Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0265

Experiment: Flask growth in 60 uE Light-Dark 12:12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0263 and uppS overlap by 4 nucleotidesuppS and Synpcc7942_0265 are separated by 12 nucleotidesSynpcc7942_0265 and dnaJ4 overlap by 23 nucleotides Synpcc7942_0263: Synpcc7942_0263 - Protein of unknown function DUF147, at 260,700 to 261,620 _0263 Synpcc7942_0264: uppS - Undecaprenyl pyrophosphate synthetase, at 261,617 to 262,372 uppS Synpcc7942_0265: Synpcc7942_0265 - hypothetical protein, at 262,385 to 262,660 _0265 Synpcc7942_0266: dnaJ4 - Heat shock protein DnaJ-like, at 262,638 to 263,195 dnaJ4 Position (kb) 262 263Strain fitness (log2 ratio) -3 -2 -1 0 1at 262.367 kb on + strandat 262.381 kb on - strandat 262.383 kb on + strandat 262.386 kb on - strandat 262.397 kb on - strandat 262.417 kb on + strand, within Synpcc7942_0265at 262.422 kb on + strand, within Synpcc7942_0265at 262.422 kb on - strand, within Synpcc7942_0265at 262.453 kb on + strand, within Synpcc7942_0265at 262.454 kb on + strand, within Synpcc7942_0265at 262.462 kb on - strand, within Synpcc7942_0265at 262.479 kb on + strand, within Synpcc7942_0265at 262.503 kb on + strand, within Synpcc7942_0265at 262.503 kb on + strand, within Synpcc7942_0265at 262.514 kb on + strand, within Synpcc7942_0265at 262.535 kb on + strand, within Synpcc7942_0265at 262.545 kb on + strand, within Synpcc7942_0265at 262.553 kb on + strand, within Synpcc7942_0265at 262.561 kb on - strand, within Synpcc7942_0265at 262.641 kb on - strandat 262.643 kb on - strandat 262.656 kb on + strandat 262.711 kb on - strand, within dnaJ4at 262.718 kb on - strand, within dnaJ4at 262.733 kb on - strand, within dnaJ4at 262.754 kb on + strand, within dnaJ4at 262.789 kb on + strand, within dnaJ4at 262.797 kb on - strandat 262.797 kb on - strand, within dnaJ4at 262.799 kb on + strand, within dnaJ4at 262.818 kb on - strand, within dnaJ4at 262.827 kb on + strand, within dnaJ4at 262.827 kb on + strand, within dnaJ4at 262.827 kb on + strand, within dnaJ4at 262.881 kb on - strand, within dnaJ4at 262.897 kb on + strand, within dnaJ4at 262.908 kb on + strand, within dnaJ4at 262.927 kb on + strand, within dnaJ4at 262.928 kb on + strand, within dnaJ4at 262.936 kb on - strandat 262.941 kb on - strand, within dnaJ4at 262.946 kb on - strand, within dnaJ4at 262.963 kb on + strand, within dnaJ4at 262.966 kb on - strand, within dnaJ4at 262.971 kb on - strand, within dnaJ4at 262.989 kb on + strand, within dnaJ4at 263.011 kb on + strand, within dnaJ4at 263.022 kb on - strand, within dnaJ4at 263.024 kb on - strand, within dnaJ4at 263.034 kb on - strand, within dnaJ4at 263.034 kb on - strand, within dnaJ4at 263.053 kb on + strand, within dnaJ4at 263.068 kb on + strand, within dnaJ4at 263.076 kb on - strand, within dnaJ4at 263.076 kb on - strand, within dnaJ4at 263.076 kb on - strand, within dnaJ4at 263.102 kb on + strand, within dnaJ4at 263.109 kb on - strand, within dnaJ4at 263.109 kb on - strand, within dnaJ4at 263.111 kb on + strand, within dnaJ4at 263.116 kb on + strand, within dnaJ4at 263.119 kb on - strand, within dnaJ4at 263.119 kb on - strand, within dnaJ4at 263.124 kb on - strand, within dnaJ4at 263.124 kb on - strand, within dnaJ4at 263.178 kb on - strandat 263.185 kb on - strandat 263.195 kb on - strandat 263.225 kb on + strandat 263.230 kb on + strandat 263.233 kb on - strandat 263.237 kb on - strandat 263.238 kb on - strandat 263.267 kb on + strandat 263.296 kb on + strandat 263.525 kb on - strandat 263.603 kb on + strandat 263.603 kb on + strandat 263.603 kb on + strandat 263.603 kb