Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0111

Experiment: Flask growth in 60 uE Light-Dark 12:12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask growth in 60 uE Light-Dark 12:12
109,044	+		Synpcc7942_0109	0.33	-1.2
109,045	-		Synpcc7942_0109	0.33	-1.3
109,050	-		Synpcc7942_0109	0.34	-0.0
109,052	-		Synpcc7942_0109	0.35	-0.6
109,059	-		Synpcc7942_0109	0.36	-0.3
109,089	+		Synpcc7942_0109	0.42	-0.8
109,152	-		Synpcc7942_0109	0.54	-0.7
109,158	-		Synpcc7942_0109	0.55	-1.2
109,227	-				-1.2
109,227	-		Synpcc7942_0109	0.69	-1.0
109,295	+		Synpcc7942_0109	0.82	-0.5
109,303	-		Synpcc7942_0109	0.84	+2.3
109,314	+		Synpcc7942_0109	0.86	-0.6
109,359	+				-0.2
109,362	+				-1.3
109,370	-				-0.0
109,418	-				-1.2
109,431	+				-3.6
109,436	-				-0.4
109,466	+		Synpcc7942_0110	0.14	-2.0
109,477	+		Synpcc7942_0110	0.16	-0.1
109,485	-		Synpcc7942_0110	0.17	-2.1
109,498	+		Synpcc7942_0110	0.19	-0.2
109,498	+		Synpcc7942_0110	0.19	-1.1
109,498	+		Synpcc7942_0110	0.19	+0.4
109,498	+		Synpcc7942_0110	0.19	-2.1
109,498	+		Synpcc7942_0110	0.19	-1.8
109,498	+		Synpcc7942_0110	0.19	-0.2
109,498	+		Synpcc7942_0110	0.19	-0.7
109,498	+		Synpcc7942_0110	0.19	+0.5
109,498	+		Synpcc7942_0110	0.19	-0.4
109,498	+		Synpcc7942_0110	0.19	-1.2
109,506	-		Synpcc7942_0110	0.21	-1.0
109,506	-		Synpcc7942_0110	0.21	-0.6
109,506	-		Synpcc7942_0110	0.21	-0.2
109,506	-		Synpcc7942_0110	0.21	-1.3
109,506	-		Synpcc7942_0110	0.21	-0.1
109,506	-		Synpcc7942_0110	0.21	-1.2
109,506	-		Synpcc7942_0110	0.21	-1.9
109,506	-		Synpcc7942_0110	0.21	-1.3
109,506	-		Synpcc7942_0110	0.21	-2.6
109,506	-		Synpcc7942_0110	0.21	-1.3
109,552	-		Synpcc7942_0110	0.29	-1.5
109,556	-		Synpcc7942_0110	0.30	-0.1
109,606	-		Synpcc7942_0110	0.39	-0.4
109,606	-		Synpcc7942_0110	0.39	-0.5
109,634	+		Synpcc7942_0110	0.44	+1.1
109,648	+		Synpcc7942_0110	0.46	-1.0
109,648	+		Synpcc7942_0110	0.46	-2.9
109,648	+		Synpcc7942_0110	0.46	-0.0
109,666	-		Synpcc7942_0110	0.49	-1.3
109,666	-		Synpcc7942_0110	0.49	-2.5
109,680	-		Synpcc7942_0110	0.52	-1.2
109,691	-		Synpcc7942_0110	0.54	-0.7
109,710	-		Synpcc7942_0110	0.57	-1.3
109,710	-		Synpcc7942_0110	0.57	-0.3
109,735	+		Synpcc7942_0110	0.62	-0.4
109,764	+		Synpcc7942_0110	0.67	-0.6
109,772	-		Synpcc7942_0110	0.68	-0.7
109,790	+				+1.7
109,791	-		Synpcc7942_0110	0.72	-0.3
109,810	+		Synpcc7942_0110	0.75	-0.4
