 392.881 kb on + strand at 392.881 kb on + strand at 392.881 kb on + strand at 392.881 kb on + strand at 392.881 kb on + strand at 392.883 kb on + strand at 392.889 kb on - strand at 392.889 kb on - strand at 392.934 kb on + strand at 392.961 kb on - strand at 392.961 kb on - strand at 392.963 kb on + strand at 392.971 kb on - strand at 392.971 kb on - strand at 392.981 kb on + strand at 392.999 kb on + strand at 393.060 kb on + strand, within Synpcc7942_0398 at 393.171 kb on + strand, within Synpcc7942_0398 at 393.194 kb on + strand, within Synpcc7942_0398 at 393.194 kb on + strand, within Synpcc7942_0398 at 393.194 kb on + strand, within Synpcc7942_0398 at 393.194 kb on + strand, within Synpcc7942_0398 at 393.194 kb on + strand, within Synpcc7942_0398 at 393.194 kb on + strand, within Synpcc7942_0398 at 393.194 kb on + strand, within Synpcc7942_0398 at 393.196 kb on + strand, within Synpcc7942_0398 at 393.202 kb on - strand, within Synpcc7942_0398 at 393.202 kb on - strand, within Synpcc7942_0398 at 393.202 kb on - strand, within Synpcc7942_0398 at 393.202 kb on - strand, within Synpcc7942_0398 at 393.202 kb on - strand, within Synpcc7942_0398 at 393.202 kb on - strand, within Synpcc7942_0398 at 393.226 kb on - strand, within Synpcc7942_0398 at 393.280 kb on - strand, within Synpcc7942_0398 at 393.308 kb on + strand at 393.308 kb on + strand, within Synpcc7942_0398 at 393.308 kb on + strand, within Synpcc7942_0398 at 393.313 kb on + strand, within Synpcc7942_0398 at 393.313 kb on + strand, within Synpcc7942_0398 at 393.313 kb on + strand, within Synpcc7942_0398 at 393.362 kb on + strand, within Synpcc7942_0398 at 393.362 kb on + strand, within Synpcc7942_0398 at 393.362 kb on + strand, within Synpcc7942_0398 at 393.370 kb on - strand, within Synpcc7942_0398 at 393.370 kb on - strand, within Synpcc7942_0398 at 393.370 kb on - strand, within Synpcc7942_0398 at 393.380 kb on + strand, within Synpcc7942_0398 at 393.386 kb on - strand, within Synpcc7942_0398 at 393.410 kb on + strand at 393.425 kb on - strand at 393.446 kb on - strand at 393.465 kb on + strand at 393.492 kb on - strand at 393.492 kb on - strand at 393.492 kb on - strand at 393.492 kb on - strand at 393.502 kb on - strand at 393.541 kb on - strand at 393.591 kb on + strand at 393.591 kb on + strand at 393.591 kb on + strand at 393.591 kb on + strand at 393.591 kb on + strand at 393.592 kb on + strand at 393.592 kb on + strand at 393.592 kb on + strand at 393.603 kb on + strand at 393.604 kb on + strand at 393.604 kb on + strand at 393.606 kb on - strand at 393.611 kb on - strand at 393.612 kb on - strand at 393.635 kb on - strand at 393.679 kb on - strand at 393.700 kb on + strand at 393.700 kb on + strand at 393.705 kb on - strand at 393.706 kb on - strand at 393.746 kb on + strand at 393.757 kb on + strand at 393.757 kb on + strand at 393.757 kb on + strand at 393.765 kb on - strand at 393.765 kb on - strand at 393.767 kb on + strand at 393.767 kb on + strand at 393.791 kb on + strand at 393.794 kb on - strand at 393.872 kb on + strand, within Synpcc7942_0399 at 393.882 kb on + strand, within Synpcc7942_0399 at 393.908 kb on - strand, within Synpcc7942_0399 at 393.915 kb on + strand, within Synpcc7942_0399 at 393.933 kb on + strand, within Synpcc7942_0399 at 393.957 kb on - strand, within Synpcc7942_0399 at 393.974 kb on + strand, within Synpcc7942_0399 at 394.003 kb on - strand, within Synpcc7942_0399 at 394.005 kb on + strand, within Synpcc7942_0399 at 394.050 kb on - strand, within Synpcc7942_0399 at 394.050 kb on - strand, within Synpcc7942_0399 at 394.050 kb on - strand, within Synpcc7942_0399 at 394.050 kb on - strand, within Synpcc7942_0399 at 394.061 kb on - strand, within Synpcc7942_0399 at 394.061 kb on - strand, within Synpcc7942_0399 at 394.071 kb on - strand, within Synpcc7942_0399 at 394.103 kb on + strand, within Synpcc7942_0399 at 394.205 kb on + strand, within Synpcc7942_0399 at 394.220 kb on + strand, within Synpcc7942_0399 at 394.279 kb on + strand, within Synpcc7942_0399 at 394.307 kb on - strand, within Synpcc7942_0399 at 394.322 kb on - strand, within Synpcc7942_0399 at 394.342 kb on + strand, within Synpcc7942_0399 at 394.367 kb on + strand, within Synpcc7942_0399 at 394.431 kb on - strand, within Synpcc7942_0399 at 394.456 kb on + strand, within Synpcc7942_0399 at 394.457 kb on + strand, within Synpcc7942_0399 at 394.459 kb on - strand, within Synpcc7942_0399 at 394.462 kb on + strand, within Synpcc7942_0399 at 394.477 kb on + strand at 394.570 kb on + strand at 395.240 kb on - strand at 395.263 kb on + strand at 395.276 kb on - strand at 395.293 kb on - strand at 395.293 kb on - strand at 395.298 kb on + strand, within dgkA at 395.324 kb on + strand, within dgkA at 395.332 kb on - strand, within dgkA at 395.332 kb on - strand, within dgkA at 395.332 kb on - strand, within dgkA at 395.332 kb on - strand, within dgkA at 395.416 kb on - strand at 395.416 kb on - strand, within dgkA at 395.416 kb on - strand, within dgkA at 395.418 kb on + strand at 395.418 kb on + strand, within dgkA at 395.418 kb on + strand, within dgkA at 395.423 kb on + strand, within dgkA at 395.426 kb on - strand, within dgkA at 395.452 kb on + strand, within dgkA at 395.459 kb on + strand, within dgkA at 395.459 kb on + strand, within dgkA at 395.459 kb on + strand, within dgkA at 395.466 kb on - strand, within dgkA at 395.467 kb on - strand, within dgkA at 395.467 kb on - strand, within dgkA at 395.467 kb on - strand, within dgkA at 395.467 kb on - strand, within dgkA at 395.476 kb on + strand, within dgkA at 395.481 kb on + strand, within dgkA at 395.488 kb on + strand, within dgkA at 395.491 kb on - strand, within dgkA at 395.496 kb on - strand, within dgkA at 395.496 kb on - strand, within dgkA at 395.496 kb on - strand, within dgkA at 395.527 kb on + strand, within dgkA at 395.535 kb on - strand, within dgkA
Per-strain Table
Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12 remove 392,797 - +0.2 392,833 + -0.6 392,833 + -0.4 392,862 + +0.4 392,880 - -1.1 392,881 + +0.2 392,881 + +0.3 392,881 + +0.5 392,881 + +1.0 392,881 + -0.0 392,881 + +0.2 392,881 + -1.0 392,883 + +0.1 392,889 - -1.7 392,889 - -0.1 392,934 + +0.1 392,961 - +0.1 392,961 - +0.5 392,963 + +1.2 392,971 - -1.6 392,971 - -0.2 392,981 + -0.6 392,999 + +0.3 393,060 + Synpcc7942_0398 0.15 +0.2 393,171 + Synpcc7942_0398 0.39 +0.3 393,194 + Synpcc7942_0398 0.44 +1.0 393,194 + Synpcc7942_0398 0.44 -0.3 393,194 + Synpcc7942_0398 0.44 -1.5 393,194 + Synpcc7942_0398 0.44 -0.0 393,194 + Synpcc7942_0398 0.44 -1.2 393,194 + Synpcc7942_0398 0.44 -0.3 393,194 + Synpcc7942_0398 0.44 -0.3 393,196 + Synpcc7942_0398 0.45 -0.3 393,202 - Synpcc7942_0398 0.46 +1.3 393,202 - Synpcc7942_0398 0.46 +0.1 393,202 - Synpcc7942_0398 0.46 -0.8 393,202 - Synpcc7942_0398 0.46 -1.1 393,202 - Synpcc7942_0398 0.46 -2.8 393,202 - Synpcc7942_0398 0.46 -0.8 393,226 - Synpcc7942_0398 0.51 -0.3 393,280 - Synpcc7942_0398 0.63 -1.2 393,308 + -1.2 393,308 + Synpcc7942_0398 