Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1676

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_1675 and Pf6N2E2_1676 are separated by 10 nucleotidesPf6N2E2_1676 and Pf6N2E2_1677 are separated by 157 nucleotides Pf6N2E2_1675 - Lipid carrier protein or keto acyl-CoA thiolase Ltp3 (EC 2.3.1.16), at 1,981,221 to 1,982,417 _1675 Pf6N2E2_1676 - conserved protein associated with acetyl-CoA C-acyltransferase, at 1,982,428 to 1,982,868 _1676 Pf6N2E2_1677 - Chalcone synthase (EC 2.3.1.74), at 1,983,026 to 1,984,075 _1677 Position (kb) 1982 1983Strain fitness (log2 ratio) -2 -1 0 1 2at 1981.472 kb on + strand, within Pf6N2E2_1675at 1981.473 kb on - strand, within Pf6N2E2_1675at 1981.539 kb on + strand, within Pf6N2E2_1675at 1981.539 kb on + strand, within Pf6N2E2_1675at 1981.599 kb on + strandat 1981.599 kb on + strand, within Pf6N2E2_1675at 1981.600 kb on - strandat 1981.632 kb on + strand, within Pf6N2E2_1675at 1981.632 kb on + strand, within Pf6N2E2_1675at 1981.723 kb on + strand, within Pf6N2E2_1675at 1981.751 kb on + strand, within Pf6N2E2_1675at 1981.751 kb on + strandat 1981.751 kb on + strand, within Pf6N2E2_1675at 1981.751 kb on + strand, within Pf6N2E2_1675at 1981.751 kb on + strand, within Pf6N2E2_1675at 1981.755 kb on + strand, within Pf6N2E2_1675at 1981.755 kb on + strand, within Pf6N2E2_1675at 1981.921 kb on + strand, within Pf6N2E2_1675at 1981.941 kb on + strand, within Pf6N2E2_1675at 1981.942 kb on - strand, within Pf6N2E2_1675at 1981.974 kb on + strand, within Pf6N2E2_1675at 1982.017 kb on + strand, within Pf6N2E2_1675at 1982.017 kb on + strand, within Pf6N2E2_1675at 1982.017 kb on + strandat 1982.017 kb on + strand, within Pf6N2E2_1675at 1982.017 kb on + strand, within Pf6N2E2_1675at 1982.017 kb on + strand, within Pf6N2E2_1675at 1982.017 kb on + strand, within Pf6N2E2_1675at 1982.018 kb on - strand, within Pf6N2E2_1675at 1982.064 kb on + strand, within Pf6N2E2_1675at 1982.158 kb on + strand, within Pf6N2E2_1675at 1982.158 kb on + strand, within Pf6N2E2_1675at 1982.158 kb on + strand, within Pf6N2E2_1675at 1982.159 kb on - strand, within Pf6N2E2_1675at 1982.203 kb on + strand, within Pf6N2E2_1675at 1982.203 kb on + strand, within Pf6N2E2_1675at 1982.203 kb on + strand, within Pf6N2E2_1675at 1982.291 kb on + strand, within Pf6N2E2_1675at 1982.674 kb on + strand, within Pf6N2E2_1676at 1982.747 kb on + strand, within Pf6N2E2_1676at 1982.747 kb on + strand, within Pf6N2E2_1676at 1982.747 kb on + strand, within Pf6N2E2_1676at 1982.845 kb on + strandat 1982.845 kb on + strandat 1982.845 kb on + strandat 1982.846 kb on - strandat 1982.855 kb on + strandat 1982.866 kb on + strandat 1982.995 kb on - strandat 1983.010 kb on + strandat 1983.032 kb on - strandat 1983.065 kb on + strandat 1983.066 kb on - strandat 1983.066 kb on - strandat 1983.191 kb on - strand, within Pf6N2E2_1677at 1983.411 kb on + strand, within Pf6N2E2_1677at 1983.665 kb on + strand, within Pf6N2E2_1677at 1983.665 kb on + strand, within Pf6N2E2_1677at 1983.689 kb on + strand, within Pf6N2E2_1677at 1983.689 kb on + strand, within Pf6N2E2_1677at 1983.689 kb on + strand, within Pf6N2E2_1677at 1983.690 kb on - strand, within Pf6N2E2_1677at 1983.690 kb on - strand, within Pf6N2E2_1677at 1983.690 kb on - strand, within Pf6N2E2_1677at 1983.698 kb on + strand, within Pf6N2E2_1677at 1983.699 kb on - strand, within Pf6N2E2_1677at 1983.699 kb on - strand, within Pf6N2E2_1677at 1983.792 kb on - strand, within Pf6N2E2_1677