109,812	-		Synpcc7942_0110	0.76	-0.4
109,817	+		Synpcc7942_0110	0.77	-0.8
109,817	+		Synpcc7942_0110	0.77	-1.3
109,825	-		Synpcc7942_0110	0.78	-0.2
109,854	+		Synpcc7942_0110	0.83	-0.7
109,856	-		Synpcc7942_0110	0.84	-0.4
109,857	-		Synpcc7942_0110	0.84	-1.3
109,867	-		Synpcc7942_0110	0.85	-1.4
109,910	+				-0.2
109,917	-				-1.6
109,931	-				-1.0
109,931	-				-0.8
109,936	+				-1.9
109,945	+				-0.4
109,963	+				+0.3
109,972	-				+1.3
110,038	+				-0.4
110,046	-				-0.2
110,046	-				-0.9
110,046	-				-0.8
110,048	-				-1.3
110,067	-				-1.1
110,067	-				-1.7
110,120	+				-0.4
110,127	+				-0.8
110,139	+				-1.4
110,189	+	dnaK	Synpcc7942_0111	0.11	-1.0
110,189	+	dnaK	Synpcc7942_0111	0.11	-1.4
110,190	+	dnaK	Synpcc7942_0111	0.11	-0.5
110,198	-	dnaK	Synpcc7942_0111	0.12	-1.2
110,206	-	dnaK	Synpcc7942_0111	0.12	-0.9
110,218	-	dnaK	Synpcc7942_0111	0.13	-1.0
110,235	-	dnaK	Synpcc7942_0111	0.14	-0.4
110,255	-	dnaK	Synpcc7942_0111	0.15	-0.5
110,312	+	dnaK	Synpcc7942_0111	0.19	-0.7
110,313	+	dnaK	Synpcc7942_0111	0.19	-0.3
110,321	-	dnaK	Synpcc7942_0111	0.19	-3.5
110,321	-	dnaK	Synpcc7942_0111	0.19	-0.1
110,321	-	dnaK	Synpcc7942_0111	0.19	-0.9
110,356	-	dnaK	Synpcc7942_0111	0.22	-0.2
110,366	-	dnaK	Synpcc7942_0111	0.22	-1.4
110,371	-	dnaK	Synpcc7942_0111	0.22	-0.4
110,415	+	dnaK	Synpcc7942_0111	0.25	-0.9
110,416	-	dnaK	Synpcc7942_0111	0.25	-1.0
110,423	-	dnaK	Synpcc7942_0111	0.26	-0.7
110,439	-	dnaK	Synpcc7942_0111	0.27	-1.4
110,450	+	dnaK	Synpcc7942_0111	0.27	-0.9
110,450	+	dnaK	Synpcc7942_0111	0.27	-0.6
110,450	+	dnaK	Synpcc7942_0111	0.27	-0.3
110,450	+	dnaK	Synpcc7942_0111	0.27	-2.7
110,450	+	dnaK	Synpcc7942_0111	0.27	-1.5
110,450	+	dnaK	Synpcc7942_0111	0.27	-1.4
110,455	+	dnaK	Synpcc7942_0111	0.28	-2.0
110,458	-	dnaK	Synpcc7942_0111	0.28	-0.3
110,458	-	dnaK	Synpcc7942_0111	0.28	-1.2
110,458	-	dnaK	Synpcc7942_0111	0.28	-2.1
110,458	-	dnaK	Synpcc7942_0111	0.28	-0.2
110,461	-	dnaK	Synpcc7942_0111	0.28	-0.7
110,463	-	dnaK	Synpcc7942_0111	0.28	-0.6
110,504	+	dnaK	Synpcc7942_0111	0.31	-1.1
110,509	+	dnaK	Synpcc7942_0111	0.31	-0.5
110,509	+	dnaK	Synpcc7942_0111	0.31	-1.2
110,517	-	dnaK	Synpcc7942_0111	0.32	+1.0
110,517	-	dnaK	Synpcc7942_0111	0.32	-0.0
110,527	-	dnaK	Synpcc7942_0111	0.32	+0.3
110,540	-	dnaK	Synpcc7942_0111	0.33	-2.3
110,594	-	dnaK	Synpcc7942_0111	0.36	-0.6
110,599	-	dnaK	Synpcc7942_0111	0.37	-0.6