0.69 -0.3 393,308 + Synpcc7942_0398 0.69 -0.8 393,313 + Synpcc7942_0398 0.70 -1.2 393,313 + Synpcc7942_0398 0.70 -1.2 393,313 + Synpcc7942_0398 0.70 -1.8 393,362 + Synpcc7942_0398 0.81 -0.6 393,362 + Synpcc7942_0398 0.81 -1.0 393,362 + Synpcc7942_0398 0.81 -0.8 393,370 - Synpcc7942_0398 0.83 +0.2 393,370 - Synpcc7942_0398 0.83 +0.0 393,370 - Synpcc7942_0398 0.83 +0.2 393,380 + Synpcc7942_0398 0.85 -0.5 393,386 - Synpcc7942_0398 0.86 -1.5 393,410 + +1.0 393,425 - -0.0 393,446 - +0.4 393,465 + -1.4 393,492 - +0.4 393,492 - +1.1 393,492 - -2.8 393,492 - -0.8 393,502 - -1.0 393,541 - +0.7 393,591 + +0.6 393,591 + -0.3 393,591 + -1.7 393,591 + +0.4 393,591 + -0.0 393,592 + -0.4 393,592 + +1.4 393,592 + -0.5 393,603 + -0.8 393,604 + +0.7 393,604 + -0.3 393,606 - +0.3 393,611 - -2.6 393,612 - -3.3 393,635 - +1.3 393,679 - +0.6 393,700 + -0.8 393,700 + +0.6 393,705 - +0.8 393,706 - -1.0 393,746 + -0.2 393,757 + +1.6 393,757 + +0.3 393,757 + +0.0 393,765 - +0.3 393,765 - +1.1 393,767 + +0.3 393,767 + -0.1 393,791 + -0.0 393,794 - +0.7 393,872 + Synpcc7942_0399 0.10 -1.3 393,882 + Synpcc7942_0399 0.12 -1.0 393,908 - Synpcc7942_0399 0.15 +0.2 393,915 + Synpcc7942_0399 0.16 -2.2 393,933 + Synpcc7942_0399 0.19 -1.5 393,957 - Synpcc7942_0399 0.22 -2.7 393,974 + Synpcc7942_0399 0.24 +0.2 394,003 - Synpcc7942_0399 0.28 -0.3 394,005 + Synpcc7942_0399 0.28 +0.1 394,050 - Synpcc7942_0399 0.34 +0.1 394,050 - Synpcc7942_0399 0.34 -0.4 394,050 - Synpcc7942_0399 0.34 -2.9 394,050 - Synpcc7942_0399 0.34 -2.6 394,061 - Synpcc7942_0399 0.36 -1.7 394,061 - Synpcc7942_0399 0.36 -0.8 394,071 - Synpcc7942_0399 0.37 -2.1 394,103 + Synpcc7942_0399 0.41 -0.7 394,205 + Synpcc7942_0399 0.55 -2.9 394,220 + Synpcc7942_0399 0.57 -0.6 394,279 + Synpcc7942_0399 0.65 -0.1 394,307 - Synpcc7942_0399 0.68 -0.7 394,322 - Synpcc7942_0399 0.70 +0.2 394,342 + Synpcc7942_0399 0.73 -0.7 394,367 + Synpcc7942_0399 0.76 +0.2 394,431 - Synpcc7942_0399 0.85 -0.3 394,456 + Synpcc7942_0399 0.88 -1.2 394,457 + Synpcc7942_0399 0.88 -0.2 394,459 - Synpcc7942_0399 0.88 -1.0 394,462 + Synpcc7942_0399 0.89 -2.7 394,477 + -0.2 394,570 + -0.6 395,240 - -0.1 395,263 + +3.1 395,276 - +1.7 395,293 - +1.3 395,293 - +1.2 395,298 + dgkA Synpcc7942_0401 0.11 +2.0 395,324 + dgkA Synpcc7942_0401 0.16 +2.1 395,332 - dgkA Synpcc7942_0401 0.18 +0.3 395,332 - dgkA Synpcc7942_0401 0.18 +0.6 395,332 - dgkA Synpcc7942_0401 0.18 -1.3 395,332 - dgkA Synpcc7942_0401 0.18 -0.3 395,416 - +0.9 395,416 - dgkA Synpcc7942_0401 0.35 +1.3 395,416 - dgkA Synpcc7942_0401 0.35 +1.2 395,418 + +1.3 395,418 + dgkA Synpcc7942_0401 0.35 +1.7 395,418 + dgkA Synpcc7942_0401 0.35 +1.9 395,423 + dgkA Synpcc7942_0401 0.36 +1.0 395,426 - dgkA Synpcc7942_0401 0.37 +1.8 395,452 + dgkA Synpcc7942_0401 0.42 +2.3 395,459 + dgkA Synpcc7942_0401 0.44 +1.6 395,459 + dgkA Synpcc7942_0401 0.44 +0.9 395,459 + dgkA Synpcc7942_0401 0.44 +1.7 395,466 - dgkA Synpcc7942_0401 0.45 +1.3 395,467 - dgkA Synpcc7942_0401 0.45 +1.0 395,467 - dgkA Synpcc7942_0401 0.45 +2.0 395,467 - dgkA Synpcc7942_0401 0.45 +1.7 395,467 - dgkA Synpcc7942_0401 0.45 +0.5 395,476 + dgkA Synpcc7942_0401 0.47 +0.7 395,481 + dgkA Synpcc7942_0401 0.48 +0.2 395,488 + dgkA Synpcc7942_0401 0.50 +1.2 395,491 - dgkA Synpcc7942_0401 0.50 +1.9 395,496 - dgkA Synpcc7942_0401 0.51 +0.8 395,496 - dgkA Synpcc7942_0401 0.51 +1.7 395,496 - dgkA Synpcc7942_0401 0.51 +1.5 395,527 + dgkA Synpcc7942_0401 0.58 +1.2 395,535 - dgkA Synpcc7942_0401 0.59 +1.7
Or see this region's nucleotide sequence