Experiment: Flask growth in 60 uE Light-Dark 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0242 and hliC are separated by 103 nucleotides hliC and glgP are separated by 99 nucleotides
Synpcc7942_0242: Synpcc7942_0242 - K+-dependent Na+/Ca+ exchanger related-protein, at 237,166 to 238,275
_0242
Synpcc7942_0243: hliC - possible high light inducible polypeptide HliC, at 238,379 to 238,522
hliC
Synpcc7942_0244: glgP - Glycogen/starch/alpha-glucan phosphorylase, at 238,622 to 241,156
glgP
Position (kb) 238
239 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 237.392 kb on + strand, within Synpcc7942_0242 at 237.489 kb on + strand, within Synpcc7942_0242 at 237.489 kb on + strand, within Synpcc7942_0242 at 237.498 kb on - strand, within Synpcc7942_0242 at 237.500 kb on + strand, within Synpcc7942_0242 at 237.542 kb on + strand, within Synpcc7942_0242 at 237.550 kb on - strand, within Synpcc7942_0242 at 237.557 kb on + strand, within Synpcc7942_0242 at 237.581 kb on - strand at 237.595 kb on - strand, within Synpcc7942_0242 at 237.597 kb on + strand, within Synpcc7942_0242 at 237.619 kb on + strand, within Synpcc7942_0242 at 237.634 kb on - strand, within Synpcc7942_0242 at 237.636 kb on - strand, within Synpcc7942_0242 at 237.645 kb on + strand, within Synpcc7942_0242 at 237.652 kb on + strand, within Synpcc7942_0242 at 237.660 kb on - strand, within Synpcc7942_0242 at 237.680 kb on + strand, within Synpcc7942_0242 at 237.695 kb on - strand, within Synpcc7942_0242 at 237.706 kb on - strand at 237.709 kb on + strand, within Synpcc7942_0242 at 237.717 kb on - strand, within Synpcc7942_0242 at 237.741 kb on + strand, within Synpcc7942_0242 at 237.742 kb on + strand, within Synpcc7942_0242 at 237.782 kb on - strand, within Synpcc7942_0242 at 237.791 kb on - strand, within Synpcc7942_0242 at 237.825 kb on - strand, within Synpcc7942_0242 at 237.839 kb on + strand, within Synpcc7942_0242 at 237.839 kb on + strand, within Synpcc7942_0242 at 237.886 kb on + strand, within Synpcc7942_0242 at 237.895 kb on + strand, within Synpcc7942_0242 at 237.895 kb on + strand, within Synpcc7942_0242 at 237.895 kb on + strand, within Synpcc7942_0242 at 237.895 kb on + strand, within Synpcc7942_0242 at 237.895 kb on + strand, within Synpcc7942_0242 at 237.903 kb on - strand, within Synpcc7942_0242 at 237.903 kb on - strand, within Synpcc7942_0242 at 237.903 kb on - strand, within Synpcc7942_0242 at 237.903 kb on - strand, within Synpcc7942_0242 at 237.903 kb on - strand, within Synpcc7942_0242 at 237.903 kb on - strand, within Synpcc7942_0242 at 237.903 kb on - strand, within Synpcc7942_0242 at 237.903 kb on - strand, within Synpcc7942_0242 at 237.916 kb on - strand, within Synpcc7942_0242 at 237.921 kb on - strand, within Synpcc7942_0242 at 237.921 kb on - strand, within Synpcc7942_0242 at 237.972 kb on + strand, within Synpcc7942_0242 at 237.973 kb on + strand, within Synpcc7942_0242 at 237.973 kb on + strand, within Synpcc7942_0242 at 237.981 kb on - strand, within Synpcc7942_0242 at 237.985 kb on + strand, within Synpcc7942_0242 at 237.988 kb on - strand, within Synpcc7942_0242 at 238.069 kb on + strand at 238.069 kb on + strand, within Synpcc7942_0242 at 238.069 kb on + strand, within Synpcc7942_0242 at 