Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3037

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3035 and Pf6N2E2_3036 are separated by 142 nucleotidesPf6N2E2_3036 and Pf6N2E2_3037 are separated by 489 nucleotidesPf6N2E2_3037 and Pf6N2E2_3038 are separated by 106 nucleotides Pf6N2E2_3035 - DNA mismatch repair protein MutS, at 3,518,144 to 3,520,723 _3035 Pf6N2E2_3036 - 4Fe-4S ferredoxin, iron-sulfur binding, at 3,520,866 to 3,521,189 _3036 Pf6N2E2_3037 - RNA polymerase sigma factor RpoS, at 3,521,679 to 3,522,686 _3037 Pf6N2E2_3038 - Lipoprotein NlpD, at 3,522,793 to 3,522,993 _3038 Position (kb) 3521 3522 3523Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3520.695 kb on + strandat 3520.700 kb on + strandat 3520.702 kb on + strandat 3520.702 kb on + strandat 3520.702 kb on + strandat 3520.702 kb on + strandat 3520.702 kb on + strandat 3520.702 kb on + strandat 3520.702 kb on + strandat 3520.702 kb on + strandat 3520.702 kb on + strandat 3520.702 kb on + strandat 3520.703 kb on - strandat 3520.703 kb on - strandat 3520.721 kb on + strandat 3520.721 kb on + strandat 3520.721 kb on + strandat 3520.721 kb on + strandat 3520.721 kb on + strandat 3520.721 kb on + strandat 3520.721 kb on + strandat 3520.721 kb on + strandat 3520.721 kb on + strandat 3520.721 kb on + strandat 3520.722 kb on - strandat 3520.722 kb on - strandat 3520.726 kb on + strandat 3520.726 kb on + strandat 3520.726 kb on + strandat 3520.726 kb on + strandat 3520.776 kb on + strandat 3520.779 kb on + strandat 3520.779 kb on + strandat 3520.779 kb on + strandat 3521.399 kb on + strandat 3521.400 kb on - strandat 3521.400 kb on - strandat 3521.400 kb on - strandat 3521.402 kb on + strandat 3521.402 kb on + strandat 3521.402 kb on + strandat 3521.403 kb on - strandat 3521.403 kb on - strandat 3521.405 kb on + strandat 3521.405 kb on + strandat 3521.436 kb on - strandat 3521.436 kb on - strandat 3521.493 kb on + strandat 3521.517 kb on + strandat 3521.517 kb on + strandat 3521.518 kb on - strandat 3521.518 kb on - strandat 3521.518 kb on - strandat 3521.518 kb on - strandat 3521.519 kb on + strandat 3521.555 kb on - strandat 3521.564 kb on + strandat 3521.576 kb on + strandat 3521.576 kb on + strandat 3521.576 kb on + strandat 3521.577 kb on - strandat 3521.577 kb on - strandat 3521.577 kb on - strandat 3521.589 kb on + strandat 3521.590 kb on - strandat 3521.596 kb on - strandat 3521.596 kb on - strandat 3521.796 kb on + strand, within Pf6N2E2_3037at 3521.796 kb on + strand, within Pf6N2E2_3037at 3521.796 kb on + strand, within Pf6N2E2_3037at 3521.797 kb on - strand, within Pf6N2E2_3037at 3521.870 kb on + strand, within Pf6N2E2_3037at 3522.004 kb on - strand, within Pf6N2E2_3037at 3522.051 kb on + strand, within Pf6N2E2_3037at 3522.136 kb on + strand, within Pf6N2E2_3037at 3522.137 kb on - strand, within Pf6N2E2_3037at 3522.235 kb on + strand, within Pf6N2E2_3037at 3522.236 kb on - strand, within Pf6N2E2_3037at 3522.236 kb on - strand, within Pf6N2E2_3037at 3522.343 kb on + strand, within Pf6N2E2_3037at 3522.517 kb on + strand, within Pf6N2E2_3037at 3522.517 kb on + strand, within Pf6N2E2_3037at 3522.526 kb on + strand, within Pf6N2E2_3037at 3522.526 kb on + strand, within Pf6N2E2_3037at 3522.526 kb on + strand, within Pf6N2E2_3037at 3522.526 kb on + strand, within Pf6N2E2_3037at 3522.526 kb on + strand, within Pf6N2E2_3037at 3522.526 kb on + strand, within Pf6N2E2_3037at 3522.527 kb on - strand, within Pf6N2E2_3037at 3522.527 kb on - strand, within Pf6N2E2_3037at 3522.527 kb on - strand, within Pf6N2E2_3037at 3522.527 kb on - strand, within Pf6N2E2_3037at 3522.530 kb on + strand, within Pf6N2E2_3037at 3522.530 kb on + strand, within Pf6N2E2_3037at 3522.530 kb on + strand, within Pf6N2E2_3037at 3522.530 kb on + strand, within Pf6N2E2_3037at 3522.530 kb on + strand, within Pf6N2E2_3037at 3522.530 kb on + strand, within Pf6N2E2_3037at 3522.530 kb on + strand, within Pf6N2E2_3037at 3522.530 kb on + strand, within Pf6N2E2_3037at 3522.530 kb on + strand, within Pf6N2E2_3037at 3522.530 kb on + strand, within Pf6N2E2_3037at 3522.530 kb on + strand, within Pf6N2E2_3037at 3522.530 kb on + strand, within Pf6N2E2_3037at 3522.530 kb on + strand, within Pf6N2E2_3037at 3522.530 kb on + strand, within Pf6N2E2_3037at 3522.530 kb on + strand, within Pf6N2E2_3037at 3522.530 kb on + strand, within Pf6N2E2_3037at 3522.530 kb on + strand, within Pf6N2E2_3037at 3522.530 kb on + strand, within Pf6N2E2_3037at 3522.531 kb on - strand, within Pf6N2E2_3037at 3522.531 kb on - strand, within Pf6N2E2_3037at 3522.531 kb on - strand, within Pf6N2E2_3037at 3522.531 kb on - strand, within Pf6N2E2_3037at 3522.531 kb on - strand, within Pf6N2E2_3037at 3522.531 kb on - strand, within Pf6N2E2_3037at 3522.531 kb on - strand, within Pf6N2E2_3037at 3522.531 kb on - strand, within Pf6N2E2_3037at 3522.531 kb on - strand, within Pf6N2E2_3037at 3522.531 kb on - strand, within Pf6N2E2_3037at 3522.531 kb on - strand, within Pf6N2E2_3037at 3522.531 kb on - strand, within Pf6N2E2_3037at 3522.539 kb on + strand, within Pf6N2E2_3037at 3522.539 kb on + strand, within Pf6N2E2_3037at 3522.614 kb on + strandat 3522.690 kb on + strandat 3522.690 kb on + strandat 3522.690 kb on + strandat 3522.691 kb on - strandat 3522.692 kb on + strandat 3522.692 kb on + strandat 3522.692 kb on + strandat 3522.692 kb on + strandat 3522.692 kb on + strandat 3522.693 kb on - strandat 3522.766 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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3,520,695 + +0.3
3,520,700 + +0.1
3,520,702 + -0.7
3,520,702 + -0.0
3,520,702 + +0.5
3,520,702 + -1.0
3,520,702 + +0.5
3,520,702 + -1.8
3,520,702 + -2.1
3,520,702 + -0.7
3,520,702 + +0.4
3,520,702 + -0.0
3,520,703 - +1.9
3,520,703 - +2.0
3,520,721 + -2.4
3,520,721 + -0.8
3,520,721 + +0.4
3,520,721 + -0.1
3,520,721 + -0.4
3,520,721 + -0.7
3,520,721 + +0.1
3,520,721 + -1.6
3,520,721 + -1.8
3,520,721 + +0.4
3,520,722 - -1.1
