Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12740

Experiment: R2A with Zinc chloride 0.625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Zinc chloride 0.625 mM
2,853,843	+		LRK54_RS12735	0.49	+0.6
2,853,843	+		LRK54_RS12735	0.49	-1.0
2,853,843	+		LRK54_RS12735	0.49	-0.9
2,853,843	+		LRK54_RS12735	0.49	-1.4
2,853,843	+		LRK54_RS12735	0.49	+1.2
2,853,844	-		LRK54_RS12735	0.49	-1.9
2,854,269	+				-0.8
2,854,269	+				-1.9
2,854,269	+				-0.4
2,854,269	+				-0.1
2,854,270	-				-0.6
2,854,270	-				-0.4
2,854,270	-				-1.7
2,854,378	+				+0.1
2,854,378	+				-1.0
2,854,378	+				+0.4
2,854,378	+				-0.4
2,854,378	+				+0.1
2,854,378	+				+0.0
2,854,379	-				-0.4
2,854,379	-				-0.7
2,854,379	-				+1.8
2,854,379	-				-0.1
2,854,379	-				-0.2
2,854,379	-				-1.2
2,854,379	-				-0.4
2,854,379	-				+0.2
2,854,379	-				+0.1
2,854,424	+				-1.4
2,854,424	+				+0.7
2,854,424	+				+0.6
2,854,424	+				-0.3
2,854,424	+				-1.1
2,854,424	+				+0.2
2,854,424	+				-0.4
2,854,424	+				+0.2
2,854,424	+				+0.7
2,854,424	+				-0.8
2,854,424	+				-0.6
2,854,424	+				-0.8
2,854,424	+				+2.2
2,854,425	-				+0.0
2,854,425	-				-1.2
2,854,425	-				-0.2
2,854,425	-				+0.0
2,854,425	-				-0.1
2,854,425	-				-1.6
2,854,425	-				+1.4
2,854,425	-				-1.0
2,854,425	-				-0.2
2,854,425	-				+1.4
2,854,425	-				-0.5
2,854,425	-				-0.1
2,854,425	-				+0.6
2,854,425	-				+0.8
2,854,425	-				-1.2
2,854,425	-				-1.0
2,854,425	-				-0.0
2,854,447	+				-0.9
2,854,447	+				+0.0
2,854,447	+				-1.5
2,854,447	+				-1.6
2,854,447	+				-0.1
2,854,447	+				+0.1
2,854,447	+				-0.8
2,854,447	+				-0.1
2,854,447	+				-1.6
2,854,448	-				+0.2
2,854,448	-				-0.7
2,854,448	-				-1.0
2,854,500	+				-0.4
2,854,500	+				-0.5
2,854,500	+				-1.2
2,854,500	+				-1.0
2,854,588	+				-1.2
2,854,588	+				-1.9
2,854,588	+				+2.4
2,854,588	+				-0.4
2,854,588	+				-1.3
2,854,588	+				-0.2
2,854,588	+				-0.5
2,854,588	+				-1.0
2,854,589	-				+0.8
2,854,589	-				-0.6
2,854,589	-				+0.7
2,854,589	-				+1.0
2,854,660	+				-0.4
2,854,660	+				+0.0
2,854,661	-				-0.5
2,854,661	-				-1.3
2,854,661	-				-0.9
2,854,738	+		LRK54_RS12740	0.11	+0.7
2,854,795	+		LRK54_RS12740	0.13	-0.8
2,854,795	+		LRK54_RS12740	0.13	-0.9
2,854,795	+		LRK54_RS12740	0.13	-1.0
2,854,795	+		LRK54_RS12740	0.13	+2.4
2,854,795	+		LRK54_RS12740	0.13	+0.4
2,854,796	-		LRK54_RS12740	0.13	-0.3
2,854,796	-		LRK54_RS12740	0.13	-0.4
2,854,796	-		LRK54_RS12740	0.13	-0.3
2,854,796	-		LRK54_RS12740	0.13	+0.0
2,854,796	-		LRK54_RS12740	0.13	-0.5
2,854,796	-		LRK54_RS12740	0.13	+1.1