238.069 kb on + strand, within Synpcc7942_0242 at 238.069 kb on + strand, within Synpcc7942_0242 at 238.069 kb on + strand, within Synpcc7942_0242 at 238.077 kb on - strand, within Synpcc7942_0242 at 238.077 kb on - strand, within Synpcc7942_0242 at 238.080 kb on + strand, within Synpcc7942_0242 at 238.109 kb on - strand, within Synpcc7942_0242 at 238.131 kb on - strand, within Synpcc7942_0242 at 238.134 kb on + strand, within Synpcc7942_0242 at 238.134 kb on + strand, within Synpcc7942_0242 at 238.142 kb on - strand, within Synpcc7942_0242 at 238.142 kb on - strand, within Synpcc7942_0242 at 238.142 kb on - strand, within Synpcc7942_0242 at 238.156 kb on + strand, within Synpcc7942_0242 at 238.156 kb on - strand, within Synpcc7942_0242 at 238.254 kb on + strand at 238.254 kb on + strand at 238.254 kb on + strand at 238.254 kb on + strand at 238.262 kb on - strand at 238.262 kb on - strand at 238.262 kb on - strand at 238.262 kb on - strand at 238.272 kb on + strand at 238.273 kb on + strand at 238.275 kb on - strand at 238.278 kb on + strand at 238.342 kb on - strand at 238.344 kb on - strand at 238.358 kb on + strand at 238.395 kb on - strand, within hliC at 238.478 kb on - strand, within hliC at 238.643 kb on + strand at 238.648 kb on + strand at 238.651 kb on - strand at 238.651 kb on - strand at 238.661 kb on - strand at 238.662 kb on + strand at 238.667 kb on + strand at 238.670 kb on - strand at 238.709 kb on - strand at 238.709 kb on - strand at 238.709 kb on - strand at 238.725 kb on + strand at 238.725 kb on + strand at 238.727 kb on + strand at 238.733 kb on - strand at 238.802 kb on + strand at 238.805 kb on - strand at 238.823 kb on + strand at 238.861 kb on - strand at 238.877 kb on - strand, within glgP at 238.883 kb on - strand, within glgP at 238.884 kb on + strand, within glgP at 238.897 kb on - strand, within glgP at 238.899 kb on + strand, within glgP at 238.910 kb on + strand, within glgP at 238.915 kb on - strand, within glgP at 238.918 kb on - strand, within glgP at 238.918 kb on - strand, within glgP at 238.918 kb on - strand, within glgP at 238.954 kb on - strand, within glgP at 238.959 kb on - strand, within glgP at 238.964 kb on - strand, within glgP at 238.964 kb on - strand, within glgP at 238.978 kb on - strand, within glgP at 239.035 kb on - strand, within glgP at 239.106 kb on - strand, within glgP at 239.107 kb on - strand, within glgP at 239.126 kb on + strand, within glgP at 239.136 kb on + strand, within glgP at 239.144 kb on - strand, within glgP at 239.166 kb on + strand, within glgP at 239.225 kb on + strand, within glgP at 239.225 kb on + strand, within glgP at 239.225 kb on + strand, within glgP at 239.225 kb on + strand, within glgP at 239.225 kb on + strand, within glgP at 239.225 kb on + strand, within glgP at 239.225 kb on + strand, within glgP at 239.225 kb on + strand, within glgP at 239.233 kb on - strand, within glgP at 239.233 kb on - strand, within glgP at 239.297 kb on + strand, within glgP at 239.297 kb on + strand, within glgP at 239.297 kb on + strand, within glgP at 239.297 kb on + strand, within glgP at 239.297 kb on + strand, within glgP at 239.304 kb on + strand, within glgP at 239.305 kb on - strand, within glgP at 239.305 kb on - strand, within glgP at 239.305 kb on - strand, within glgP at 239.305 kb on - strand, within glgP at 239.334 kb on - strand, within glgP at 239.341 kb on + strand, within glgP at 239.341 kb on + strand, within glgP at 239.349 kb on - strand, within glgP at 239.349 kb on - strand, within glgP at 239.373 kb on + strand, within glgP at 239.375 kb on + strand, within glgP at 239.375 kb on + strand, within glgP at 239.383 kb on + strand, within glgP at 239.383 kb on - strand, within glgP at 239.383 kb on - strand, within glgP at 239.383 kb on - strand, within glgP at 239.389 kb on + strand, within glgP at 239.393 kb on + strand, within glgP at 239.397 kb on - strand, within glgP at 239.401 kb on - strand, within glgP at 239.408 kb on + strand, within glgP at 239.496 kb on - strand, within glgP at 239.501 kb on + strand, within glgP
Per-strain Table
Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12 remove 237,392 + Synpcc7942_0242 0.20 +0.0 237,489 + Synpcc7942_0242 0.29 -1.3 237,489 + Synpcc7942_0242 0.29 -0.6 237,498 - Synpcc7942_0242 0.30 -1.2 237,500 + Synpcc7942_0242 0.30 +0.0 237,542 + Synpcc7942_0242 0.34 -0.4 237,550 - Synpcc7942_0242 0.35 -0.4 237,557 + Synpcc7942_0242 0.35 +0.8 237,581 - -0.6 237,595 - Synpcc7942_0242 0.39 +0.2 237,597 + Synpcc7942_0242 0.39 -2.3 237,619 + Synpcc7942_0242 0.41 -0.3 237,634 - Synpcc7942_0242 0.42 -2.9 237,636 - Synpcc7942_0242 0.42 -0.1 237,645 + Synpcc7942_0242 0.43 +0.0 237,652 + Synpcc7942_0242 0.44 +0.0 237,660 - Synpcc7942_0242 0.45 +0.3 237,680 + Synpcc7942_0242 0.46 +1.0 237,695 - Synpcc7942_0242 0.48 -0.7 237,706 - +1.0 237,709 + Synpcc7942_0242 0.49 -0.3 237,717 - Synpcc7942_0242 0.50 -0.1 237,741 + Synpcc7942_0242 0.52 -2.0 237,742 + Synpcc7942_0242 0.52 +0.2 237,782 - Synpcc7942_0242 0.55 -0.6 237,791 - Synpcc7942_0242 0.56 +0.0 237,825 - Synpcc7942_0242 0.59 -0.2 237,839 + Synpcc7942_0242 0.61 -0.7 237,839 + Synpcc7942_0242 0.61 +0.3 237,886 + Synpcc7942_0242 0.65 -0.9 237,895 + Synpcc7942_0242 0.66 +0.5 237,895 + Synpcc7942_0242 0.66 -2.0 237,895 + Synpcc7942_0242 0.66 -0.7 237,895 + Synpcc7942_0242 0.66 +0.8 237,895 + Synpcc7942_0242 0.66 -1.2 237,903 - Synpcc7942_0242 0.66 -1.1 237,903 - Synpcc7942_0242 0.66 -1.0 237,903 - Synpcc7942_0242 0.66 -0.6 237,903 - Synpcc7942_0242 0.66 -2.2 237,903 - Synpcc7942_0242 0.66 -0.3 237,903 - Synpcc7942_0242 0.66 -2.2 237,903 - Synpcc7942_0242 0.66 -0.3 237,903 - Synpcc7942_0242 0.66 -1.2 237,916 - Synpcc7942_0242 0.68 -0.2 237,921 - Synpcc7942_0242 0.68 -1.6 237,921 - Synpcc7942_0242 0.68 -0.0 237,972 + Synpcc7942_0242 0.73 -0.0 237,973 + Synpcc7942_0242 0.73 +0.2 237,973 + Synpcc7942_0242 0.73 -0.7 237,981 - Synpcc7942_0242 0.73 +0.6 237,985 + Synpcc7942_0242 0.74 -0.2 237,988 - Synpcc7942_0242 0.74 -0.8 238,069 + -1.2 238,069 + Synpcc7942_0242 0.81 -0.1 238,069 + Synpcc7942_0242 0.81 -0.2 238,069 + Synpcc7942_0242 0.81 +1.1 238,069 + Synpcc7942_0242 0.81 -0.3 238,069 + Synpcc7942_0242 0.81 -1.1 238,077 - Synpcc7942_0242 0.82 -0.7 238,077 - Synpcc7942_0242 0.82 -0.0 238,080 + Synpcc7942_0242 0.82 -1.3 238,109 - Synpcc7942_0242 0.85 -0.7 238,131 - Synpcc7942_0242 0.87 -2.1 238,134 + Synpcc7942_0242 0.87 -1.6 238,134 + Synpcc7942_0242 0.87 -0.7 238,142 - Synpcc7942_0242 0.88 -0.9 238,142 - Synpcc7942_0242 