Experiment: Flask growth in 60 uE Light-Dark 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0380 and Synpcc7942_0381 are separated by 203 nucleotides Synpcc7942_0381 and Synpcc7942_0382 are separated by 109 nucleotides Synpcc7942_0382 and Synpcc7942_0383 are separated by 39 nucleotides
Synpcc7942_0380: Synpcc7942_0380 - hypothetical protein, at 373,785 to 374,828
_0380
Synpcc7942_0381: Synpcc7942_0381 - hypothetical protein, at 375,032 to 375,346
_0381
Synpcc7942_0382: Synpcc7942_0382 - hypothetical protein, at 375,456 to 375,722
_0382
Synpcc7942_0383: Synpcc7942_0383 - hypothetical protein, at 375,762 to 376,448
_0383
Position (kb) 375
376 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 374.812 kb on + strand at 374.832 kb on + strand at 374.850 kb on - strand at 374.924 kb on + strand at 374.928 kb on + strand at 374.969 kb on - strand at 374.970 kb on + strand at 374.978 kb on + strand at 374.990 kb on + strand at 375.025 kb on + strand at 375.030 kb on + strand at 375.030 kb on + strand at 375.056 kb on - strand at 375.083 kb on + strand, within Synpcc7942_0381 at 375.091 kb on - strand, within Synpcc7942_0381 at 375.109 kb on + strand, within Synpcc7942_0381 at 375.115 kb on + strand, within Synpcc7942_0381 at 375.117 kb on - strand, within Synpcc7942_0381 at 375.123 kb on - strand, within Synpcc7942_0381 at 375.137 kb on + strand, within Synpcc7942_0381 at 375.203 kb on - strand, within Synpcc7942_0381 at 375.222 kb on + strand, within Synpcc7942_0381 at 375.247 kb on + strand, within Synpcc7942_0381 at 375.251 kb on + strand, within Synpcc7942_0381 at 375.259 kb on - strand, within Synpcc7942_0381 at 375.262 kb on + strand, within Synpcc7942_0381 at 375.270 kb on - strand, within Synpcc7942_0381 at 375.309 kb on - strand, within Synpcc7942_0381 at 375.309 kb on - strand, within Synpcc7942_0381 at 375.318 kb on + strand at 375.318 kb on + strand at 375.318 kb on + strand at 375.318 kb on + strand at 375.326 kb on - strand at 375.326 kb on - strand at 375.352 kb on - strand at 375.354 kb on + strand at 375.378 kb on + strand at 375.383 kb on + strand at 375.386 kb on - strand at 375.386 kb on - strand at 375.388 kb on - strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.529 kb on + strand, within Synpcc7942_0382 at 375.557 kb on - strand, within Synpcc7942_0382 at 375.584 kb on - strand, within Synpcc7942_0382 at 375.770 kb on + strand at 375.770 kb on + strand at 375.880 kb on + strand, within Synpcc7942_0383 at 375.899 kb on - strand, within Synpcc7942_0383 at 375.954 kb on + strand, within Synpcc7942_0383 at 375.962 kb on - strand, within Synpcc7942_0383 at 375.971 kb on + strand, within Synpcc7942_0383 at 375.979 kb on - strand, within Synpcc7942_0383 at 376.064 kb on + strand, within Synpcc7942_0383 at 376.064 kb on + strand, within Synpcc7942_0383 at 376.064 kb on + strand, within Synpcc7942_0383 at 376.072 kb on - strand, within Synpcc7942_0383 at 376.085 kb on - strand, within Synpcc7942_0383 at 376.244 kb on + strand, within Synpcc7942_0383 at 376.254 kb on - strand, within Synpcc7942_0383 at 376.337 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12 remove 374,812 + -0.5 374,832 + -0.7 374,850 - -0.7 374,924 + -0.4 374,928 + +0.6 374,969 - +0.2 374,970 + +0.3 374,978 + +0.4 374,990 + -0.4 375,025 + -0.4 375,030 + -0.9 375,030 + -0.3 375,056 - -1.2 375,083 + Synpcc7942_0381 0.16 -0.1 375,091 - Synpcc7942_0381 0.19 +0.0 375,109 + Synpcc7942_0381 0.24 -4.6 375,115 + Synpcc7942_0381 0.26 -1.2 375,117 - Synpcc7942_0381 0.27 -3.4 375,123 - Synpcc7942_0381 0.29 -1.6 375,137 + Synpcc7942_0381 0.33 -0.9 375,203 - Synpcc7942_0381 0.54 -3.1 375,222 + Synpcc7942_0381 0.60 -1.9 375,247 + Synpcc7942_0381 0.68 -1.2 375,251 + Synpcc7942_0381 0.70 -0.3 375,259 - Synpcc7942_0381 0.72 -1.3 375,262 + Synpcc7942_0381 0.73 -1.1 375,270 - Synpcc7942_0381 0.76 -0.0 375,309 - Synpcc7942_0381 0.88 -1.1 375,309 - Synpcc7942_0381 0.88 +0.1 375,318 + -0.7 375,318 + -0.6 375,318 + +0.3 375,318 + -0.5 375,326 - +0.4 375,326 - -1.3 375,352 - -0.9 375,354 + -0.6 375,378 + -1.0 375,383 + -1.8 375,386 - +0.2 375,386 - +0.2 375,388 - -1.1 375,393 + -1.9 375,393 + -0.4 375,393 + +0.7 375,393 + -0.7 375,393 + -2.3 375,393 + -0.3 375,393 + -1.3 375,393 + +0.4 375,393 + -1.3 375,401 - -0.9 375,401 - -1.0 375,401 - -0.2 375,401 - -0.9 375,401 - -2.1 375,401 - -1.0 375,401 - -1.3 375,529 + Synpcc7942_0382 0.27 -0.6 375,557 - Synpcc7942_0382 0.38 +0.8 375,584 - Synpcc7942_0382 0.48 -0.0 375,770 + +0.3 375,770 + +0.1 375,880 + Synpcc7942_0383 0.17 +0.5 375,899 - Synpcc7942_0383 0.20 +0.1 375,954 + Synpcc7942_0383 0.28 +0.2 375,962 - Synpcc7942_0383 0.29 -0.0 375,971 + Synpcc7942_0383 0.30 +1.7 375,979 - Synpcc7942_0383 0.32 +0.6 376,064 + Synpcc7942_0383 0.44 -0.7 376,064 + Synpcc7942_0383 0.44 +0.3 376,064 + Synpcc7942_0383 0.44 +0.1 376,072 - Synpcc7942_0383 0.45 +1.0 376,085 - Synpcc7942_0383 0.47 -1.3 376,244 + Synpcc7942_0383 0.70 -0.5 376,254 - Synpcc7942_0383 0.72 -0.3 376,337 + +1.0
Or see this region's nucleotide sequence