Experiment: Flask growth in 60 uE Light-Dark 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0146 and Synpcc7942_0147 are separated by 303 nucleotides Synpcc7942_0147 and Synpcc7942_0148 are separated by 154 nucleotides Synpcc7942_0148 and Synpcc7942_0149 overlap by 4 nucleotides Synpcc7942_0149 and Synpcc7942_0150 are separated by 7 nucleotides
Synpcc7942_0146: Synpcc7942_0146 - hypothetical protein, at 147,160 to 147,855
_0146
Synpcc7942_0147: Synpcc7942_0147 - hypothetical protein, at 148,159 to 148,491
_0147
Synpcc7942_0148: Synpcc7942_0148 - hypothetical protein, at 148,646 to 150,190
_0148
Synpcc7942_0149: Synpcc7942_0149 - methylated-DNA--protein-cysteine methyltransferase, at 150,187 to 150,744
_0149
Synpcc7942_0150: Synpcc7942_0150 - Dolichyl-phosphate beta-D-mannosyltransferase, at 150,752 to 151,918
_0150
Position (kb) 148
149
150
151 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 147.654 kb on + strand, within Synpcc7942_0146 at 147.655 kb on + strand, within Synpcc7942_0146 at 147.681 kb on + strand, within Synpcc7942_0146 at 147.688 kb on + strand, within Synpcc7942_0146 at 147.688 kb on + strand, within Synpcc7942_0146 at 147.706 kb on - strand, within Synpcc7942_0146 at 147.726 kb on + strand, within Synpcc7942_0146 at 147.726 kb on + strand, within Synpcc7942_0146 at 147.759 kb on + strand, within Synpcc7942_0146 at 147.759 kb on + strand, within Synpcc7942_0146 at 147.767 kb on - strand, within Synpcc7942_0146 at 147.770 kb on + strand, within Synpcc7942_0146 at 147.770 kb on + strand, within Synpcc7942_0146 at 147.770 kb on + strand, within Synpcc7942_0146 at 147.770 kb on + strand, within Synpcc7942_0146 at 147.778 kb on + strand, within Synpcc7942_0146 at 147.778 kb on - strand, within Synpcc7942_0146 at 147.778 kb on - strand, within Synpcc7942_0146 at 147.793 kb on + strand at 147.793 kb on + strand at 147.795 kb on - strand at 147.802 kb on - strand at 147.820 kb on + strand at 147.838 kb on + strand at 147.838 kb on + strand at 147.846 kb on - strand at 147.858 kb on - strand at 147.858 kb on - strand at 147.877 kb on - strand at 147.888 kb on + strand at 147.888 kb on + strand at 147.896 kb on - strand at 147.896 kb on - strand at 147.896 kb on - strand at 147.896 kb on - strand at 147.896 kb on - strand at 147.897 kb on - strand at 147.925 kb on - strand at 147.938 kb on + strand at 147.940 kb on + strand at 147.955 kb on + strand at 147.955 kb on + strand at 147.955 kb on + strand at 147.957 kb on + strand at 147.965 kb on - strand at 147.981 kb on - strand at 148.016 kb on - strand at 148.032 kb on + strand at 148.040 kb on - strand at 148.047 kb on + strand at 148.047 kb on + strand at 148.049 kb on + strand at 148.055 kb on - strand at 148.060 kb on + strand at 148.078 kb on - strand at 148.080 kb on + strand at 148.080 kb on + strand at 148.089 kb on + strand at 148.103 kb on + strand at 148.103 kb on + strand at 148.111 kb on - strand at 148.135 kb on + strand at 148.143 kb on - strand at 148.150 kb on + strand at 148.158 kb on - strand at 148.194 kb on + strand, within Synpcc7942_0147 at 148.194 kb on + strand, within Synpcc7942_0147 at 148.201 kb on - strand, within