Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3035 and Pf6N2E2_3036 are separated by 142 nucleotides Pf6N2E2_3036 and Pf6N2E2_3037 are separated by 489 nucleotides Pf6N2E2_3037 and Pf6N2E2_3038 are separated by 106 nucleotides
Pf6N2E2_3035 - DNA mismatch repair protein MutS, at 3,518,144 to 3,520,723
_3035
Pf6N2E2_3036 - 4Fe-4S ferredoxin, iron-sulfur binding, at 3,520,866 to 3,521,189
_3036
Pf6N2E2_3037 - RNA polymerase sigma factor RpoS, at 3,521,679 to 3,522,686
_3037
Pf6N2E2_3038 - Lipoprotein NlpD, at 3,522,793 to 3,522,993
_3038
Position (kb)
3521
3522
3523 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3520.695 kb on + strand at 3520.700 kb on + strand at 3520.702 kb on + strand at 3520.702 kb on + strand at 3520.702 kb on + strand at 3520.702 kb on + strand at 3520.702 kb on + strand at 3520.702 kb on + strand at 3520.702 kb on + strand at 3520.702 kb on + strand at 3520.702 kb on + strand at 3520.702 kb on + strand at 3520.703 kb on - strand at 3520.703 kb on - strand at 3520.721 kb on + strand at 3520.721 kb on + strand at 3520.721 kb on + strand at 3520.721 kb on + strand at 3520.721 kb on + strand at 3520.721 kb on + strand at 3520.721 kb on + strand at 3520.721 kb on + strand at 3520.721 kb on + strand at 3520.721 kb on + strand at 3520.722 kb on - strand at 3520.722 kb on - strand at 3520.726 kb on + strand at 3520.726 kb on + strand at 3520.726 kb on + strand at 3520.726 kb on + strand at 3520.776 kb on + strand at 3520.779 kb on + strand at 3520.779 kb on + strand at 3520.779 kb on + strand at 3521.399 kb on + strand at 3521.400 kb on - strand at 3521.400 kb on - strand at 3521.400 kb on - strand at 3521.402 kb on + strand at 3521.402 kb on + strand at 3521.402 kb on + strand at 3521.403 kb on - strand at 3521.403 kb on - strand at 3521.405 kb on + strand at 3521.405 kb on + strand at 3521.436 kb on - strand at 3521.436 kb on - strand at 3521.493 kb on + strand at 3521.517 kb on + strand at 3521.517 kb on + strand at 3521.518 kb on - strand at 3521.518 kb on - strand at 3521.518 kb on - strand at 3521.518 kb on - strand at 3521.519 kb on + strand at 3521.555 kb on - strand at 3521.564 kb on + strand at 3521.576 kb on + strand at 3521.576 kb on + strand at 3521.576 kb on + strand at 3521.577 kb on - strand at 3521.577 kb on - strand at 3521.577 kb on - strand at 3521.589 kb on + strand at 3521.590 kb on - strand at 3521.596 kb on - strand at 3521.596 kb on - strand at 3521.796 kb on + strand, within Pf6N2E2_3037 at 3521.796 kb on + strand, within Pf6N2E2_3037 at 3521.796 kb on + strand, within Pf6N2E2_3037 at 3521.797 kb on - strand, within Pf6N2E2_3037 at 3521.870 kb on + strand, within Pf6N2E2_3037 at 3522.004 kb on - strand, within Pf6N2E2_3037 at 3522.051 kb on + strand, within Pf6N2E2_3037 at 3522.136 kb on + strand, within Pf6N2E2_3037 at 3522.137 kb on - strand, within Pf6N2E2_3037 at 3522.235 kb on + strand, within Pf6N2E2_3037 at 3522.236 kb on - strand, within Pf6N2E2_3037 at 