110,618	+	dnaK	Synpcc7942_0111	0.38	-0.5
110,698	+	dnaK	Synpcc7942_0111	0.43	-3.2
110,698	+	dnaK	Synpcc7942_0111	0.43	-0.8
110,747	+	dnaK	Synpcc7942_0111	0.46	-0.0
110,775	-	dnaK	Synpcc7942_0111	0.48	-2.5
110,785	-	dnaK	Synpcc7942_0111	0.48	-1.6
110,789	+	dnaK	Synpcc7942_0111	0.49	-0.8
110,802	+	dnaK	Synpcc7942_0111	0.49	-1.1
110,822	-	dnaK	Synpcc7942_0111	0.51	-0.1
110,832	-	dnaK	Synpcc7942_0111	0.51	-1.1
110,843	-	dnaK	Synpcc7942_0111	0.52	-0.3
110,843	-	dnaK	Synpcc7942_0111	0.52	-0.1
110,843	-	dnaK	Synpcc7942_0111	0.52	-1.6
110,843	-	dnaK	Synpcc7942_0111	0.52	-0.3
110,846	+	dnaK	Synpcc7942_0111	0.52	-3.4
110,873	+	dnaK	Synpcc7942_0111	0.54	-0.6
110,880	+	dnaK	Synpcc7942_0111	0.54	-0.8
110,888	-	dnaK	Synpcc7942_0111	0.55	+1.8
110,888	-	dnaK	Synpcc7942_0111	0.55	-0.2
111,119	-	dnaK	Synpcc7942_0111	0.69	-1.5
111,124	+	dnaK	Synpcc7942_0111	0.70	-1.4
111,191	+	dnaK	Synpcc7942_0111	0.74	-0.9
111,211	-	dnaK	Synpcc7942_0111	0.75	-0.4
111,279	+	dnaK	Synpcc7942_0111	0.79	-0.2
111,279	+	dnaK	Synpcc7942_0111	0.79	-0.4
111,279	+	dnaK	Synpcc7942_0111	0.79	-1.3
111,279	+	dnaK	Synpcc7942_0111	0.79	-0.5
111,287	-	dnaK	Synpcc7942_0111	0.80	-1.7
111,292	+	dnaK	Synpcc7942_0111	0.80	-1.2
111,292	-	dnaK	Synpcc7942_0111	0.80	-2.1
111,313	-	dnaK	Synpcc7942_0111	0.82	-4.3
111,320	+	dnaK	Synpcc7942_0111	0.82	-1.3
111,378	-	dnaK	Synpcc7942_0111	0.86	-1.5
111,399	+	dnaK	Synpcc7942_0111	0.87	-0.6
111,405	+	dnaK	Synpcc7942_0111	0.87	-0.6
111,470	+				-1.5
111,487	+				-1.8
111,497	-				-0.5
111,506	+				-0.0
111,511	+				-0.8
111,511	+				-1.1
111,519	-				+0.2
111,519	-				-1.5
111,519	-				-0.2
111,541	+				-0.0
111,578	+				+0.2
111,600	+				+0.2
111,602	+				-0.8
111,609	-				-1.8
111,609	-				+0.3
111,612	+				-0.3
111,620	-				+0.2
111,646	-				-0.6
111,648	+				-2.2
111,660	+				+0.6
111,660	+				-0.5
111,668	-				-0.8
111,714	+				-1.3
111,714	+				+0.2
111,722	-				+0.4
111,722	-				-0.6
111,728	-				-1.4
111,728	-				+0.1
111,746	-				-1.4
111,746	-				-0.2
111,760	+				-1.6
111,787	+				-0.7
111,787	+				+0.4
111,787	+				-0.1
111,787	+				+0.7
111,795	-				+0.1
111,795	-				-0.2
111,795	-				-0.8
111,795	-				+0.4
111,856	-	phr	Synpcc7942_0112	0.12	+0.7
111,858	+	phr	Synpcc7942_0112	0.12	+0.8
111,867	+	phr	Synpcc7942_0112	0.12	-0.8
111,877	+	phr	Synpcc7942_0112	0.13	-0.0
111,885	-	phr	Synpcc7942_0112	0.14	+0.4