Synpcc7942_0147 at 148.201 kb on - strand, within Synpcc7942_0147 at 148.201 kb on - strand, within Synpcc7942_0147 at 148.201 kb on - strand, within Synpcc7942_0147 at 148.201 kb on - strand, within Synpcc7942_0147 at 148.201 kb on - strand, within Synpcc7942_0147 at 148.251 kb on + strand, within Synpcc7942_0147 at 148.251 kb on + strand, within Synpcc7942_0147 at 148.251 kb on + strand, within Synpcc7942_0147 at 148.251 kb on + strand, within Synpcc7942_0147 at 148.251 kb on + strand, within Synpcc7942_0147 at 148.251 kb on - strand, within Synpcc7942_0147 at 148.253 kb on + strand, within Synpcc7942_0147 at 148.259 kb on + strand, within Synpcc7942_0147 at 148.259 kb on - strand, within Synpcc7942_0147 at 148.259 kb on - strand, within Synpcc7942_0147 at 148.259 kb on - strand, within Synpcc7942_0147 at 148.261 kb on - strand, within Synpcc7942_0147 at 148.261 kb on - strand, within Synpcc7942_0147 at 148.261 kb on - strand, within Synpcc7942_0147 at 148.287 kb on + strand, within Synpcc7942_0147 at 148.287 kb on + strand, within Synpcc7942_0147 at 148.287 kb on + strand, within Synpcc7942_0147 at 148.287 kb on + strand, within Synpcc7942_0147 at 148.292 kb on + strand, within Synpcc7942_0147 at 148.295 kb on - strand, within Synpcc7942_0147 at 148.295 kb on - strand, within Synpcc7942_0147 at 148.304 kb on + strand, within Synpcc7942_0147 at 148.312 kb on - strand, within Synpcc7942_0147 at 148.312 kb on - strand, within Synpcc7942_0147 at 148.317 kb on + strand, within Synpcc7942_0147 at 148.317 kb on + strand, within Synpcc7942_0147 at 148.376 kb on - strand, within Synpcc7942_0147 at 148.381 kb on - strand, within Synpcc7942_0147 at 148.393 kb on - strand, within Synpcc7942_0147 at 148.394 kb on - strand, within Synpcc7942_0147 at 148.408 kb on - strand, within Synpcc7942_0147 at 148.415 kb on + strand, within Synpcc7942_0147 at 148.427 kb on - strand, within Synpcc7942_0147 at 148.439 kb on + strand, within Synpcc7942_0147 at 148.466 kb on + strand at 148.505 kb on - strand at 148.519 kb on + strand at 148.522 kb on - strand at 148.522 kb on - strand at 148.524 kb on + strand at 148.532 kb on - strand at 148.569 kb on - strand at 148.570 kb on - strand at 148.592 kb on + strand at 148.596 kb on - strand at 148.607 kb on - strand at 148.625 kb on + strand at 148.636 kb on + strand at 149.657 kb on - strand, within Synpcc7942_0148 at 149.718 kb on + strand, within Synpcc7942_0148 at 150.185 kb on - strand at 150.191 kb on - strand at 150.214 kb on + strand at 150.224 kb on - strand at 150.241 kb on + strand at 150.258 kb on - strand, within Synpcc7942_0149 at 150.265 kb on + strand, within Synpcc7942_0149 at 150.275 kb on - strand, within Synpcc7942_0149 at 150.330 kb on + strand, within Synpcc7942_0149 at 150.338 kb on - strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.365 kb on + strand, within Synpcc7942_0149 at 150.378 kb on - strand, within Synpcc7942_0149 at 150.378 kb on - strand, within Synpcc7942_0149 at 150.392 kb on + strand, within Synpcc7942_0149 at 150.435 kb on + strand, within Synpcc7942_0149 at 150.440 kb on + strand, within Synpcc7942_0149 at 150.464 kb on - strand, within