Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0381

Experiment: Flask growth in 60 uE Light-Dark 12:12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0380 and Synpcc7942_0381 are separated by 203 nucleotidesSynpcc7942_0381 and Synpcc7942_0382 are separated by 109 nucleotidesSynpcc7942_0382 and Synpcc7942_0383 are separated by 39 nucleotides Synpcc7942_0380: Synpcc7942_0380 - hypothetical protein, at 373,785 to 374,828 _0380 Synpcc7942_0381: Synpcc7942_0381 - hypothetical protein, at 375,032 to 375,346 _0381 Synpcc7942_0382: Synpcc7942_0382 - hypothetical protein, at 375,456 to 375,722 _0382 Synpcc7942_0383: Synpcc7942_0383 - hypothetical protein, at 375,762 to 376,448 _0383 Position (kb) 375 376Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 374.812 kb on + strandat 374.832 kb on + strandat 374.850 kb on - strandat 374.924 kb on + strandat 374.928 kb on + strandat 374.969 kb on - strandat 374.970 kb on + strandat 374.978 kb on + strandat 374.990 kb on + strandat 375.025 kb on + strandat 375.030 kb on + strandat 375.030 kb on + strandat 375.056 kb on - strandat 375.083 kb on + strand, within Synpcc7942_0381at 375.091 kb on - strand, within Synpcc7942_0381at 375.109 kb on + strand, within Synpcc7942_0381at 375.115 kb on + strand, within Synpcc7942_0381at 375.117 kb on - strand, within Synpcc7942_0381at 375.123 kb on - strand, within Synpcc7942_0381at 375.137 kb on + strand, within Synpcc7942_0381at 375.203 kb on - strand, within Synpcc7942_0381at 375.222 kb on + strand, within Synpcc7942_0381at 375.247 kb on + strand, within Synpcc7942_0381at 375.251 kb on + strand, within Synpcc7942_0381at 375.259 kb on - strand, within Synpcc7942_0381at 375.262 kb on + strand, within Synpcc7942_0381at 375.270 kb on - strand, within Synpcc7942_0381at 375.309 kb on - strand, within Synpcc7942_0381at 375.309 kb on - strand, within Synpcc7942_0381at 375.318 kb on + strandat 375.318 kb on + strandat 375.318 kb on + strandat 375.318 kb on + strandat 375.326 kb on - strandat 375.326 kb on - strandat 375.352 kb on - strandat 375.354 kb on + strandat 375.378 kb on + strandat 375.383 kb on + strandat 375.386 kb on - strandat 375.386 kb on - strandat 375.388 kb on - strandat 375.393 kb on + strandat 375.393 kb on + strandat 375.393 kb on + strandat 375.393 kb on + strandat 375.393 kb on + strandat 375.393 kb on + strandat 375.393 kb on + strandat 375.393 kb on + strandat 375.393 kb on + strandat 375.401 kb on - strandat 375.401 kb on - strandat 375.401 kb on - strandat 375.401 kb on - strandat 375.401 kb on - strandat 375.401 kb on - strandat 375.401 kb on - strandat 375.529 kb on + strand, within Synpcc7942_0382at 375.557 kb on - strand, within Synpcc7942_0382at 375.584 kb on - strand, within Synpcc7942_0382at 375.770 kb on + strandat 375.770 kb on + strandat 375.880 kb on + strand, within Synpcc7942_0383at 375.899 kb on - strand, within Synpcc7942_0383at 375.954 kb on + strand, within Synpcc7942_0383at 375.962 kb on - strand, within Synpcc7942_0383at 375.971 kb on + strand, within Synpcc7942_0383at 375.979 kb on - strand, within Synpcc7942_0383at 376.064 kb on + strand, within Synpcc7942_0383at 376.064 kb on + strand, within Synpcc7942_0383at 376.064 kb on + strand, within Synpcc7942_0383at 376.072 kb on - strand, within Synpcc7942_0383at 376.085 kb on - strand, within Synpcc7942_0383at 376.244 kb on + strand, within Synpcc7942_0383at 376.254 kb on - strand, within Synpcc7942_0383at 376.337 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12
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374,812 + -0.5
374,832 + -0.7
374,850 - -0.7
374,924 + -0.4
374,928 + +0.6
374,969 - +0.2
374,970 + +0.3
374,978 + +0.4
374,990 + -0.4
375,025 + -0.4
375,030 + -0.9
375,030 + -0.3
375,056 - -1.2
375,083 + Synpcc7942_0381 0.16 -0.1
375,091 - Synpcc7942_0381 0.19 +0.0
375,109 + Synpcc7942_0381 0.24 -4.6
375,115 + Synpcc7942_0381 0.26 -1.2
375,117 - Synpcc7942_0381 0.27 -3.4
375,123 - Synpcc7942_0381 0.29 -1.6
375,137 + Synpcc7942_0381 0.33 -0.9
375,203 - Synpcc7942_0381 0.54 -3.1
375,222 + Synpcc7942_0381 0.60 -1.9
375,247 + Synpcc7942_0381 0.68 -1.2
375,251 + Synpcc7942_0381 0.70 -0.3
375,259 - Synpcc7942_0381 0.72 -1.3
375,262 + Synpcc7942_0381 0.73 -1.1
375,270 - Synpcc7942_0381 0.76 -0.0
375,309 - Synpcc7942_0381 0.88 -1.1
375,309 - Synpcc7942_0381 0.88 +0.1
375,318 + -0.7
375,318 + -0.6
375,318 + +0.3
375,318 + -0.5
375,326 - +0.4
375,326 - -1.3
375,352 - -0.9
375,354 + -0.6
375,378 + -1.0
375,383 + -1.8
375,386 - +0.2
375,386 - +0.2
375,388 - -1.1
375,393 + -1.9
375,393 + -0.4
375,393 + +0.7
375,393 + -0.7
375,393 + -2.3
375,393 + -0.3
375,393 + -1.3
375,393 + +0.4
375,393 + -1.3
375,401 - -0.9
375,401 - -1.0
375,401 - -0.2
375,401 - -0.9
375,401 - -2.1
375,401 - -1.0
375,401 - -1.3
375,529 + Synpcc7942_0382 0.27 -0.6
375,557 - Synpcc7942_0382 0.38 +0.8
375,584 - Synpcc7942_0382 0.48 -0.0
375,770 + +0.3
375,770 + +0.1
375,880 + Synpcc7942_0383 0.17 +0.5
375,899 - Synpcc7942_0383 0.20 +0.1
375,954 + Synpcc7942_0383 0.28 +0.2
375,962 - Synpcc7942_0383 0.29 -0.0
375,971 + Synpcc7942_0383 0.30 +1.7
375,979 - Synpcc7942_0383 0.32 +0.6
376,064 + Synpcc7942_0383 0.44 -0.7
376,064 + Synpcc7942_0383 0.44 +0.3
376,064 + Synpcc7942_0383 0.44 +0.1
376,072 - Synpcc7942_0383 0.45 +1.0
376,085 - Synpcc7942_0383 0.47 -1.3
376,244 + Synpcc7942_0383 0.70 -0.5
376,254 - Synpcc7942_0383 0.72 -0.3
376,337 + +1.0

Or see this region's nucleotide sequence