Experiment: Flask growth in 60 uE Light-Dark 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uppS and Synpcc7942_0265 are separated by 12 nucleotides Synpcc7942_0265 and dnaJ4 overlap by 23 nucleotides dnaJ4 and gidB are separated by 561 nucleotides
Synpcc7942_0264: uppS - Undecaprenyl pyrophosphate synthetase, at 261,617 to 262,372
uppS
Synpcc7942_0265: Synpcc7942_0265 - hypothetical protein, at 262,385 to 262,660
_0265
Synpcc7942_0266: dnaJ4 - Heat shock protein DnaJ-like, at 262,638 to 263,195
dnaJ4
Synpcc7942_0267: gidB - glucose-inhibited division protein B, at 263,757 to 264,485
gidB
Position (kb) 262
263
264 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 262.367 kb on + strand at 262.381 kb on - strand at 262.383 kb on + strand at 262.386 kb on - strand at 262.397 kb on - strand at 262.417 kb on + strand, within Synpcc7942_0265 at 262.422 kb on + strand, within Synpcc7942_0265 at 262.422 kb on - strand, within Synpcc7942_0265 at 262.453 kb on + strand, within Synpcc7942_0265 at 262.454 kb on + strand, within Synpcc7942_0265 at 262.462 kb on - strand, within Synpcc7942_0265 at 262.479 kb on + strand, within Synpcc7942_0265 at 262.503 kb on + strand, within Synpcc7942_0265 at 262.503 kb on + strand, within Synpcc7942_0265 at 262.514 kb on + strand, within Synpcc7942_0265 at 262.535 kb on + strand, within Synpcc7942_0265 at 262.545 kb on + strand, within Synpcc7942_0265 at 262.553 kb on + strand, within Synpcc7942_0265 at 262.561 kb on - strand, within Synpcc7942_0265 at 262.641 kb on - strand at 262.643 kb on - strand at 262.656 kb on + strand at 262.711 kb on - strand, within dnaJ4 at 262.718 kb on - strand, within dnaJ4 at 262.733 kb on - strand, within dnaJ4 at 262.754 kb on + strand, within dnaJ4 at 262.789 kb on + strand, within dnaJ4 at 262.797 kb on - strand at 262.797 kb on - strand, within dnaJ4 at 262.799 kb on + strand, within dnaJ4 at 262.818 kb on - strand, within dnaJ4 at 262.827 kb on + strand, within dnaJ4 at 262.827 kb on + strand, within dnaJ4 at 262.827 kb on + strand, within dnaJ4 at 262.881 kb on - strand, within dnaJ4 at 262.897 kb on + strand, within dnaJ4 at 262.908 kb on + strand, within dnaJ4 at 262.927 kb on + strand, within dnaJ4 at 262.928 kb on + strand, within dnaJ4 at 262.936 kb on - strand at 262.941 kb on - strand, within dnaJ4 at 262.946 kb on - strand, within dnaJ4 at 262.963 kb on + strand, within dnaJ4 at 262.966 kb on - strand, within dnaJ4 at 262.971 kb on - strand, within dnaJ4 at 262.989 kb on + strand, within dnaJ4 at 263.011 kb on + strand, within dnaJ4 at 263.022 kb on - strand, within dnaJ4 at 263.024 kb on - strand, within dnaJ4 at 263.034 kb on - strand, within dnaJ4 at 263.034 kb on - strand, within dnaJ4 at 263.053 kb on + strand, within dnaJ4 at 263.068 kb on + strand, within dnaJ4 at 263.076 kb on - strand, within dnaJ4 at 263.076 kb on - strand, within dnaJ4 at 263.076 kb on - strand, within dnaJ4 at 263.102 kb on + strand, within dnaJ4 at 263.109 kb on - strand, within dnaJ4 