0.88 -1.8 238,142 - Synpcc7942_0242 0.88 -0.1 238,156 + Synpcc7942_0242 0.89 -0.8 238,156 - Synpcc7942_0242 0.89 -1.7 238,254 + +1.0 238,254 + +1.2 238,254 + -1.5 238,254 + -0.1 238,262 - -1.4 238,262 - +0.6 238,262 - -1.2 238,262 - -0.5 238,272 + +0.2 238,273 + +0.7 238,275 - +0.6 238,278 + -2.3 238,342 - -0.3 238,344 - -0.4 238,358 + +1.4 238,395 - hliC Synpcc7942_0243 0.11 -1.4 238,478 - hliC Synpcc7942_0243 0.69 -2.0 238,643 + +1.0 238,648 + -0.3 238,651 - -3.2 238,651 - -1.6 238,661 - -0.6 238,662 + -2.6 238,667 + -1.3 238,670 - -2.0 238,709 - -1.3 238,709 - -4.7 238,709 - +0.5 238,725 + -3.6 238,725 + -2.5 238,727 + -2.3 238,733 - -3.3 238,802 + -1.9 238,805 - -1.0 238,823 + -4.1 238,861 - -2.0 238,877 - glgP Synpcc7942_0244 0.10 -4.1 238,883 - glgP Synpcc7942_0244 0.10 -3.1 238,884 + glgP Synpcc7942_0244 0.10 -2.1 238,897 - glgP Synpcc7942_0244 0.11 -3.3 238,899 + glgP Synpcc7942_0244 0.11 -3.4 238,910 + glgP Synpcc7942_0244 0.11 -4.9 238,915 - glgP Synpcc7942_0244 0.12 -4.2 238,918 - glgP Synpcc7942_0244 0.12 -4.9 238,918 - glgP Synpcc7942_0244 0.12 -1.9 238,918 - glgP Synpcc7942_0244 0.12 -2.7 238,954 - glgP Synpcc7942_0244 0.13 -3.2 238,959 - glgP Synpcc7942_0244 0.13 -1.8 238,964 - glgP Synpcc7942_0244 0.13 -2.2 238,964 - glgP Synpcc7942_0244 0.13 -3.2 238,978 - glgP Synpcc7942_0244 0.14 -5.4 239,035 - glgP Synpcc7942_0244 0.16 -2.2 239,106 - glgP Synpcc7942_0244 0.19 -4.0 239,107 - glgP Synpcc7942_0244 0.19 -3.3 239,126 + glgP Synpcc7942_0244 0.20 -1.8 239,136 + glgP Synpcc7942_0244 0.20 -2.6 239,144 - glgP Synpcc7942_0244 0.21 -4.4 239,166 + glgP Synpcc7942_0244 0.21 -1.3 239,225 + glgP Synpcc7942_0244 0.24 -2.7 239,225 + glgP Synpcc7942_0244 0.24 -2.8 239,225 + glgP Synpcc7942_0244 0.24 -2.0 239,225 + glgP Synpcc7942_0244 0.24 -1.4 239,225 + glgP Synpcc7942_0244 0.24 -4.6 239,225 + glgP Synpcc7942_0244 0.24 -4.7 239,225 + glgP Synpcc7942_0244 0.24 -1.7 239,225 + glgP Synpcc7942_0244 0.24 -1.3 239,233 - glgP Synpcc7942_0244 0.24 -2.9 239,233 - glgP Synpcc7942_0244 0.24 -4.0 239,297 + glgP Synpcc7942_0244 0.27 -2.2 239,297 + glgP Synpcc7942_0244 0.27 -2.9 239,297 + glgP Synpcc7942_0244 0.27 -3.2 239,297 + glgP Synpcc7942_0244 0.27 -3.0 239,297 + glgP Synpcc7942_0244 0.27 -3.0 239,304 + glgP Synpcc7942_0244 0.27 -1.6 239,305 - glgP Synpcc7942_0244 0.27 -2.0 239,305 - glgP Synpcc7942_0244 0.27 -3.9 239,305 - glgP Synpcc7942_0244 0.27 -3.3 239,305 - glgP Synpcc7942_0244 0.27 -4.1 239,334 - glgP Synpcc7942_0244 0.28 -4.6 239,341 + glgP Synpcc7942_0244 0.28 +0.1 239,341 + glgP Synpcc7942_0244 0.28 -1.5 239,349 - glgP Synpcc7942_0244 0.29 -3.4 239,349 - glgP Synpcc7942_0244 0.29 -2.6 239,373 + glgP Synpcc7942_0244 0.30 -2.6 239,375 + glgP Synpcc7942_0244 0.30 -0.7 239,375 + glgP Synpcc7942_0244 0.30 -1.9 239,383 + glgP Synpcc7942_0244 0.30 -3.8 239,383 - glgP Synpcc7942_0244 0.30 -3.6 239,383 - glgP Synpcc7942_0244 0.30 -2.8 239,383 - glgP Synpcc7942_0244 0.30 -4.9 239,389 + glgP Synpcc7942_0244 0.30 -5.4 239,393 + glgP Synpcc7942_0244 0.30 -2.3 239,397 - glgP Synpcc7942_0244 0.31 -2.7 239,401 - glgP Synpcc7942_0244 0.31 -3.4 239,408 + glgP Synpcc7942_0244 0.31 -2.0 239,496 - glgP Synpcc7942_0244 0.34 -2.0 239,501 + glgP Synpcc7942_0244 0.35 -2.9
Or see this region's nucleotide sequence