Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3076 and Pf6N2E2_3077 are separated by 178 nucleotides Pf6N2E2_3077 and Pf6N2E2_3078 are separated by 32 nucleotides
Pf6N2E2_3076 - Methyl-accepting chemotaxis protein, at 3,564,274 to 3,565,629
_3076
Pf6N2E2_3077 - FIG138056: a glutathione-dependent thiol reductase, at 3,565,808 to 3,566,170
_3077
Pf6N2E2_3078 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117), at 3,566,203 to 3,567,237
_3078
Position (kb)
3565
3566
3567 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3564.821 kb on + strand, within Pf6N2E2_3076 at 3564.821 kb on + strand, within Pf6N2E2_3076 at 3564.821 kb on + strand, within Pf6N2E2_3076 at 3564.872 kb on + strand, within Pf6N2E2_3076 at 3564.910 kb on + strand, within Pf6N2E2_3076 at 3564.911 kb on - strand, within Pf6N2E2_3076 at 3564.911 kb on - strand, within Pf6N2E2_3076 at 3564.911 kb on - strand, within Pf6N2E2_3076 at 3564.911 kb on - strand, within Pf6N2E2_3076 at 3565.029 kb on + strand, within Pf6N2E2_3076 at 3565.029 kb on + strand, within Pf6N2E2_3076 at 3565.383 kb on + strand, within Pf6N2E2_3076 at 3565.383 kb on + strand, within Pf6N2E2_3076 at 3565.383 kb on + strand, within Pf6N2E2_3076 at 3565.384 kb on - strand, within Pf6N2E2_3076 at 3565.384 kb on - strand, within Pf6N2E2_3076 at 3565.435 kb on + strand, within Pf6N2E2_3076 at 3565.435 kb on + strand, within Pf6N2E2_3076 at 3565.435 kb on + strand, within Pf6N2E2_3076 at 3565.436 kb on - strand, within Pf6N2E2_3076 at 3565.436 kb on - strand, within Pf6N2E2_3076 at 3565.436 kb on - strand, within Pf6N2E2_3076 at 3565.436 kb on - strand, within Pf6N2E2_3076 at 3565.436 kb on - strand, within Pf6N2E2_3076 at 3565.436 kb on - strand, within Pf6N2E2_3076 at 3565.436 kb on - strand, within Pf6N2E2_3076 at 3565.437 kb on + strand, within Pf6N2E2_3076 at 3565.438 kb on - strand, within Pf6N2E2_3076 at 3565.666 kb on - strand at 3565.666 kb on - strand at 3565.830 kb on + strand at 3565.899 kb on + strand, within Pf6N2E2_3077 at 3565.899 kb on + strand, within Pf6N2E2_3077 at 3565.919 kb on + strand, within Pf6N2E2_3077 at 3566.150 kb on + strand at 3566.150 kb on + strand at 3566.150 kb on + strand at 3566.150 kb on + strand at 3566.150 kb on + strand at 3566.150 kb on + strand at 3566.150 kb on + strand at 3566.150 kb on + strand at 3566.150 kb on + strand at 3566.150 kb on + strand at 3566.150 kb on + strand at 3566.168 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 3,564,821 + Pf6N2E2_3076 0.40 -0.4 3,564,821 + Pf6N2E2_3076 0.40 -0.1 3,564,821 + Pf6N2E2_3076 0.40 +0.1 3,564,872 + Pf6N2E2_3076 0.44 -0.4 3,564,910 + Pf6N2E2_3076 0.47 +1.8 3,564,911 - Pf6N2E2_3076 0.47 -0.1 3,564,911 - Pf6N2E2_3076 0.47 -0.4 3,564,911 - Pf6N2E2_3076 0.47 +0.3 3,564,911 - Pf6N2E2_3076 0.47 +0.6 3,565,029 + Pf6N2E2_3076 0.56 +0.3 3,565,029 + Pf6N2E2_3076 0.56 +0.0 3,565,383 + Pf6N2E2_3076 0.82 -1.7 3,565,383 + Pf6N2E2_3076 0.82 +0.9 3,565,383 + Pf6N2E2_3076 0.82 +0.1 3,565,384 - Pf6N2E2_3076 0.82 +0.4 3,565,384 - Pf6N2E2_3076 0.82 -0.4 3,565,435 + Pf6N2E2_3076 0.86 -0.4 3,565,435 + Pf6N2E2_3076 0.86 -2.2 3,565,435 + Pf6N2E2_3076 0.86 -0.0 3,565,436 - Pf6N2E2_3076 0.86 +0.6 3,565,436 - Pf6N2E2_3076 0.86 +0.7 3,565,436 - Pf6N2E2_3076 0.86 -1.2 3,565,436 - Pf6N2E2_3076 0.86 -0.2 3,565,436 - Pf6N2E2_3076 0.86 -1.2 3,565,436 - Pf6N2E2_3076 0.86 -1.0 3,565,436 - Pf6N2E2_3076 0.86 -0.5 3,565,437 + Pf6N2E2_3076 0.86 +0.2 3,565,438 - Pf6N2E2_3076 0.86 -0.2 3,565,666 - +0.4 3,565,666 - +0.5 3,565,830 + -0.4 3,565,899 + Pf6N2E2_3077 0.25 -0.7 3,565,899 + Pf6N2E2_3077 0.25 -0.6 3,565,919 + Pf6N2E2_3077 0.31 -0.2 3,566,150 + +0.2 3,566,150 + +0.4 3,566,150 + +0.2 3,566,150 + -2.7 3,566,150 + +0.7 3,566,150 + -1.3 3,566,150 + -1.9 3,566,150 + -3.4 3,566,150 + -0.4 3,566,150 + -2.0 3,566,150 + -0.9 3,566,168 + +0.1
Or see this region's nucleotide sequence