3522.236 kb on - strand, within Pf6N2E2_3037 at 3522.343 kb on + strand, within Pf6N2E2_3037 at 3522.517 kb on + strand, within Pf6N2E2_3037 at 3522.517 kb on + strand, within Pf6N2E2_3037 at 3522.526 kb on + strand, within Pf6N2E2_3037 at 3522.526 kb on + strand, within Pf6N2E2_3037 at 3522.526 kb on + strand, within Pf6N2E2_3037 at 3522.526 kb on + strand, within Pf6N2E2_3037 at 3522.526 kb on + strand, within Pf6N2E2_3037 at 3522.526 kb on + strand, within Pf6N2E2_3037 at 3522.527 kb on - strand, within Pf6N2E2_3037 at 3522.527 kb on - strand, within Pf6N2E2_3037 at 3522.527 kb on - strand, within Pf6N2E2_3037 at 3522.527 kb on - strand, within Pf6N2E2_3037 at 3522.530 kb on + strand, within Pf6N2E2_3037 at 3522.530 kb on + strand, within Pf6N2E2_3037 at 3522.530 kb on + strand, within Pf6N2E2_3037 at 3522.530 kb on + strand, within Pf6N2E2_3037 at 3522.530 kb on + strand, within Pf6N2E2_3037 at 3522.530 kb on + strand, within Pf6N2E2_3037 at 3522.530 kb on + strand, within Pf6N2E2_3037 at 3522.530 kb on + strand, within Pf6N2E2_3037 at 3522.530 kb on + strand, within Pf6N2E2_3037 at 3522.530 kb on + strand, within Pf6N2E2_3037 at 3522.530 kb on + strand, within Pf6N2E2_3037 at 3522.530 kb on + strand, within Pf6N2E2_3037 at 3522.530 kb on + strand, within Pf6N2E2_3037 at 3522.530 kb on + strand, within Pf6N2E2_3037 at 3522.530 kb on + strand, within Pf6N2E2_3037 at 3522.530 kb on + strand, within Pf6N2E2_3037 at 3522.530 kb on + strand, within Pf6N2E2_3037 at 3522.530 kb on + strand, within Pf6N2E2_3037 at 3522.531 kb on - strand, within Pf6N2E2_3037 at 3522.531 kb on - strand, within Pf6N2E2_3037 at 3522.531 kb on - strand, within Pf6N2E2_3037 at 3522.531 kb on - strand, within Pf6N2E2_3037 at 3522.531 kb on - strand, within Pf6N2E2_3037 at 3522.531 kb on - strand, within Pf6N2E2_3037 at 3522.531 kb on - strand, within Pf6N2E2_3037 at 3522.531 kb on - strand, within Pf6N2E2_3037 at 3522.531 kb on - strand, within Pf6N2E2_3037 at 3522.531 kb on - strand, within Pf6N2E2_3037 at 3522.531 kb on - strand, within Pf6N2E2_3037 at 3522.531 kb on - strand, within Pf6N2E2_3037 at 3522.539 kb on + strand, within Pf6N2E2_3037 at 3522.539 kb on + strand, within Pf6N2E2_3037 at 3522.614 kb on + strand at 3522.690 kb on + strand at 3522.690 kb on + strand at 3522.690 kb on + strand at 3522.691 kb on - strand at 3522.692 kb on + strand at 3522.692 kb on + strand at 3522.692 kb on + strand at 3522.692 kb on + strand at 3522.692 kb on + strand at 3522.693 kb on - strand at 3522.766 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 3,520,695 + +0.3 3,520,700 + +0.1 3,520,702 + -0.7 3,520,702 + -0.0 3,520,702 + +0.5 3,520,702 + -1.0 3,520,702 + +0.5 3,520,702 + -1.8 3,520,702 + -2.1 3,520,702 + -0.7 3,520,702 + +0.4 3,520,702 + -0.0 3,520,703 - +1.9 3,520,703 - +2.0 3,520,721 + -2.4 3,520,721 + -0.8 3,520,721 + +0.4 3,520,721 + -0.1 3,520,721 + -0.4 3,520,721 + -0.7 3,520,721 + +0.1 3,520,721 + -1.6 3,520,721 + -1.8 3,520,721 + +0.4 