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
1,981,472 + Pf6N2E2_1675 0.21 +1.2
1,981,473 - Pf6N2E2_1675 0.21 +0.4
1,981,539 + Pf6N2E2_1675 0.27 -0.3
1,981,539 + Pf6N2E2_1675 0.27 -0.7
1,981,599 + +0.6
1,981,599 + Pf6N2E2_1675 0.32 +0.8
1,981,600 - +2.6
1,981,632 + Pf6N2E2_1675 0.34 +0.6
1,981,632 + Pf6N2E2_1675 0.34 -0.0
1,981,723 + Pf6N2E2_1675 0.42 -0.4
1,981,751 + Pf6N2E2_1675 0.44 -0.2
1,981,751 + -0.4
1,981,751 + Pf6N2E2_1675 0.44 +1.0
1,981,751 + Pf6N2E2_1675 0.44 -0.1
1,981,751 + Pf6N2E2_1675 0.44 -0.1
1,981,755 + Pf6N2E2_1675 0.45 -0.3
1,981,755 + Pf6N2E2_1675 0.45 +0.1
1,981,921 + Pf6N2E2_1675 0.58 -0.6
1,981,941 + Pf6N2E2_1675 0.60 +0.9
1,981,942 - Pf6N2E2_1675 0.60 +1.9
1,981,974 + Pf6N2E2_1675 0.63 -0.4
1,982,017 + Pf6N2E2_1675 0.66 +0.4
1,982,017 + Pf6N2E2_1675 0.66 -1.0
1,982,017 + -1.7
1,982,017 + Pf6N2E2_1675 0.66 -0.2
1,982,017 + Pf6N2E2_1675 0.66 -1.1
1,982,017 + Pf6N2E2_1675 0.66 -1.5
1,982,017 + Pf6N2E2_1675 0.66 +0.0
1,982,018 - Pf6N2E2_1675 0.67 -1.8
1,982,064 + Pf6N2E2_1675 0.70 +0.6
1,982,158 + Pf6N2E2_1675 0.78 -0.4
1,982,158 + Pf6N2E2_1675 0.78 -0.4
1,982,158 + Pf6N2E2_1675 0.78 +1.0
1,982,159 - Pf6N2E2_1675 0.78 +1.0
1,982,203 + Pf6N2E2_1675 0.82 +1.2
1,982,203 + Pf6N2E2_1675 0.82 +0.7
1,982,203 + Pf6N2E2_1675 0.82 -1.3
1,982,291 + Pf6N2E2_1675 0.89 -0.2
1,982,674 + Pf6N2E2_1676 0.56 +0.5
1,982,747 + Pf6N2E2_1676 0.72 -0.8
1,982,747 + Pf6N2E2_1676 0.72 -0.7
1,982,747 + Pf6N2E2_1676 0.72 -2.7
1,982,845 + +1.9
1,982,845 + +0.9
1,982,845 + +0.2
1,982,846 - -0.1
1,982,855 + -0.6
1,982,866 + +1.1
1,982,995 - +1.8
1,983,010 + +0.9
1,983,032 - -0.3
1,983,065 + +0.2
1,983,066 - +0.2
1,983,066 - +1.6
1,983,191 - Pf6N2E2_1677 0.16 -1.4
1,983,411 + Pf6N2E2_1677 0.37 -0.5
1,983,665 + Pf6N2E2_1677 0.61 +0.6
1,983,665 + Pf6N2E2_1677 0.61 +0.8
1,983,689 + Pf6N2E2_1677 0.63 +0.2
1,983,689 + Pf6N2E2_1677 0.63 +1.3
1,983,689 + Pf6N2E2_1677 0.63 +0.3
1,983,690 - Pf6N2E2_1677 0.63 +1.4
1,983,690 - Pf6N2E2_1677 0.63 -2.5
1,983,690 - Pf6N2E2_1677 0.63 +0.4
1,983,698 + Pf6N2E2_1677 0.64 +0.5
1,983,699 - Pf6N2E2_1677 0.64 -1.8
1,983,699 - Pf6N2E2_1677 0.64 -0.8
1,983,792 - Pf6N2E2_1677 0.73 +0.6

Or see this region's nucleotide sequence