Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2022

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2021 and Pf6N2E2_2022 are separated by 68 nucleotidesPf6N2E2_2022 and Pf6N2E2_2023 are separated by 184 nucleotidesPf6N2E2_2023 and Pf6N2E2_2024 are separated by 7 nucleotides Pf6N2E2_2021 - Excinuclease ABC subunit C, at 2,409,570 to 2,411,327 _2021 Pf6N2E2_2022 - BarA-associated response regulator UvrY (= GacA = SirA), at 2,411,396 to 2,411,980 _2022 Pf6N2E2_2023 - Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1), at 2,412,165 to 2,412,599 _2023 Pf6N2E2_2024 - Hydrolase, carbon-nitrogen family, at 2,412,607 to 2,413,368 _2024 Position (kb) 2411 2412Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2410.486 kb on + strand, within Pf6N2E2_2021at 2410.486 kb on + strand, within Pf6N2E2_2021at 2410.487 kb on - strand, within Pf6N2E2_2021at 2410.487 kb on - strand, within Pf6N2E2_2021at 2410.487 kb on - strand, within Pf6N2E2_2021at 2410.489 kb on + strand, within Pf6N2E2_2021at 2410.835 kb on - strand, within Pf6N2E2_2021at 2410.889 kb on - strand, within Pf6N2E2_2021at 2410.918 kb on + strand, within Pf6N2E2_2021at 2410.918 kb on + strand, within Pf6N2E2_2021at 2410.919 kb on - strand, within Pf6N2E2_2021at 2410.921 kb on + strand, within Pf6N2E2_2021at 2410.921 kb on + strand, within Pf6N2E2_2021at 2410.921 kb on + strand, within Pf6N2E2_2021at 2410.922 kb on - strand, within Pf6N2E2_2021at 2410.922 kb on - strand, within Pf6N2E2_2021at 2411.011 kb on + strand, within Pf6N2E2_2021at 2411.011 kb on + strand, within Pf6N2E2_2021at 2411.083 kb on + strand, within Pf6N2E2_2021at 2411.090 kb on - strand, within Pf6N2E2_2021at 2411.119 kb on + strand, within Pf6N2E2_2021at 2411.119 kb on + strand, within Pf6N2E2_2021at 2411.257 kb on + strandat 2411.258 kb on - strandat 2411.299 kb on + strandat 2411.300 kb on - strandat 2411.480 kb on - strand, within Pf6N2E2_2022at 2411.490 kb on + strand, within Pf6N2E2_2022at 2411.490 kb on + strand, within Pf6N2E2_2022at 2411.491 kb on - strand, within Pf6N2E2_2022at 2411.491 kb on - strand, within Pf6N2E2_2022at 2411.491 kb on - strand, within Pf6N2E2_2022at 2411.491 kb on - strand, within Pf6N2E2_2022at 2411.540 kb on + strand, within Pf6N2E2_2022at 2411.540 kb on + strand, within Pf6N2E2_2022at 2411.541 kb on - strand, within Pf6N2E2_2022at 2411.541 kb on - strand, within Pf6N2E2_2022at 2411.541 kb on - strand, within Pf6N2E2_2022at 2411.667 kb on + strand, within Pf6N2E2_2022at 2411.667 kb on + strand, within