Experiment: Flask growth in 60 uE Light-Dark 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0353 and bgl are separated by 399 nucleotides bgl and rbfA overlap by 4 nucleotides rbfA and ycf33 are separated by 51 nucleotides
Synpcc7942_0353: Synpcc7942_0353 - Na+-dependent transporter-like, at 345,470 to 346,432
_0353
Synpcc7942_0354: bgl - Beta-glucosidase-related glycosidase-like, at 346,832 to 348,460
bgl
Synpcc7942_0355: rbfA - ribosome-binding factor A, at 348,457 to 348,870
rbfA
Synpcc7942_0356: ycf33 - conserved hypothetical protein YCF33, at 348,922 to 349,146
ycf33
Position (kb) 346
347
348
349 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 345.836 kb on - strand, within Synpcc7942_0353 at 345.836 kb on - strand, within Synpcc7942_0353 at 345.870 kb on + strand, within Synpcc7942_0353 at 345.909 kb on - strand at 345.933 kb on - strand, within Synpcc7942_0353 at 345.946 kb on - strand, within Synpcc7942_0353 at 345.947 kb on + strand, within Synpcc7942_0353 at 345.947 kb on + strand, within Synpcc7942_0353 at 345.962 kb on - strand, within Synpcc7942_0353 at 345.967 kb on + strand, within Synpcc7942_0353 at 345.976 kb on - strand, within Synpcc7942_0353 at 345.987 kb on + strand, within Synpcc7942_0353 at 345.992 kb on + strand, within Synpcc7942_0353 at 345.992 kb on + strand, within Synpcc7942_0353 at 345.995 kb on - strand, within Synpcc7942_0353 at 346.000 kb on + strand, within Synpcc7942_0353 at 346.000 kb on - strand, within Synpcc7942_0353 at 346.000 kb on - strand, within Synpcc7942_0353 at 346.000 kb on - strand, within Synpcc7942_0353 at 346.000 kb on - strand, within Synpcc7942_0353 at 346.002 kb on + strand, within Synpcc7942_0353 at 346.002 kb on + strand, within Synpcc7942_0353 at 346.008 kb on - strand, within Synpcc7942_0353 at 346.010 kb on - strand, within Synpcc7942_0353 at 346.026 kb on + strand, within Synpcc7942_0353 at 346.043 kb on + strand, within Synpcc7942_0353 at 346.062 kb on + strand, within Synpcc7942_0353 at 346.072 kb on + strand, within Synpcc7942_0353 at 346.106 kb on - strand, within Synpcc7942_0353 at 346.106 kb on - strand, within Synpcc7942_0353 at 346.199 kb on + strand, within Synpcc7942_0353 at 346.275 kb on - strand, within Synpcc7942_0353 at 346.294 kb on + strand, within Synpcc7942_0353 at 346.390 kb on - strand at 346.489 kb on + strand at 346.627 kb on - strand at 346.627 kb on - strand at 346.639 kb on - strand at 346.809 kb on + strand at 346.824 kb on - strand at 346.901 kb on + strand at 346.909 kb on - strand at 346.909 kb on - strand at 346.974 kb on + strand at 347.007 kb on + strand, within bgl at 347.019 kb on - strand, within bgl at 347.123 kb on + strand, within bgl at 347.123 kb on + strand, within bgl at 347.227 kb on - strand, within bgl at 347.268 kb on + strand, within bgl at 347.275 kb on - strand, within bgl at 347.276 kb on - strand, within bgl at 347.276 kb on - strand, within bgl at 347.279 kb on + strand, within bgl at 347.347 kb on + strand, within bgl at 347.521 kb on + strand, within bgl at 347.567 kb on + strand, within bgl at 347.567 kb on + strand, within bgl at 347.567 kb on + strand, within bgl at 347.644 kb on + strand, within bgl at 347.651 kb on + strand, within bgl at 347.655 kb on + strand, within bgl at 347.673 kb on - strand, within bgl at 347.801 kb on + strand, within bgl at 347.878 kb on - strand, within bgl at 347.909 kb on - strand, within bgl at 347.927 kb on - strand, within bgl at 347.985 kb on - strand, within bgl at 348.018 kb on + strand, within bgl at 348.035 kb on + strand, within bgl at 348.035 kb on + strand, within bgl at 348.090 