2,854,816	+		LRK54_RS12740	0.14	-0.0
2,854,957	+		LRK54_RS12740	0.20	-2.2
2,854,957	+		LRK54_RS12740	0.20	-0.4
2,854,957	+		LRK54_RS12740	0.20	-0.5
2,854,957	+		LRK54_RS12740	0.20	-0.3
2,854,958	-		LRK54_RS12740	0.20	-1.8
2,854,958	-		LRK54_RS12740	0.20	-1.1
2,854,958	-		LRK54_RS12740	0.20	+0.9
2,854,958	-		LRK54_RS12740	0.20	+0.1
2,854,958	-		LRK54_RS12740	0.20	-0.8
2,854,958	-		LRK54_RS12740	0.20	-0.0
2,854,958	-		LRK54_RS12740	0.20	-0.4
2,855,242	+		LRK54_RS12740	0.33	+0.6
2,855,242	+		LRK54_RS12740	0.33	-0.2
2,855,242	+		LRK54_RS12740	0.33	-0.6
2,855,242	+		LRK54_RS12740	0.33	-0.8
2,855,242	+		LRK54_RS12740	0.33	+1.0
2,855,242	+		LRK54_RS12740	0.33	-0.0
2,855,242	+		LRK54_RS12740	0.33	-0.5
2,855,242	+		LRK54_RS12740	0.33	-0.6
2,855,242	+		LRK54_RS12740	0.33	-0.5
2,855,242	+		LRK54_RS12740	0.33	-1.4
2,855,243	-		LRK54_RS12740	0.33	+1.4
2,855,243	-		LRK54_RS12740	0.33	+0.6
2,855,243	-		LRK54_RS12740	0.33	-0.9
2,855,243	-		LRK54_RS12740	0.33	-1.9
2,855,243	-		LRK54_RS12740	0.33	-1.4
2,855,243	-		LRK54_RS12740	0.33	-0.7
2,855,243	-		LRK54_RS12740	0.33	-1.2
2,855,243	-		LRK54_RS12740	0.33	-1.4
2,855,243	-		LRK54_RS12740	0.33	-2.1
2,855,243	-		LRK54_RS12740	0.33	-0.7
2,855,269	+		LRK54_RS12740	0.34	-2.0
2,855,269	+		LRK54_RS12740	0.34	-1.9
2,855,269	+		LRK54_RS12740	0.34	-1.6
2,855,269	+		LRK54_RS12740	0.34	-1.3
2,855,269	+		LRK54_RS12740	0.34	-2.6
2,855,270	-		LRK54_RS12740	0.34	-0.2
2,855,270	-		LRK54_RS12740	0.34	-0.5
2,855,270	-		LRK54_RS12740	0.34	-1.8
2,855,270	-		LRK54_RS12740	0.34	-2.0
2,855,270	-		LRK54_RS12740	0.34	-1.3
2,855,270	-		LRK54_RS12740	0.34	-1.1
2,855,270	-		LRK54_RS12740	0.34	-0.2
2,855,270	-		LRK54_RS12740	0.34	-1.0
2,855,270	-		LRK54_RS12740	0.34	-1.1
2,855,341	+		LRK54_RS12740	0.37	-0.4
2,855,341	+		LRK54_RS12740	0.37	-1.0
2,855,341	+		LRK54_RS12740	0.37	-1.2
2,855,341	+		LRK54_RS12740	0.37	-1.0
2,855,341	+		LRK54_RS12740	0.37	+0.2
2,855,341	+		LRK54_RS12740	0.37	+4.4
2,855,341	+		LRK54_RS12740	0.37	-0.5
2,855,341	+		LRK54_RS12740	0.37	-0.4
2,855,341	+		LRK54_RS12740	0.37	-1.4
2,855,341	+		LRK54_RS12740	0.37	+0.4
2,855,341	+		LRK54_RS12740	0.37	-1.3
2,855,341	+		LRK54_RS12740	0.37	-0.8
2,855,341	+		LRK54_RS12740	0.37	-2.0
2,855,341	+		LRK54_RS12740	0.37	-0.0
2,855,341	+		LRK54_RS12740	0.37	+0.9
2,855,342	-		LRK54_RS12740	0.37	-0.2
2,855,342	-		LRK54_RS12740	0.37	-0.1
2,855,342	-		LRK54_RS12740	0.37	-0.2
2,855,342	-		LRK54_RS12740	0.37	-1.5
2,855,342	-		LRK54_RS12740	0.37	-1.0
2,855,342	-		LRK54_RS12740	0.37	-2.1
2,855,342	-		LRK54_RS12740	0.37	-0.6
