Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2496

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2495 and Pf6N2E2_2496 are separated by 121 nucleotidesPf6N2E2_2496 and Pf6N2E2_2497 are separated by 226 nucleotides Pf6N2E2_2495 - Ethanolamine permease, at 2,944,802 to 2,946,166 _2495 Pf6N2E2_2496 - FIG00956575: hypothetical protein, at 2,946,288 to 2,946,455 _2496 Pf6N2E2_2497 - NOHBY730; no homolog in Saccharomyces cerevisiae, at 2,946,682 to 2,947,533 _2497 Position (kb) 2946 2947Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2945.483 kb on + strand, within Pf6N2E2_2495at 2945.484 kb on - strand, within Pf6N2E2_2495at 2945.484 kb on - strand, within Pf6N2E2_2495at 2945.484 kb on - strand, within Pf6N2E2_2495at 2945.509 kb on - strand, within Pf6N2E2_2495at 2945.509 kb on - strand, within Pf6N2E2_2495at 2945.823 kb on - strand, within Pf6N2E2_2495at 2945.906 kb on + strand, within Pf6N2E2_2495at 2945.906 kb on + strand, within Pf6N2E2_2495at 2945.906 kb on + strand, within Pf6N2E2_2495at 2945.906 kb on + strand, within Pf6N2E2_2495at 2945.906 kb on + strand, within Pf6N2E2_2495at 2945.907 kb on - strand, within Pf6N2E2_2495at 2945.907 kb on - strand, within Pf6N2E2_2495at 2945.907 kb on - strand, within Pf6N2E2_2495at 2945.907 kb on - strand, within Pf6N2E2_2495at 2945.941 kb on + strand, within Pf6N2E2_2495at 2946.012 kb on + strand, within Pf6N2E2_2495at 2946.101 kb on + strandat 2946.102 kb on - strandat 2946.189 kb on + strandat 2946.190 kb on - strandat 2946.190 kb on - strandat 2946.190 kb on - strandat 2946.190 kb on - strandat 2946.192 kb on + strandat 2946.192 kb on + strandat 2946.193 kb on - strandat 2946.193 kb on - strandat 2946.193 kb on - strandat 2946.193 kb on - strandat 2946.222 kb on + strandat 2946.222 kb on + strandat 2946.222 kb on + strandat 2946.229 kb on + strandat 2946.229 kb on + strandat 2946.229 kb on + strandat 2946.229 kb on + strandat 2946.288 kb on - strandat 2946.297 kb on + strandat 2946.416 kb on + strand, within Pf6N2E2_2496at 2946.532 kb on - strandat 2946.684 kb on - strandat 2946.708 kb on + strandat 2946.709 kb on - strandat 2946.732 kb on - strandat 2946.732 kb on - strandat 2946.786 kb on - strand, within Pf6N2E2_2497at 2946.786 kb on - strand, within Pf6N2E2_2497at 2946.920 kb on + strand, within Pf6N2E2_2497at 2946.920 kb on + strand, within Pf6N2E2_2497at 2946.956 kb on + strand, within Pf6N2E2_2497at 2946.956 kb on + strand, within Pf6N2E2_2497at 2946.956 kb on + strand, within Pf6N2E2_2497at 2946.956 kb on + strand, within Pf6N2E2_2497at 2946.957 kb on - strand, within Pf6N2E2_2497at 2946.957 kb on - strand, within Pf6N2E2_2497at 2946.957 kb on - strand, within Pf6N2E2_2497at 2946.957 kb on - strand, within Pf6N2E2_2497at 2946.957 kb on - strand, within Pf6N2E2_2497at 2946.957 kb on - strand, within Pf6N2E2_2497at 2946.957 kb on - strand, within Pf6N2E2_2497at 2946.957 kb on - strand, within Pf6N2E2_2497at 2946.957 kb on - strand, within Pf6N2E2_2497at 2946.972 kb on + strand, within Pf6N2E2_2497at 2946.973 kb on - strand, within Pf6N2E2_2497at 2946.973 kb on - strand, within Pf6N2E2_2497at 2946.993 kb on + strand, within Pf6N2E2_2497at 2946.993 kb on + strand, within Pf6N2E2_2497at 2946.993 kb on + strand, within Pf6N2E2_2497at 2947.106 kb on + strand, within Pf6N2E2_2497at 2947.106 kb on + strand, within Pf6N2E2_2497at 2947.106 kb on + strand, within Pf6N2E2_2497at 2947.106 kb on + strand, within Pf6N2E2_2497at 2947.107 kb on - strand, within Pf6N2E2_2497at 2947.107 kb on - strand, within Pf6N2E2_2497at 2947.242 kb on + strand, within Pf6N2E2_2497at 2947.330 kb on + strand, within Pf6N2E2_2497at 2947.378 kb on + strand, within Pf6N2E2_2497at 2947.379 kb on - strand, within Pf6N2E2_2497at 2947.379 kb on - strand, within Pf6N2E2_2497at 2947.392 kb on + strand, within Pf6N2E2_2497at 2947.392 kb on + strand, within Pf6N2E2_2497