on + strandat 263.603 kb on + strandat 263.603 kb on + strandat 263.603 kb on + strandat 263.609 kb on - strandat 263.611 kb on - strandat 263.611 kb on - strandat 263.611 kb on - strandat 263.611 kb on - strandat 263.611 kb on - strandat 263.611 kb on - strandat 263.611 kb on - strandat 263.611 kb on - strandat 263.611 kb on - strandat 263.611 kb on - strandat 263.611 kb on - strandat 263.621 kb on + strandat 263.623 kb on - strandat 263.624 kb on - strandat 263.631 kb on + strandat 263.637 kb on + strandat 263.637 kb on + strandat 263.637 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12
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262,367 + +0.7
262,381 - +0.1
262,383 + -1.6
262,386 - +0.1
262,397 - -1.6
262,417 + Synpcc7942_0265 0.12 +0.5
262,422 + Synpcc7942_0265 0.13 -1.4
262,422 - Synpcc7942_0265 0.13 -0.0
262,453 + Synpcc7942_0265 0.25 +0.5
262,454 + Synpcc7942_0265 0.25 -0.9
262,462 - Synpcc7942_0265 0.28 -1.2
262,479 + Synpcc7942_0265 0.34 -2.2
262,503 + Synpcc7942_0265 0.43 -1.1
262,503 + Synpcc7942_0265 0.43 -1.4
262,514 + Synpcc7942_0265 0.47 -0.4
262,535 + Synpcc7942_0265 0.54 -1.4
262,545 + Synpcc7942_0265 0.58 -1.8
262,553 + Synpcc7942_0265 0.61 -1.0
262,561 - Synpcc7942_0265 0.64 -2.5
262,641 - -0.7
262,643 - -1.2
262,656 + -0.1
262,711 - dnaJ4 Synpcc7942_0266 0.13 -2.3
262,718 - dnaJ4 Synpcc7942_0266 0.14 -0.7
262,733 - dnaJ4 Synpcc7942_0266 0.17 -1.0
262,754 + dnaJ4 Synpcc7942_0266 0.21 +0.4
262,789 + dnaJ4 Synpcc7942_0266 0.27 -0.0
262,797 - -0.6
262,797 - dnaJ4 Synpcc7942_0266 0.28 -0.0
262,799 + dnaJ4 Synpcc7942_0266 0.29 +0.2
262,818 - dnaJ4 Synpcc7942_0266 0.32 -0.3
262,827 + dnaJ4 Synpcc7942_0266 0.34 -1.3
262,827 + dnaJ4 Synpcc7942_0266 0.34 -2.0
262,827 + dnaJ4 Synpcc7942_0266 0.34 -1.8
262,881 - dnaJ4 Synpcc7942_0266 0.44 +1.0
262,897 + dnaJ4 Synpcc7942_0266 0.46 -1.9
262,908 + dnaJ4 Synpcc7942_0266 0.48 -1.2
262,927 + dnaJ4 Synpcc7942_0266 0.52 -0.4
262,928 + dnaJ4 Synpcc7942_0266 0.52 -1.0
262,936 - -0.8
262,941 - dnaJ4 Synpcc7942_0266 0.54 -2.6
262,946 - dnaJ4 Synpcc7942_0266 0.55 -1.2
262,963 + dnaJ4 Synpcc7942_0266 0.58 -0.9
262,966 - dnaJ4 Synpcc7942_0266 0.59 -0.1
262,971 - dnaJ4 Synpcc7942_0266 0.60 +1.0
262,989 + dnaJ4 Synpcc7942_0266 0.63 -0.6
263,011 + dnaJ4 Synpcc7942_0266 0.67 -0.2
263,022 - dnaJ4 Synpcc7942_0266 0.69 -0.9
263,024 - dnaJ4 Synpcc7942_0266 0.69 -2.4
263,034 - dnaJ4 Synpcc7942_0266 0.71 -0.2
263,034 - dnaJ4 Synpcc7942_0266 0.71 -1.3
263,053 + dnaJ4 Synpcc7942_0266 0.74 -0.3
263,068 + dnaJ4 Synpcc7942_0266 0.77 -0.0
263,076 - dnaJ4 Synpcc7942_0266 0.78 -0.4
263,076 - dnaJ4 Synpcc7942_0266 0.78 -1.3
263,076 - dnaJ4 Synpcc7942_0266 0.78 -1.3
263,102 + dnaJ4 Synpcc7942_0266 0.83 -1.1
263,109 - dnaJ4 Synpcc7942_0266 0.84 -0.6
263,109 - dnaJ4 Synpcc7942_0266 0.84 -1.1
263,111 + dnaJ4 Synpcc7942_0266 0.85 -0.5
263,116 + dnaJ4 Synpcc7942_0266 0.86 -1.6
263,119 - dnaJ4 Synpcc7942_0266 0.86 -1.9
263,119 - dnaJ4 Synpcc7942_0266 0.86 +0.3
263,124 - dnaJ4 Synpcc7942_0266 0.87 +0.7
263,124 - dnaJ4 Synpcc7942_0266 0.87 -0.8
263,178 - -2.0
263,185 - -1.0
263,195 - +0.8
263,225 + -1.1
263,230 + -0.3
263,233 - -0.7
263,237 - +0.2
263,238 - -1.7
263,267 + -0.2
263,296 + -0.1
263,525 - +1.4
263,603 + +1.7
263,603 + +0.9
263,603 + -0.2
263,603 + +0.3
263,603 + +0.1
263,603 + +0.1
263,603 + -0.9
263,609 - -0.6
263,611 - +0.3
263,611 - -2.8
263,611 - +0.4
263,611 - -0.0
263,611 - -1.4
263,611 - +0.7
263,611 - +0.1
263,611 - +1.0
263,611 - +0.5
263,611 - -0.8
263,611 - +0.7
263,621 + -0.8
263,623 - +1.0
263,624 - -0.4
263,631 + -0.0
263,637 + +0.1
263,637 + +0.6
263,637 + +0.1

Or see this region's nucleotide sequence