at 263.109 kb on - strand, within dnaJ4 at 263.111 kb on + strand, within dnaJ4 at 263.116 kb on + strand, within dnaJ4 at 263.119 kb on - strand, within dnaJ4 at 263.119 kb on - strand, within dnaJ4 at 263.124 kb on - strand, within dnaJ4 at 263.124 kb on - strand, within dnaJ4 at 263.178 kb on - strand at 263.185 kb on - strand at 263.195 kb on - strand at 263.225 kb on + strand at 263.230 kb on + strand at 263.233 kb on - strand at 263.237 kb on - strand at 263.238 kb on - strand at 263.267 kb on + strand at 263.296 kb on + strand at 263.525 kb on - strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.609 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.621 kb on + strand at 263.623 kb on - strand at 263.624 kb on - strand at 263.631 kb on + strand at 263.637 kb on + strand at 263.637 kb on + strand at 263.637 kb on + strand at 263.674 kb on + strand at 263.723 kb on + strand at 263.736 kb on + strand at 263.737 kb on + strand at 263.761 kb on + strand at 263.799 kb on + strand at 263.800 kb on + strand at 263.806 kb on - strand at 263.815 kb on + strand at 263.821 kb on - strand at 263.821 kb on - strand at 263.821 kb on - strand at 263.832 kb on + strand, within gidB at 263.847 kb on + strand, within gidB at 263.855 kb on - strand, within gidB at 263.896 kb on + strand, within gidB at 263.896 kb on + strand, within gidB at 263.939 kb on + strand, within gidB at 263.955 kb on + strand, within gidB at 264.013 kb on + strand, within gidB at 264.021 kb on - strand, within gidB at 264.041 kb on + strand, within gidB at 264.055 kb on - strand, within gidB at 264.060 kb on - strand, within gidB at 264.075 kb on - strand, within gidB at 264.100 kb on + strand, within gidB at 264.119 kb on + strand, within gidB at 264.119 kb on + strand, within gidB at 264.119 kb on - strand, within gidB at 264.153 kb on + strand, within gidB at 264.156 kb on + strand, within gidB at 264.186 kb on + strand, within gidB
Per-strain Table
Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12 remove 262,367 + +0.7 262,381 - +0.1 262,383 + -1.6 262,386 - +0.1 262,397 - -1.6 262,417 + Synpcc7942_0265 0.12 +0.5 262,422 + Synpcc7942_0265 0.13 -1.4 262,422 - Synpcc7942_0265 0.13 -0.0 262,453 + Synpcc7942_0265 0.25 +0.5 262,454 + Synpcc7942_0265 0.25 -0.9 262,462 - Synpcc7942_0265 0.28 -1.2 262,479 + Synpcc7942_0265 0.34 -2.2 262,503 + Synpcc7942_0265 0.43 -1.1 262,503 + Synpcc7942_0265 0.43 -1.4 262,514 + Synpcc7942_0265 0.47 -0.4 262,535 + Synpcc7942_0265 0.54 -1.4 262,545 + Synpcc7942_0265 0.58 -1.8 262,553 + Synpcc7942_0265 0.61 -1.0 262,561 - Synpcc7942_0265 0.64 -2.5 262,641 - -0.7 262,643 - -1.2 262,656 + -0.1 262,711 - dnaJ4 Synpcc7942_0266 0.13 -2.3 262,718 - dnaJ4 Synpcc7942_0266 0.14 -0.7 262,733 - dnaJ4 Synpcc7942_0266 0.17 -1.0 262,754 + dnaJ4 Synpcc7942_0266 0.21 +0.4 262,789 + dnaJ4 Synpcc7942_0266 0.27 -0.0 262,797 - -0.6 262,797 - dnaJ4 Synpcc7942_0266 0.28 -0.0 262,799 + dnaJ4 Synpcc7942_0266 0.29 +0.2 262,818 - dnaJ4 Synpcc7942_0266 0.32 -0.3 