3,520,722 - -0.1
3,520,726 + -0.1
3,520,726 + -0.4
3,520,726 + -0.7
3,520,726 + +1.1
3,520,776 + -0.0
3,520,779 + -0.1
3,520,779 + +0.2
3,520,779 + +0.9
3,521,399 + -0.1
3,521,400 - -0.3
3,521,400 - -0.5
3,521,400 - -0.2
3,521,402 + -0.8
3,521,402 + +0.0
3,521,402 + -0.2
3,521,403 - -0.8
3,521,403 - -0.9
3,521,405 + +0.5
3,521,405 + -0.6
3,521,436 - +0.1
3,521,436 - -0.4
3,521,493 + +0.8
3,521,517 + +0.1
3,521,517 + +0.7
3,521,518 - -0.1
3,521,518 - +0.9
3,521,518 - +0.7
3,521,518 - -0.9
3,521,519 + +0.2
3,521,555 - +0.9
3,521,564 + +0.3
3,521,576 + -0.9
3,521,576 + -0.1
3,521,576 + +1.2
3,521,577 - -0.0
3,521,577 - -0.7
3,521,577 - +0.8
3,521,589 + -0.2
3,521,590 - -0.2
3,521,596 - -0.3
3,521,596 - -0.6
3,521,796 + Pf6N2E2_3037 0.12 +1.2
3,521,796 + Pf6N2E2_3037 0.12 -2.6
3,521,796 + Pf6N2E2_3037 0.12 -0.2
3,521,797 - Pf6N2E2_3037 0.12 -2.4
3,521,870 + Pf6N2E2_3037 0.19 -2.7
3,522,004 - Pf6N2E2_3037 0.32 +0.2
3,522,051 + Pf6N2E2_3037 0.37 +0.7
3,522,136 + Pf6N2E2_3037 0.45 -0.8
3,522,137 - Pf6N2E2_3037 0.45 -1.1
3,522,235 + Pf6N2E2_3037 0.55 -1.1
3,522,236 - Pf6N2E2_3037 0.55 +0.2
3,522,236 - Pf6N2E2_3037 0.55 -0.6
3,522,343 + Pf6N2E2_3037 0.66 -0.9
3,522,517 + Pf6N2E2_3037 0.83 -0.8
3,522,517 + Pf6N2E2_3037 0.83 +0.2
3,522,526 + Pf6N2E2_3037 0.84 -0.9
3,522,526 + Pf6N2E2_3037 0.84 -0.1
3,522,526 + Pf6N2E2_3037 0.84 -0.7
3,522,526 + Pf6N2E2_3037 0.84 -0.5
3,522,526 + Pf6N2E2_3037 0.84 +1.8
3,522,526 + Pf6N2E2_3037 0.84 +0.1
3,522,527 - Pf6N2E2_3037 0.84 -0.4
3,522,527 - Pf6N2E2_3037 0.84 -0.8
3,522,527 - Pf6N2E2_3037 0.84 -0.1
3,522,527 - Pf6N2E2_3037 0.84 +1.2
3,522,530 + Pf6N2E2_3037 0.84 -0.5
3,522,530 + Pf6N2E2_3037 0.84 -1.2
3,522,530 + Pf6N2E2_3037 0.84 -1.1
3,522,530 + Pf6N2E2_3037 0.84 -0.3
3,522,530 + Pf6N2E2_3037 0.84 -0.6
3,522,530 + Pf6N2E2_3037 0.84 +0.2
3,522,530 + Pf6N2E2_3037 0.84 -0.6
3,522,530 + Pf6N2E2_3037 0.84 -1.8
3,522,530 + Pf6N2E2_3037 0.84 -0.4
3,522,530 + Pf6N2E2_3037 0.84 -0.6
3,522,530 + Pf6N2E2_3037 0.84 -1.3
3,522,530 + Pf6N2E2_3037 0.84 -0.8
3,522,530 + Pf6N2E2_3037 0.84 +1.5
3,522,530 + Pf6N2E2_3037 0.84 -1.9
3,522,530 + Pf6N2E2_3037 0.84 +0.1
3,522,530 + Pf6N2E2_3037 0.84 -2.3
3,522,530 + Pf6N2E2_3037 0.84 -0.6
3,522,530 + Pf6N2E2_3037 0.84 -1.1
3,522,531 - Pf6N2E2_3037 0.85 -1.2
3,522,531 - Pf6N2E2_3037 0.85 -0.5
3,522,531 - Pf6N2E2_3037 0.85 -0.4
3,522,531 - Pf6N2E2_3037 0.85 +0.0
3,522,531 - Pf6N2E2_3037 0.85 -2.9
3,522,531 - Pf6N2E2_3037 0.85 -1.4
3,522,531 - Pf6N2E2_3037 0.85 -1.7
3,522,531 - Pf6N2E2_3037 0.85 -1.6
3,522,531 - Pf6N2E2_3037 0.85 +0.7
3,522,531 - Pf6N2E2_3037 0.85 -1.2
3,522,531 - Pf6N2E2_3037 0.85 -0.6
3,522,531 - Pf6N2E2_3037 0.85 -0.8
3,522,539 + Pf6N2E2_3037 0.85 -0.2
3,522,539 + Pf6N2E2_3037 0.85 -0.3
3,522,614 + -0.8
3,522,690 + -0.4
3,522,690 + -0.9
3,522,690 + -3.9
3,522,691 - -1.1
3,522,692 + -0.7
3,522,692 + -0.6
3,522,692 + -1.2
3,522,692 + -0.6
3,522,692 + -1.0
3,522,693 - +0.9
3,522,766 - +1.2

Or see this region's nucleotide sequence