kb on + strand, within bgl at 348.099 kb on - strand, within bgl at 348.102 kb on - strand, within bgl at 348.112 kb on - strand, within bgl at 348.120 kb on - strand, within bgl at 348.123 kb on + strand, within bgl at 348.131 kb on - strand, within bgl at 348.141 kb on - strand, within bgl at 348.149 kb on + strand, within bgl at 348.157 kb on - strand, within bgl at 348.165 kb on + strand, within bgl at 348.178 kb on - strand, within bgl at 348.178 kb on - strand at 348.183 kb on - strand, within bgl at 348.201 kb on + strand at 348.245 kb on + strand, within bgl at 348.273 kb on - strand, within bgl at 348.344 kb on - strand at 348.344 kb on - strand at 348.349 kb on - strand at 348.381 kb on + strand at 348.393 kb on + strand at 348.403 kb on + strand at 348.415 kb on + strand at 348.415 kb on + strand at 348.422 kb on + strand at 348.423 kb on - strand at 348.423 kb on - strand at 348.423 kb on - strand at 348.427 kb on + strand at 348.435 kb on - strand at 348.468 kb on - strand at 348.473 kb on - strand at 348.475 kb on + strand at 348.475 kb on + strand at 348.475 kb on + strand at 348.489 kb on + strand at 348.496 kb on - strand at 348.573 kb on - strand, within rbfA at 348.625 kb on + strand, within rbfA at 348.633 kb on - strand, within rbfA at 348.656 kb on + strand, within rbfA at 348.693 kb on - strand, within rbfA at 348.744 kb on - strand, within rbfA at 348.758 kb on + strand, within rbfA at 348.761 kb on - strand, within rbfA at 348.763 kb on + strand, within rbfA at 348.768 kb on + strand, within rbfA at 348.771 kb on - strand, within rbfA at 348.797 kb on - strand, within rbfA at 348.824 kb on + strand, within rbfA at 348.845 kb on + strand at 348.867 kb on + strand at 348.892 kb on + strand at 348.907 kb on - strand at 348.910 kb on - strand at 348.914 kb on + strand at 348.917 kb on - strand at 348.935 kb on - strand at 348.953 kb on - strand, within ycf33 at 348.965 kb on - strand at 348.965 kb on - strand, within ycf33 at 349.164 kb on + strand at 349.206 kb on + strand at 349.206 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.252 kb on + strand at 349.279 kb on + strand at 349.279 kb on + strand at 349.287 kb on - strand at 349.301 kb on + strand at 349.344 kb on - strand at 349.344 kb on - strand at 349.369 kb on + strand at 349.369 kb on + strand at 349.369 kb on + strand at 349.371 kb on - strand at 349.377 kb on - strand at 349.384 kb on + strand at 349.453 kb on - strand at 349.460 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12 remove 345,836 - Synpcc7942_0353 0.38 +0.4 345,836 - Synpcc7942_0353 0.38 +1.8 345,870 + Synpcc7942_0353 0.42 -0.2 345,909 - -0.3 345,933 - Synpcc7942_0353 0.48 -0.6 345,946 - Synpcc7942_0353 0.49 +0.7 345,947 + Synpcc7942_0353 0.50 +0.1 345,947 + Synpcc7942_0353 0.50 -0.7 345,962 - Synpcc7942_0353 0.51 -0.3 345,967 + Synpcc7942_0353 0.52 +0.6 345,976 - Synpcc7942_0353 0.53 -0.2 345,987 + Synpcc7942_0353 0.54 +0.3 345,992 + Synpcc7942_0353 0.54 +0.3 345,992 + Synpcc7942_0353 0.54 +1.0 345,995 - Synpcc7942_0353 0.55 -1.1 346,000 + Synpcc7942_0353 0.55 +0.4 346,000 - Synpcc7942_0353 0.55 -0.5 346,000 - Synpcc7942_0353 0.55 +0.6 346,000 - Synpcc7942_0353 0.55 +1.3 346,000 - Synpcc7942_0353 0.55 -2.0 346,002 + Synpcc7942_0353 0.55 -0.7 346,002 + Synpcc7942_0353 0.55 -0.9 346,008 - Synpcc7942_0353 0.56 -0.4 346,010 - Synpcc7942_0353 0.56 -0.3 346,026 + Synpcc7942_0353 0.58 +0.9 346,043 + Synpcc7942_0353 0.60 +0.7 346,062 + Synpcc7942_0353 0.61 -0.1 346,072 + Synpcc7942_0353 0.63 -0.2 346,106 - Synpcc7942_0353 0.66 +0.3 346,106 - Synpcc7942_0353 0.66 -0.1 346,199 + Synpcc7942_0353 0.76 -0.0 346,275 - Synpcc7942_0353 0.84 +0.3 346,294 + Synpcc7942_0353 0.86 -1.6 346,390 - -1.7 346,489 + +1.6 346,627 - -0.1 346,627 - -0.8 346,639 - +0.1 346,809 + -0.3 346,824 - +0.4 346,901 + +1.2 346,909 - +1.4 346,909 - +1.3 346,974 + +2.9 347,007 + bgl Synpcc7942_0354 0.11 +1.3 347,019 - bgl Synpcc7942_0354 0.11 +2.1 347,123 + bgl Synpcc7942_0354 0.18 +0.6 347,123 + bgl Synpcc7942_0354 0.18 +1.0 347,227 - bgl Synpcc7942_0354 0.24 +1.8 347,268 + bgl Synpcc7942_0354 0.27 +2.2 347,275 - bgl Synpcc7942_0354 0.27 +1.6 347,276 - bgl Synpcc7942_0354 0.27 +1.7 347,276 - bgl Synpcc7942_0354 0.27 +1.1 347,279 + bgl Synpcc7942_0354 0.27 +1.3 347,347 + bgl Synpcc7942_0354 0.32 +2.2 347,521 + bgl Synpcc7942_0354 0.42 +1.7 347,567 + bgl Synpcc7942_0354 0.45 +0.9 347,567 + bgl Synpcc7942_0354 0.45 +1.2 347,567 + bgl Synpcc7942_0354 0.45 -0.6 347,644 + bgl Synpcc7942_0354 0.50 +1.1 347,651 + bgl Synpcc7942_0354 0.50 +1.7 347,655 + bgl Synpcc7942_0354 0.51 +1.2 347,673 - bgl Synpcc7942_0354 0.52 +1.3 347,801 + bgl Synpcc7942_0354 0.59 +1.0 347,878 - bgl Synpcc7942_0354 0.64 +1.2 347,909 - bgl Synpcc7942_0354 0.66 +0.6 347,927 - bgl Synpcc7942_0354 0.67 -2.0 347,985 - bgl Synpcc7942_0354 0.71 +1.1 348,018 + bgl Synpcc7942_0354 0.73 +1.0 348,035 + bgl Synpcc7942_0354 0.74 +1.6 348,035 + bgl Synpcc7942_0354 0.74 +1.7 348,090 + bgl Synpcc7942_0354 0.77 +1.7 348,099 - bgl Synpcc7942_0354 0.78 +1.6 348,102 - bgl Synpcc7942_0354 0.78 +0.8 348,112 - bgl Synpcc7942_0354 0.79 +1.6 348,120 - bgl Synpcc7942_0354 0.79 +1.1 348,123 + bgl Synpcc7942_0354 0.79 +1.3 348,131 - bgl Synpcc7942_0354 0.80 +1.5 348,141 - bgl Synpcc7942_0354 0.80 +1.5 348,149 + bgl Synpcc7942_0354 0.81 +2.8 348,157 - bgl Synpcc7942_0354 0.81 +1.2 348,165 + bgl Synpcc7942_0354 0.82 +0.9 348,178 - bgl Synpcc7942_0354 0.83 +0.8 348,178 - -0.2 348,183 - bgl Synpcc7942_0354 0.83 +0.9 348,201 + +1.0 348,245 + bgl Synpcc7942_0354 0.87 -1.3 348,273 - bgl Synpcc7942_0354 0.88 +1.3 348,344 - +1.2 348,344 - +0.7 348,349 - -0.0 348,381 + +1.0 348,393 + +1.2 348,403 + +0.7 348,415 + +1.2 348,415 + +1.7 348,422 + +0.8 348,423 - -0.5 348,423 - +1.0 348,423 - +0.1 348,427 + +0.8 348,435 - +1.9 348,468 - -1.3 348,473 - -0.1 348,475 + -2.1 348,475 + -2.3 348,475 + -0.7 348,489 + -0.4 348,496 - -1.1 348,573 - rbfA Synpcc7942_0355 0.28 -0.8 348,625 + rbfA Synpcc7942_0355 0.41 -2.8 348,633 - rbfA Synpcc7942_0355 0.43 -2.5 348,656 + rbfA Synpcc7942_0355 0.48 -2.6 348,693 - rbfA Synpcc7942_0355 0.57 +0.1 348,744 - rbfA Synpcc7942_0355 0.69 -2.2 348,758 + rbfA Synpcc7942_0355 0.73 -0.9 348,761 - rbfA Synpcc7942_0355 0.73 -1.3 348,763 + rbfA Synpcc7942_0355 0.74 -1.8 348,768 + rbfA Synpcc7942_0355 0.75 -3.0 348,771 - rbfA Synpcc7942_0355 0.76 -3.5 348,797 - rbfA Synpcc7942_0355 0.82 -2.0 348,824 + rbfA Synpcc7942_0355 0.89 -2.0 348,845 + -0.4 348,867 + +1.4 348,892 + -0.8 348,907 - -0.5 348,910 - +0.3 348,914 + -0.6 348,917 - -1.3 348,935 - -0.1 348,953 - ycf33 Synpcc7942_0356 0.14 +1.1 348,965 - +0.1 348,965 - ycf33 Synpcc7942_0356 0.19 -0.5 349,164 + +0.7 349,206 + +1.1 349,206 + +0.9 349,220 + +0.8 349,220 + -0.5 349,220 + +0.3 349,220 + -0.2 349,220 + +1.5 349,220 + +0.2 349,220 + +0.4 349,220 + -0.2 349,228 - -1.1 349,228 - +0.3 349,228 - -0.1 349,228 - +2.1 349,228 - +0.1 349,228 - +1.0 349,228 - -0.3 349,228 - -0.0 349,228 - -0.2 349,228 - +0.2 349,228 - -0.0 349,252 + +1.0 349,279 + -1.7 349,279 + +0.0 349,287 - +0.2 349,301 + +0.3 349,344 - +0.4 349,344 - +0.3 349,369 + +1.2 349,369 + +0.7 349,369 + +0.4 349,371 - -1.0 349,377 - -0.6 349,384 + +0.8 349,453 - +0.1 349,460 - +0.6
Or see this region's nucleotide sequence