262,827 + dnaJ4 Synpcc7942_0266 0.34 -1.3 262,827 + dnaJ4 Synpcc7942_0266 0.34 -2.0 262,827 + dnaJ4 Synpcc7942_0266 0.34 -1.8 262,881 - dnaJ4 Synpcc7942_0266 0.44 +1.0 262,897 + dnaJ4 Synpcc7942_0266 0.46 -1.9 262,908 + dnaJ4 Synpcc7942_0266 0.48 -1.2 262,927 + dnaJ4 Synpcc7942_0266 0.52 -0.4 262,928 + dnaJ4 Synpcc7942_0266 0.52 -1.0 262,936 - -0.8 262,941 - dnaJ4 Synpcc7942_0266 0.54 -2.6 262,946 - dnaJ4 Synpcc7942_0266 0.55 -1.2 262,963 + dnaJ4 Synpcc7942_0266 0.58 -0.9 262,966 - dnaJ4 Synpcc7942_0266 0.59 -0.1 262,971 - dnaJ4 Synpcc7942_0266 0.60 +1.0 262,989 + dnaJ4 Synpcc7942_0266 0.63 -0.6 263,011 + dnaJ4 Synpcc7942_0266 0.67 -0.2 263,022 - dnaJ4 Synpcc7942_0266 0.69 -0.9 263,024 - dnaJ4 Synpcc7942_0266 0.69 -2.4 263,034 - dnaJ4 Synpcc7942_0266 0.71 -0.2 263,034 - dnaJ4 Synpcc7942_0266 0.71 -1.3 263,053 + dnaJ4 Synpcc7942_0266 0.74 -0.3 263,068 + dnaJ4 Synpcc7942_0266 0.77 -0.0 263,076 - dnaJ4 Synpcc7942_0266 0.78 -0.4 263,076 - dnaJ4 Synpcc7942_0266 0.78 -1.3 263,076 - dnaJ4 Synpcc7942_0266 0.78 -1.3 263,102 + dnaJ4 Synpcc7942_0266 0.83 -1.1 263,109 - dnaJ4 Synpcc7942_0266 0.84 -0.6 263,109 - dnaJ4 Synpcc7942_0266 0.84 -1.1 263,111 + dnaJ4 Synpcc7942_0266 0.85 -0.5 263,116 + dnaJ4 Synpcc7942_0266 0.86 -1.6 263,119 - dnaJ4 Synpcc7942_0266 0.86 -1.9 263,119 - dnaJ4 Synpcc7942_0266 0.86 +0.3 263,124 - dnaJ4 Synpcc7942_0266 0.87 +0.7 263,124 - dnaJ4 Synpcc7942_0266 0.87 -0.8 263,178 - -2.0 263,185 - -1.0 263,195 - +0.8 263,225 + -1.1 263,230 + -0.3 263,233 - -0.7 263,237 - +0.2 263,238 - -1.7 263,267 + -0.2 263,296 + -0.1 263,525 - +1.4 263,603 + +1.7 263,603 + +0.9 263,603 + -0.2 263,603 + +0.3 263,603 + +0.1 263,603 + +0.1 263,603 + -0.9 263,609 - -0.6 263,611 - +0.3 263,611 - -2.8 263,611 - +0.4 263,611 - -0.0 263,611 - -1.4 263,611 - +0.7 263,611 - +0.1 263,611 - +1.0 263,611 - +0.5 263,611 - -0.8 263,611 - +0.7 263,621 + -0.8 263,623 - +1.0 263,624 - -0.4 263,631 + -0.0 263,637 + +0.1 263,637 + +0.6 263,637 + +0.1 263,674 + +0.2 263,723 + +0.4 263,736 + -2.2 263,737 + -0.3 263,761 + -2.4 263,799 + +1.0 263,800 + -1.3 263,806 - -2.3 263,815 + -1.6 263,821 - -3.3 263,821 - -3.3 263,821 - -2.0 263,832 + gidB Synpcc7942_0267 0.10 -3.5 263,847 + gidB Synpcc7942_0267 0.12 -2.0 263,855 - gidB Synpcc7942_0267 0.13 -3.2 263,896 + gidB Synpcc7942_0267 0.19 -4.3 263,896 + gidB Synpcc7942_0267 0.19 -3.6 263,939 + gidB Synpcc7942_0267 0.25 -3.4 263,955 + gidB Synpcc7942_0267 0.27 -2.1 264,013 + gidB Synpcc7942_0267 0.35 -1.0 264,021 - gidB Synpcc7942_0267 0.36 -2.3 264,041 + gidB Synpcc7942_0267 0.39 -3.8 264,055 - gidB Synpcc7942_0267 0.41 -2.6 264,060 - gidB Synpcc7942_0267 0.42 -1.3 264,075 - gidB Synpcc7942_0267 0.44 -3.3 264,100 + gidB Synpcc7942_0267 0.47 -2.6 264,119 + gidB Synpcc7942_0267 0.50 -1.2 264,119 + gidB Synpcc7942_0267 0.50 -4.1 264,119 - gidB Synpcc7942_0267 0.50 -4.8 264,153 + gidB Synpcc7942_0267 0.54 -1.4 264,156 + gidB Synpcc7942_0267 0.55 -2.1 264,186 + gidB Synpcc7942_0267 0.59 -2.1
Or see this region's nucleotide sequence