Pf6N2E2_2022at 2411.667 kb on + strand, within Pf6N2E2_2022at 2411.667 kb on + strand, within Pf6N2E2_2022at 2411.667 kb on + strand, within Pf6N2E2_2022at 2411.668 kb on - strand, within Pf6N2E2_2022at 2411.668 kb on - strand, within Pf6N2E2_2022at 2411.951 kb on + strandat 2411.951 kb on + strandat 2411.952 kb on - strandat 2411.986 kb on + strandat 2411.986 kb on + strandat 2411.987 kb on - strandat 2411.987 kb on - strandat 2412.032 kb on - strandat 2412.083 kb on - strandat 2412.106 kb on - strandat 2412.122 kb on + strandat 2412.122 kb on + strandat 2412.123 kb on - strandat 2412.238 kb on + strand, within Pf6N2E2_2023at 2412.238 kb on + strand, within Pf6N2E2_2023at 2412.238 kb on + strand, within Pf6N2E2_2023at 2412.239 kb on - strand, within Pf6N2E2_2023at 2412.366 kb on + strand, within Pf6N2E2_2023at 2412.385 kb on + strand, within Pf6N2E2_2023at 2412.385 kb on + strand, within Pf6N2E2_2023at 2412.385 kb on + strand, within Pf6N2E2_2023at 2412.385 kb on + strand, within Pf6N2E2_2023at 2412.385 kb on + strand, within Pf6N2E2_2023at 2412.386 kb on - strand, within Pf6N2E2_2023at 2412.386 kb on - strand, within Pf6N2E2_2023at 2412.386 kb on - strand, within Pf6N2E2_2023at 2412.386 kb on - strand, within Pf6N2E2_2023at 2412.386 kb on - strand, within Pf6N2E2_2023at 2412.386 kb on - strand, within Pf6N2E2_2023at 2412.520 kb on + strand, within Pf6N2E2_2023at 2412.520 kb on + strand, within Pf6N2E2_2023at 2412.520 kb on + strand, within Pf6N2E2_2023at 2412.521 kb on - strand, within Pf6N2E2_2023at 2412.812 kb on + strand, within Pf6N2E2_2024at 2412.813 kb on - strand, within Pf6N2E2_2024at 2412.813 kb on - strand, within Pf6N2E2_2024at 2412.813 kb on - strand, within Pf6N2E2_2024at 2412.842 kb on + strand, within Pf6N2E2_2024at 2412.842 kb on + strand, within Pf6N2E2_2024at 2412.875 kb on + strand, within Pf6N2E2_2024at 2412.876 kb on - strand, within Pf6N2E2_2024at 2412.876 kb on - strand, within Pf6N2E2_2024at 2412.876 kb on - strand, within Pf6N2E2_2024at 2412.882 kb on + strand, within Pf6N2E2_2024

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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2,410,486 + Pf6N2E2_2021 0.52 -0.3
2,410,486 + Pf6N2E2_2021 0.52 -0.1
2,410,487 - Pf6N2E2_2021 0.52 +0.2
2,410,487 - Pf6N2E2_2021 0.52 +0.8
2,410,487 - Pf6N2E2_2021 0.52 -0.5
2,410,489 + Pf6N2E2_2021 0.52 +0.4
2,410,835 - Pf6N2E2_2021 0.72 +1.0
2,410,889 - Pf6N2E2_2021 0.75 -0.5
2,410,918 + Pf6N2E2_2021 0.77 -0.1
2,410,918 + Pf6N2E2_2021 0.77 +0.5