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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2,945,483 + Pf6N2E2_2495 0.50 -0.3
2,945,484 - Pf6N2E2_2495 0.50 +0.1
2,945,484 - Pf6N2E2_2495 0.50 +1.3
2,945,484 - Pf6N2E2_2495 0.50 -1.2
2,945,509 - Pf6N2E2_2495 0.52 -3.1
2,945,509 - Pf6N2E2_2495 0.52 +0.1
2,945,823 - Pf6N2E2_2495 0.75 -1.0
2,945,906 + Pf6N2E2_2495 0.81 -0.0
2,945,906 + Pf6N2E2_2495 0.81 -0.6
2,945,906 + Pf6N2E2_2495 0.81 -0.5
2,945,906 + Pf6N2E2_2495 0.81 +0.4
2,945,906 + Pf6N2E2_2495 0.81 -0.4
2,945,907 - Pf6N2E2_2495 0.81 -1.4
2,945,907 - Pf6N2E2_2495 0.81 -0.5
2,945,907 - Pf6N2E2_2495 0.81 +0.1
2,945,907 - Pf6N2E2_2495 0.81 -0.1
2,945,941 + Pf6N2E2_2495 0.83 -0.2
2,946,012 + Pf6N2E2_2495 0.89 -1.2
2,946,101 + -0.2
2,946,102 - +0.0
2,946,189 + -0.2
2,946,190 - -0.8
2,946,190 - -0.8
2,946,190 - +1.1
2,946,190 - +0.5
2,946,192 + +0.7
2,946,192 + +0.3
2,946,193 - -0.8
2,946,193 - -0.5
2,946,193 - -0.0
2,946,193 - +1.2
2,946,222 + -0.2
2,946,222 + +0.4
2,946,222 + -0.4
2,946,229 + -0.0
2,946,229 + -3.1
2,946,229 + +0.1
2,946,229 + -1.1
2,946,288 - -1.1
2,946,297 + +1.2
2,946,416 + Pf6N2E2_2496 0.76 -0.9
2,946,532 - +0.3
2,946,684 - -0.3
2,946,708 + +0.2
2,946,709 - +0.5
2,946,732 - +0.3
2,946,732 - -0.8
2,946,786 - Pf6N2E2_2497 0.12 -0.1
2,946,786 - Pf6N2E2_2497 0.12 -0.8
2,946,920 + Pf6N2E2_2497 0.28 +0.0
2,946,920 + Pf6N2E2_2497 0.28 -0.2
2,946,956 + Pf6N2E2_2497 0.32 -0.3
2,946,956 + Pf6N2E2_2497 0.32 +1.9
2,946,956 + Pf6N2E2_2497 0.32 +0.6
2,946,956 + Pf6N2E2_2497 0.32 +0.1
2,946,957 - Pf6N2E2_2497 0.32 -1.6
2,946,957 - Pf6N2E2_2497 0.32 -3.8
2,946,957 - Pf6N2E2_2497 0.32 +1.2
2,946,957 - Pf6N2E2_2497 0.32 -0.2
2,946,957 - Pf6N2E2_2497 0.32 -1.2
2,946,957 - Pf6N2E2_2497 0.32 -0.6
2,946,957 - Pf6N2E2_2497 0.32 -0.1
2,946,957 - Pf6N2E2_2497 0.32 +1.0
2,946,957 - Pf6N2E2_2497 0.32 -0.6
2,946,972 + Pf6N2E2_2497 0.34 +0.8
2,946,973 - Pf6N2E2_2497 0.34 +0.8
2,946,973 - Pf6N2E2_2497 0.34 +1.4
2,946,993 + Pf6N2E2_2497 0.37 +0.4
2,946,993 + Pf6N2E2_2497 0.37 -0.7
2,946,993 + Pf6N2E2_2497 0.37 -0.7
2,947,106 + Pf6N2E2_2497 0.50 -1.4
2,947,106 + Pf6N2E2_2497 0.50 -0.4
2,947,106 + Pf6N2E2_2497 0.50 +0.4
2,947,106 + Pf6N2E2_2497 0.50 -0.7
2,947,107 - Pf6N2E2_2497 0.50 +0.9
2,947,107 - Pf6N2E2_2497 0.50 +1.1
2,947,242 + Pf6N2E2_2497 0.66 +0.5
2,947,330 + Pf6N2E2_2497 0.76 -0.6
2,947,378 + Pf6N2E2_2497 0.82 -0.2
2,947,379 - Pf6N2E2_2497 0.82 +0.9
2,947,379 - Pf6N2E2_2497 0.82 +1.0
2,947,392 + Pf6N2E2_2497 0.83 -0.2
2,947,392 + Pf6N2E2_2497 0.83 +0.0

Or see this region's nucleotide sequence