111,904	+	phr	Synpcc7942_0112	0.15	-1.3
111,905	+	phr	Synpcc7942_0112	0.15	+0.3
111,963	-	phr	Synpcc7942_0112	0.19	+0.7
111,987	+	phr	Synpcc7942_0112	0.21	+0.5
112,016	+	phr	Synpcc7942_0112	0.23	-2.0
112,029	-	phr	Synpcc7942_0112	0.24	-1.3
112,029	-	phr	Synpcc7942_0112	0.24	-1.0
112,034	-	phr	Synpcc7942_0112	0.24	+0.3
112,048	+	phr	Synpcc7942_0112	0.25	+1.3
112,048	+	phr	Synpcc7942_0112	0.25	+1.1
112,058	+	phr	Synpcc7942_0112	0.26	-2.2
112,058	+	phr	Synpcc7942_0112	0.26	-1.8
112,066	-	phr	Synpcc7942_0112	0.26	-0.5
112,066	-	phr	Synpcc7942_0112	0.26	-0.4
112,068	+	phr	Synpcc7942_0112	0.26	-0.4
112,068	+	phr	Synpcc7942_0112	0.26	+0.1
112,081	+	phr	Synpcc7942_0112	0.27	-0.5
112,081	+	phr	Synpcc7942_0112	0.27	-0.4
112,081	+	phr	Synpcc7942_0112	0.27	+1.0
112,081	+	phr	Synpcc7942_0112	0.27	-1.3
112,081	+	phr	Synpcc7942_0112	0.27	-3.5
112,081	+	phr	Synpcc7942_0112	0.27	-0.1
112,081	+	phr	Synpcc7942_0112	0.27	+0.1
112,089	-	phr	Synpcc7942_0112	0.28	-0.5
112,108	-	phr	Synpcc7942_0112	0.29	-0.8
112,117	+	phr	Synpcc7942_0112	0.30	+0.5
112,156	+	phr	Synpcc7942_0112	0.32	+1.7
112,157	+	phr	Synpcc7942_0112	0.32	-1.1
112,162	+	phr	Synpcc7942_0112	0.33	+1.8
112,170	-	phr	Synpcc7942_0112	0.33	+0.7
112,201	-	phr	Synpcc7942_0112	0.35	-0.5
112,217	-	phr	Synpcc7942_0112	0.36	-0.7
112,233	+	phr	Synpcc7942_0112	0.38	+0.8
112,260	+	phr	Synpcc7942_0112	0.39	-0.6
112,260	+	phr	Synpcc7942_0112	0.39	-0.2
112,268	-	phr	Synpcc7942_0112	0.40	-2.1
112,268	-	phr	Synpcc7942_0112	0.40	-0.6
112,274	+	phr	Synpcc7942_0112	0.40	+0.5
112,275	+	phr	Synpcc7942_0112	0.40	-0.4
112,278	-	phr	Synpcc7942_0112	0.41	+0.2
112,289	-	phr	Synpcc7942_0112	0.41	+0.4
112,317	-	phr	Synpcc7942_0112	0.43	-0.9
112,443	+	phr	Synpcc7942_0112	0.52	-2.3
112,451	-	phr	Synpcc7942_0112	0.53	+1.2
112,455	-	phr	Synpcc7942_0112	0.53	+0.8
112,456	-	phr	Synpcc7942_0112	0.53	+0.7
112,470	+	phr	Synpcc7942_0112	0.54	+0.3
112,470	+	phr	Synpcc7942_0112	0.54	-0.4
112,470	+	phr	Synpcc7942_0112	0.54	-0.3
112,473	-	phr	Synpcc7942_0112	0.54	-1.7
112,475	+	phr	Synpcc7942_0112	0.54	-1.3
112,481	+	phr	Synpcc7942_0112	0.55	+0.2
112,489	-	phr	Synpcc7942_0112	0.55	+0.8
112,494	+	phr	Synpcc7942_0112	0.56	+1.9
112,502	+	phr	Synpcc7942_0112	0.56	-1.5
112,512	+	phr	Synpcc7942_0112	0.57	+0.3
112,556	-	phr	Synpcc7942_0112	0.60	-0.2
112,575	+	phr	Synpcc7942_0112	0.61	-0.3
112,600	-	phr	Synpcc7942_0112	0.63	+0.9