Synpcc7942_0149 at 150.465 kb on + strand, within Synpcc7942_0149 at 150.487 kb on + strand, within Synpcc7942_0149 at 150.649 kb on + strand, within Synpcc7942_0149 at 150.664 kb on - strand, within Synpcc7942_0149 at 150.671 kb on - strand, within Synpcc7942_0149 at 150.679 kb on - strand, within Synpcc7942_0149 at 150.699 kb on + strand at 150.748 kb on + strand at 150.796 kb on - strand at 150.951 kb on + strand, within Synpcc7942_0150 at 151.019 kb on - strand, within Synpcc7942_0150 at 151.039 kb on + strand, within Synpcc7942_0150 at 151.045 kb on - strand, within Synpcc7942_0150 at 151.079 kb on + strand, within Synpcc7942_0150 at 151.135 kb on + strand, within Synpcc7942_0150 at 151.165 kb on + strand, within Synpcc7942_0150 at 151.167 kb on + strand, within Synpcc7942_0150 at 151.167 kb on + strand, within Synpcc7942_0150 at 151.167 kb on + strand, within Synpcc7942_0150 at 151.175 kb on - strand, within Synpcc7942_0150 at 151.183 kb on - strand, within Synpcc7942_0150 at 151.185 kb on - strand, within Synpcc7942_0150 at 151.185 kb on - strand, within Synpcc7942_0150 at 151.185 kb on - strand, within Synpcc7942_0150
Per-strain Table
Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 12:12 remove 147,654 + Synpcc7942_0146 0.71 +0.4 147,655 + Synpcc7942_0146 0.71 +0.1 147,681 + Synpcc7942_0146 0.75 -0.5 147,688 + Synpcc7942_0146 0.76 +0.1 147,688 + Synpcc7942_0146 0.76 +0.1 147,706 - Synpcc7942_0146 0.78 -0.4 147,726 + Synpcc7942_0146 0.81 +0.5 147,726 + Synpcc7942_0146 0.81 +0.4 147,759 + Synpcc7942_0146 0.86 +1.0 147,759 + Synpcc7942_0146 0.86 +0.8 147,767 - Synpcc7942_0146 0.87 -0.8 147,770 + Synpcc7942_0146 0.88 -0.3 147,770 + Synpcc7942_0146 0.88 +1.3 147,770 + Synpcc7942_0146 0.88 +1.3 147,770 + Synpcc7942_0146 0.88 +0.5 147,778 + Synpcc7942_0146 0.89 +0.5 147,778 - Synpcc7942_0146 0.89 +0.7 147,778 - Synpcc7942_0146 0.89 -1.1 147,793 + -0.2 147,793 + +0.1 147,795 - -0.8 147,802 - +0.6 147,820 + +0.3 147,838 + -1.0 147,838 + +0.8 147,846 - +0.5 147,858 - -1.2 147,858 - -1.7 147,877 - +0.2 147,888 + -3.3 147,888 + +0.4 147,896 - -0.4 147,896 - +0.1 147,896 - +0.5 147,896 - +0.5 147,896 - -2.4 147,897 - +0.7 147,925 - -1.1 147,938 + -0.5 147,940 + +0.6 147,955 + +0.2 147,955 + +0.0 147,955 + -0.1 147,957 + +0.7 147,965 - +0.3 147,981 - -1.7 148,016 - +0.1 148,032 + -0.4 148,040 - -1.8 148,047 + +0.9 148,047 + +2.1 148,049 + +0.1 148,055 - +0.5 148,060 + +0.4 148,078 - +0.5 148,080 + -1.3 148,080 + -0.9 148,089 + -0.9 148,103 + -1.0 148,103 + +1.2 148,111 - +0.8 148,135 + +0.3 148,143 - +0.3 148,150 + +1.1 148,158 - +0.3 148,194 + Synpcc7942_0147 0.11 +0.6 148,194 + Synpcc7942_0147 0.11 -0.2 148,201 - Synpcc7942_0147 0.13 -0.9 148,201 - Synpcc7942_0147 0.13 -0.3 148,201 - Synpcc7942_0147 0.13 +0.6 148,201 - Synpcc7942_0147 0.13 +1.0 148,201 - Synpcc7942_0147 0.13 +0.5 148,201 - Synpcc7942_0147 0.13 -0.4 148,251 + Synpcc7942_0147 0.28 -1.6 148,251 + Synpcc7942_0147 0.28 +0.3 148,251 + Synpcc7942_0147 0.28 -1.6 148,251 + Synpcc7942_0147 0.28 -1.3 148,251 + Synpcc7942_0147 0.28 +0.6 148,251 - Synpcc7942_0147 0.28 +0.2 148,253 + Synpcc7942_0147 0.28 -0.6 148,259 + Synpcc7942_0147 0.30 -0.9 148,259 - Synpcc7942_0147 0.30 -3.1 148,259 - Synpcc7942_0147 0.30 -0.4 148,259 - Synpcc7942_0147 0.30 -0.5 148,261 - Synpcc7942_0147 0.31 +0.5 148,261 - Synpcc7942_0147 0.31 -1.0 148,261 - Synpcc7942_0147 0.31 -0.3 148,287 + Synpcc7942_0147 0.38 +0.7 148,287 + Synpcc7942_0147 0.38 -0.9 148,287 + Synpcc7942_0147 0.38 +0.6 148,287 + Synpcc7942_0147 0.38 +0.5 148,292 + Synpcc7942_0147 0.40 +0.6 148,295 - Synpcc7942_0147 0.41 +0.7 148,295 - Synpcc7942_0147 0.41 +0.7 148,304 + Synpcc7942_0147 0.44 +0.4 148,312 - Synpcc7942_0147 0.46 +1.8 148,312 - Synpcc7942_0147 0.46 -0.2 148,317 + Synpcc7942_0147 0.47 +1.6 148,317 + Synpcc7942_0147 0.47 +0.4 148,376 - Synpcc7942_0147 0.65 +0.6 148,381 - Synpcc7942_0147 0.67 -0.4 148,393 - Synpcc7942_0147 0.70 +1.8 148,394 - Synpcc7942_0147 0.71 +1.3 148,408 - Synpcc7942_0147 0.75 +0.7 148,415 + Synpcc7942_0147 0.77 -0.3 148,427 - Synpcc7942_0147 0.80 +0.1 148,439 + Synpcc7942_0147 0.84 +0.4 148,466 + +0.7 148,505 - +0.3 148,519 + +1.0 148,522 - -1.2 148,522 - +0.3 148,524 + +0.9 148,532 - +1.5 148,569 - +1.0 148,570 - -0.5 148,592 + +1.4 148,596 - +0.4 148,607 - +0.7 148,625 + +1.0 148,636 + +1.1 149,657 - Synpcc7942_0148 0.65 -1.1 149,718 + Synpcc7942_0148 0.69 -0.6 150,185 - -0.1 150,191 - -0.2 150,214 + +0.5 150,224 - -0.2 150,241 + -0.0 150,258 - Synpcc7942_0149 0.13 -0.4 150,265 + Synpcc7942_0149 0.14 -0.3 150,275 - Synpcc7942_0149 0.16 +0.7 150,330 + Synpcc7942_0149 0.26 +0.6 150,338 - Synpcc7942_0149 0.27 +1.6 150,341 + Synpcc7942_0149 0.28 -1.1 150,341 + Synpcc7942_0149 0.28 +0.8 150,341 + Synpcc7942_0149 0.28 +1.6 150,341 + Synpcc7942_0149 0.28 -0.5 150,341 + Synpcc7942_0149 0.28 +0.3 150,341 + Synpcc7942_0149 0.28 -0.4 150,349 - Synpcc7942_0149 0.29 +0.3 150,349 - Synpcc7942_0149 0.29 +0.2 150,349 - Synpcc7942_0149 0.29 +0.5 150,349 - Synpcc7942_0149 0.29 +0.3 150,349 - Synpcc7942_0149 0.29 -0.0 150,349 - Synpcc7942_0149 0.29 +0.7 150,349 - Synpcc7942_0149 0.29 -0.2 150,349 - Synpcc7942_0149 0.29 +0.8 150,349 - Synpcc7942_0149 0.29 +0.6 150,349 - Synpcc7942_0149 0.29 -0.4 150,349 - Synpcc7942_0149 0.29 -2.6 150,365 + Synpcc7942_0149 0.32 +1.1 150,378 - Synpcc7942_0149 0.34 +0.2 150,378 - Synpcc7942_0149 0.34 +0.8 150,392 + Synpcc7942_0149 0.37 -1.2 150,435 + Synpcc7942_0149 0.44 +0.7 150,440 + Synpcc7942_0149 0.45 +0.1 150,464 - Synpcc7942_0149 0.50 +0.7 150,465 + Synpcc7942_0149 0.50 +0.3 150,487 + Synpcc7942_0149 0.54 +0.8 150,649 + Synpcc7942_0149 0.83 -0.3 150,664 - Synpcc7942_0149 0.85 +0.8 150,671 - Synpcc7942_0149 0.87 -0.0 150,679 - Synpcc7942_0149 0.88 -0.9 150,699 + +0.7 150,748 + -0.1 150,796 - -1.0 150,951 + Synpcc7942_0150 0.17 -3.7 151,019 - Synpcc7942_0150 0.23 -2.1 151,039 + Synpcc7942_0150 0.25 +0.6 151,045 - Synpcc7942_0150 0.25 -1.8 151,079 + Synpcc7942_0150 0.28 -3.1 151,135 + Synpcc7942_0150 0.33 -1.2 151,165 + Synpcc7942_0150 0.35 -0.9 151,167 + Synpcc7942_0150 0.36 -0.2 151,167 + Synpcc7942_0150 0.36 -0.3 151,167 + Synpcc7942_0150 0.36 -0.5 151,175 - Synpcc7942_0150 0.36 -0.9 151,183 - Synpcc7942_0150 0.37 -1.6 151,185 - Synpcc7942_0150 0.37 -1.6 151,185 - Synpcc7942_0150 0.37 -0.8 151,185 - Synpcc7942_0150 0.37 -0.3
Or see this region's nucleotide sequence