3,520,722 - -1.1 3,520,722 - -0.1 3,520,726 + -0.1 3,520,726 + -0.4 3,520,726 + -0.7 3,520,726 + +1.1 3,520,776 + -0.0 3,520,779 + -0.1 3,520,779 + +0.2 3,520,779 + +0.9 3,521,399 + -0.1 3,521,400 - -0.3 3,521,400 - -0.5 3,521,400 - -0.2 3,521,402 + -0.8 3,521,402 + +0.0 3,521,402 + -0.2 3,521,403 - -0.8 3,521,403 - -0.9 3,521,405 + +0.5 3,521,405 + -0.6 3,521,436 - +0.1 3,521,436 - -0.4 3,521,493 + +0.8 3,521,517 + +0.1 3,521,517 + +0.7 3,521,518 - -0.1 3,521,518 - +0.9 3,521,518 - +0.7 3,521,518 - -0.9 3,521,519 + +0.2 3,521,555 - +0.9 3,521,564 + +0.3 3,521,576 + -0.9 3,521,576 + -0.1 3,521,576 + +1.2 3,521,577 - -0.0 3,521,577 - -0.7 3,521,577 - +0.8 3,521,589 + -0.2 3,521,590 - -0.2 3,521,596 - -0.3 3,521,596 - -0.6 3,521,796 + Pf6N2E2_3037 0.12 +1.2 3,521,796 + Pf6N2E2_3037 0.12 -2.6 3,521,796 + Pf6N2E2_3037 0.12 -0.2 3,521,797 - Pf6N2E2_3037 0.12 -2.4 3,521,870 + Pf6N2E2_3037 0.19 -2.7 3,522,004 - Pf6N2E2_3037 0.32 +0.2 3,522,051 + Pf6N2E2_3037 0.37 +0.7 3,522,136 + Pf6N2E2_3037 0.45 -0.8 3,522,137 - Pf6N2E2_3037 0.45 -1.1 3,522,235 + Pf6N2E2_3037 0.55 -1.1 3,522,236 - Pf6N2E2_3037 0.55 +0.2 3,522,236 - Pf6N2E2_3037 0.55 -0.6 3,522,343 + Pf6N2E2_3037 0.66 -0.9 3,522,517 + Pf6N2E2_3037 0.83 -0.8 3,522,517 + Pf6N2E2_3037 0.83 +0.2 3,522,526 + Pf6N2E2_3037 0.84 -0.9 3,522,526 + Pf6N2E2_3037 0.84 -0.1 3,522,526 + Pf6N2E2_3037 0.84 -0.7 3,522,526 + Pf6N2E2_3037 0.84 -0.5 3,522,526 + Pf6N2E2_3037 0.84 +1.8 3,522,526 + Pf6N2E2_3037 0.84 +0.1 3,522,527 - Pf6N2E2_3037 0.84 -0.4 3,522,527 - Pf6N2E2_3037 0.84 -0.8 3,522,527 - Pf6N2E2_3037 0.84 -0.1 3,522,527 - Pf6N2E2_3037 0.84 +1.2 3,522,530 + Pf6N2E2_3037 0.84 -0.5 3,522,530 + Pf6N2E2_3037 0.84 -1.2 3,522,530 + Pf6N2E2_3037 0.84 -1.1 3,522,530 + Pf6N2E2_3037 0.84 -0.3 3,522,530 + Pf6N2E2_3037 0.84 -0.6 3,522,530 + Pf6N2E2_3037 0.84 +0.2 3,522,530 + Pf6N2E2_3037 0.84 -0.6 3,522,530 + Pf6N2E2_3037 0.84 -1.8 3,522,530 + Pf6N2E2_3037 0.84 -0.4 3,522,530 + Pf6N2E2_3037 0.84 -0.6 3,522,530 + Pf6N2E2_3037 0.84 -1.3 3,522,530 + Pf6N2E2_3037 0.84 -0.8 3,522,530 + Pf6N2E2_3037 0.84 +1.5 3,522,530 + Pf6N2E2_3037 0.84 -1.9 3,522,530 + Pf6N2E2_3037 0.84 +0.1 3,522,530 + Pf6N2E2_3037 0.84 -2.3 3,522,530 + Pf6N2E2_3037 0.84 -0.6 3,522,530 + Pf6N2E2_3037 0.84 -1.1 3,522,531 - Pf6N2E2_3037 0.85 -1.2 3,522,531 - Pf6N2E2_3037 0.85 -0.5 3,522,531 - Pf6N2E2_3037 0.85 -0.4 3,522,531 - Pf6N2E2_3037 0.85 +0.0 3,522,531 - Pf6N2E2_3037 0.85 -2.9 3,522,531 - Pf6N2E2_3037 0.85 -1.4 3,522,531 - Pf6N2E2_3037 0.85 -1.7 3,522,531 - Pf6N2E2_3037 0.85 -1.6 3,522,531 - Pf6N2E2_3037 0.85 +0.7 3,522,531 - Pf6N2E2_3037 0.85 -1.2 3,522,531 - Pf6N2E2_3037 0.85 -0.6 3,522,531 - Pf6N2E2_3037 0.85 -0.8 3,522,539 + Pf6N2E2_3037 0.85 -0.2 3,522,539 + Pf6N2E2_3037 0.85 -0.3 3,522,614 + -0.8 3,522,690 + -0.4 3,522,690 + -0.9 3,522,690 + -3.9 3,522,691 - -1.1 3,522,692 + -0.7 3,522,692 + -0.6 3,522,692 + -1.2 3,522,692 + -0.6 3,522,692 + -1.0 3,522,693 - +0.9 3,522,766 - +1.2
Or see this region's nucleotide sequence