Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6140 and Pf6N2E2_6141 are separated by 166 nucleotides Pf6N2E2_6141 and Pf6N2E2_4841 are separated by 44 nucleotides Pf6N2E2_4841 and Pf6N2E2_4842 overlap by 11 nucleotides Pf6N2E2_4842 and Pf6N2E2_4843 are separated by 8 nucleotides
Pf6N2E2_6140 - Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA, at 5,596,527 to 5,599,419
_6140
Pf6N2E2_6141 - 5S RNA, at 5,599,586 to 5,599,705
_6141
Pf6N2E2_4841 - Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15), at 5,599,750 to 5,600,793
_4841
Pf6N2E2_4842 - Pantothenate kinase type III, CoaX-like (EC 2.7.1.33), at 5,600,783 to 5,601,532
_4842
Pf6N2E2_4843 - FIG00956941: hypothetical protein, at 5,601,541 to 5,601,996
_4843
Position (kb) 5599
5600
5601 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5599.418 kb on + strand at 5599.418 kb on + strand at 5599.418 kb on + strand at 5599.418 kb on + strand at 5599.418 kb on + strand at 5599.418 kb on + strand at 5599.418 kb on + strand at 5599.438 kb on + strand at 5599.438 kb on + strand at 5599.438 kb on + strand at 5599.737 kb on + strand at 5599.737 kb on + strand at 5599.779 kb on + strand at 5599.779 kb on + strand at 5599.780 kb on - strand at 5599.780 kb on - strand at 5599.780 kb on - strand at 5599.850 kb on + strand at 5599.850 kb on + strand at 5599.917 kb on + strand, within Pf6N2E2_4841 at 5599.917 kb on + strand, within Pf6N2E2_4841 at 5599.917 kb on + strand, within Pf6N2E2_4841 at 5599.917 kb on + strand, within Pf6N2E2_4841 at 5599.958 kb on + strand, within Pf6N2E2_4841 at 5599.958 kb on + strand, within Pf6N2E2_4841 at 5599.958 kb on + strand, within Pf6N2E2_4841 at 5599.958 kb on + strand, within Pf6N2E2_4841 at 5599.958 kb on + strand, within Pf6N2E2_4841 at 5599.974 kb on + strand, within Pf6N2E2_4841 at 5599.986 kb on + strand, within Pf6N2E2_4841 at 5599.993 kb on + strand, within Pf6N2E2_4841 at 5600.004 kb on + strand, within Pf6N2E2_4841 at 5601.540 kb on + strand at 5601.540 kb on + strand at 5601.583 kb on + strand at 5601.583 kb on + strand at 5601.583 kb on + strand at 5601.583 kb on + strand at 5601.583 kb on + strand at 5601.583 kb on + strand at 5601.584 kb on - strand at 5601.584 kb on - strand at 5601.586 kb on + strand at 5601.586 kb on + strand at 5601.586 kb on + strand at 5601.586 kb on + strand at 5601.586 kb on + strand at 5601.586 kb on + strand at 5601.587 kb on - strand, within Pf6N2E2_4843 at 5601.587 kb on - strand, within Pf6N2E2_4843 at 5601.646 kb on + strand, within Pf6N2E2_4843 at 5601.646 kb on + strand, within Pf6N2E2_4843 at 5601.718 kb on - strand, within Pf6N2E2_4843 at 5601.748 kb on + strand, within Pf6N2E2_4843 at 5601.748 kb on + strand, within Pf6N2E2_4843 at 5601.749 kb on - strand, within Pf6N2E2_4843
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 5,599,418 + -0.0 5,599,418 + -0.5 5,599,418 + -0.6 5,599,418 + +0.6 5,599,418 + -1.4 5,599,418 + -2.1 5,599,418 + -2.1 5,599,438 + -0.9 5,599,438 + -0.4 5,599,438 + -0.5 5,599,737 + +0.2 5,599,737 + -0.5 5,599,779 + +0.3 5,599,779 + -0.4 5,599,780 - -0.2 5,599,780 - +0.8 5,599,780 - +2.5 5,599,850 + +0.6 5,599,850 + -1.1 5,599,917 + Pf6N2E2_4841 0.16 +0.0 5,599,917 + Pf6N2E2_4841 0.16 -0.7 5,599,917 + Pf6N2E2_4841 0.16 +0.1 5,599,917 + Pf6N2E2_4841 0.16 -0.5 5,599,958 + Pf6N2E2_4841 0.20 -1.0 5,599,958 + Pf6N2E2_4841 0.20 -0.1 5,599,958 + Pf6N2E2_4841 0.20 -0.7 5,599,958 + Pf6N2E2_4841 0.20 -0.4 5,599,958 + Pf6N2E2_4841 0.20 -0.8 5,599,974 + Pf6N2E2_4841 0.21 -0.5 5,599,986 + Pf6N2E2_4841 0.23 -2.2 5,599,993 + Pf6N2E2_4841 0.23 +0.2 5,600,004 + Pf6N2E2_4841 0.24 -1.1 5,601,540 + +1.0 5,601,540 + +0.3 5,601,583 + +0.6 5,601,583 + +0.6 5,601,583 + +1.1 5,601,583 + -0.7 5,601,583 + +1.2 5,601,583 + +0.5 5,601,584 - -0.9 5,601,584 - +0.3 5,601,586 + +0.0 5,601,586 + +0.0 5,601,586 + +1.0 5,601,586 + +0.2 5,601,586 + +0.7 5,601,586 + -0.1 5,601,587 - Pf6N2E2_4843 0.10 +0.6 5,601,587 - Pf6N2E2_4843 0.10 +1.3 5,601,646 + Pf6N2E2_4843 0.23 -0.1 5,601,646 + Pf6N2E2_4843 0.23 +0.8 5,601,718 - Pf6N2E2_4843 0.39 +0.5 5,601,748 + Pf6N2E2_4843 0.45 +0.5 5,601,748 + Pf6N2E2_4843 0.45 +0.8 5,601,749 - Pf6N2E2_4843 0.46 +0.9
Or see this region's nucleotide sequence