2,410,919 - Pf6N2E2_2021 0.77 -0.5
2,410,921 + Pf6N2E2_2021 0.77 -1.3
2,410,921 + Pf6N2E2_2021 0.77 -0.1
2,410,921 + Pf6N2E2_2021 0.77 +0.2
2,410,922 - Pf6N2E2_2021 0.77 -0.4
2,410,922 - Pf6N2E2_2021 0.77 -0.5
2,411,011 + Pf6N2E2_2021 0.82 +0.7
2,411,011 + Pf6N2E2_2021 0.82 +0.5
2,411,083 + Pf6N2E2_2021 0.86 +0.3
2,411,090 - Pf6N2E2_2021 0.86 -0.2
2,411,119 + Pf6N2E2_2021 0.88 -1.5
2,411,119 + Pf6N2E2_2021 0.88 -0.6
2,411,257 + -0.3
2,411,258 - -2.5
2,411,299 + +0.1
2,411,300 - +1.2
2,411,480 - Pf6N2E2_2022 0.14 -1.5
2,411,490 + Pf6N2E2_2022 0.16 -1.5
2,411,490 + Pf6N2E2_2022 0.16 -1.0
2,411,491 - Pf6N2E2_2022 0.16 -1.0
2,411,491 - Pf6N2E2_2022 0.16 -1.8
2,411,491 - Pf6N2E2_2022 0.16 -1.1
2,411,491 - Pf6N2E2_2022 0.16 -3.0
2,411,540 + Pf6N2E2_2022 0.25 -1.1
2,411,540 + Pf6N2E2_2022 0.25 -0.1
2,411,541 - Pf6N2E2_2022 0.25 -0.1
2,411,541 - Pf6N2E2_2022 0.25 -0.8
2,411,541 - Pf6N2E2_2022 0.25 +0.8
2,411,667 + Pf6N2E2_2022 0.46 +0.2
2,411,667 + Pf6N2E2_2022 0.46 -0.2
2,411,667 + Pf6N2E2_2022 0.46 -0.1
2,411,667 + Pf6N2E2_2022 0.46 -0.4
2,411,667 + Pf6N2E2_2022 0.46 -1.8
2,411,668 - Pf6N2E2_2022 0.46 -2.7
2,411,668 - Pf6N2E2_2022 0.46 -3.8
2,411,951 + -1.9
2,411,951 + -2.0
2,411,952 - -1.1
2,411,986 + -1.5
2,411,986 + -1.9
2,411,987 - -2.4
2,411,987 - +0.1
2,412,032 - -1.3
2,412,083 - -0.5
2,412,106 - -0.6
2,412,122 + -1.0
2,412,122 + -1.9
2,412,123 - -0.6
2,412,238 + Pf6N2E2_2023 0.17 -1.3
2,412,238 + Pf6N2E2_2023 0.17 -0.6
2,412,238 + Pf6N2E2_2023 0.17 +0.8
2,412,239 - Pf6N2E2_2023 0.17 -0.8
2,412,366 + Pf6N2E2_2023 0.46 -0.3
2,412,385 + Pf6N2E2_2023 0.51 -0.6
2,412,385 + Pf6N2E2_2023 0.51 -0.3
2,412,385 + Pf6N2E2_2023 0.51 +0.0
2,412,385 + Pf6N2E2_2023 0.51 +0.7
2,412,385 + Pf6N2E2_2023 0.51 -1.1
2,412,386 - Pf6N2E2_2023 0.51 +1.2
2,412,386 - Pf6N2E2_2023 0.51 -0.4
2,412,386 - Pf6N2E2_2023 0.51 +0.7
2,412,386 - Pf6N2E2_2023 0.51 +1.2
2,412,386 - Pf6N2E2_2023 0.51 +0.1
2,412,386 - Pf6N2E2_2023 0.51 -0.5
2,412,520 + Pf6N2E2_2023 0.82 +0.9
2,412,520 + Pf6N2E2_2023 0.82 -3.2
2,412,520 + Pf6N2E2_2023 0.82 -1.6
2,412,521 - Pf6N2E2_2023 0.82 +0.1
2,412,812 + Pf6N2E2_2024 0.27 +0.4
2,412,813 - Pf6N2E2_2024 0.27 +1.0
2,412,813 - Pf6N2E2_2024 0.27 +0.2
2,412,813 - Pf6N2E2_2024 0.27 +0.6
2,412,842 + Pf6N2E2_2024 0.31 +0.9
2,412,842 + Pf6N2E2_2024 0.31 -0.5
2,412,875 + Pf6N2E2_2024 0.35 +0.2
2,412,876 - Pf6N2E2_2024 0.35 +0.1
2,412,876 - Pf6N2E2_2024 0.35 -0.2
2,412,876 - Pf6N2E2_2024 0.35 +0.7
2,412,882 + Pf6N2E2_2024 0.36 +0.1

Or see this region's nucleotide sequence