2,855,342	-		LRK54_RS12740	0.37	+0.0
2,855,342	-		LRK54_RS12740	0.37	-2.1
2,855,342	-		LRK54_RS12740	0.37	-1.4
2,855,342	-		LRK54_RS12740	0.37	+1.0
2,855,342	-		LRK54_RS12740	0.37	-0.4
2,855,342	-		LRK54_RS12740	0.37	-2.0
2,855,342	-		LRK54_RS12740	0.37	-1.7
2,855,416	+		LRK54_RS12740	0.40	-1.2
2,855,416	+		LRK54_RS12740	0.40	+1.4
2,855,416	+		LRK54_RS12740	0.40	-1.2
2,855,416	+		LRK54_RS12740	0.40	-0.2
2,855,416	+		LRK54_RS12740	0.40	-1.1
2,855,416	+		LRK54_RS12740	0.40	-0.9
2,855,416	+		LRK54_RS12740	0.40	-0.5
2,855,416	+		LRK54_RS12740	0.40	-2.1
2,855,416	+		LRK54_RS12740	0.40	-1.0
2,855,416	+		LRK54_RS12740	0.40	-0.1
2,855,416	+		LRK54_RS12740	0.40	-0.4
2,855,417	-		LRK54_RS12740	0.40	-1.4
2,855,417	-		LRK54_RS12740	0.40	-0.9
2,855,417	-		LRK54_RS12740	0.40	-2.7
2,855,417	-		LRK54_RS12740	0.40	-2.2
2,855,417	-		LRK54_RS12740	0.40	-0.7
2,855,417	-		LRK54_RS12740	0.40	-0.8
2,855,417	-		LRK54_RS12740	0.40	+1.4
2,855,417	-		LRK54_RS12740	0.40	-1.1
2,855,417	-		LRK54_RS12740	0.40	-0.6
2,855,417	-		LRK54_RS12740	0.40	-0.2
2,855,417	-		LRK54_RS12740	0.40	-1.8
2,855,417	-		LRK54_RS12740	0.40	-0.5
2,855,419	+		LRK54_RS12740	0.40	+0.0
2,855,419	+		LRK54_RS12740	0.40	-0.4
2,855,419	+		LRK54_RS12740	0.40	+0.8
2,855,419	+		LRK54_RS12740	0.40	+1.0
2,855,419	+		LRK54_RS12740	0.40	-0.3
2,855,419	+		LRK54_RS12740	0.40	-0.5
2,855,419	+		LRK54_RS12740	0.40	-0.5
2,855,419	+		LRK54_RS12740	0.40	+0.8
2,855,419	+		LRK54_RS12740	0.40	-0.8
2,855,419	+		LRK54_RS12740	0.40	-0.8
2,855,419	+		LRK54_RS12740	0.40	-0.9
2,855,419	+		LRK54_RS12740	0.40	-0.3
2,855,419	+		LRK54_RS12740	0.40	-0.6
2,855,420	-		LRK54_RS12740	0.40	-1.0
2,855,420	-		LRK54_RS12740	0.40	-2.8
2,855,420	-		LRK54_RS12740	0.40	-0.6
2,855,420	-		LRK54_RS12740	0.40	-0.0
2,855,420	-		LRK54_RS12740	0.40	-3.2
2,855,420	-		LRK54_RS12740	0.40	-3.1
2,855,420	-		LRK54_RS12740	0.40	-0.8
2,855,420	-		LRK54_RS12740	0.40	-2.2
2,855,420	-		LRK54_RS12740	0.40	-1.1
2,855,420	-		LRK54_RS12740	0.40	-1.0
2,855,420	-		LRK54_RS12740	0.40	-0.6
2,855,420	-		LRK54_RS12740	0.40	-0.3
2,855,420	-		LRK54_RS12740	0.40	-1.0
2,855,420	-		LRK54_RS12740	0.40	-1.0
2,855,689	+		LRK54_RS12740	0.52	-1.0
2,855,689	+		LRK54_RS12740	0.52	-1.0
2,855,689	+		LRK54_RS12740	0.52	-0.6
2,855,689	+		LRK54_RS12740	0.52	+0.1
2,855,689	+		LRK54_RS12740	0.52	-0.8
2,855,689	+		LRK54_RS12740	0.52	-0.6
2,855,689	+		LRK54_RS12740	0.52	-1.4
2,855,689	+		LRK54_RS12740	0.52	-2.5
2,855,689	+		LRK54_RS12740	0.52	+0.3
2,855,690	-		LRK54_RS12740	0.52	+0.1
2,855,690	-		LRK54_RS12740	0.52	-1.8
2,855,690	-		LRK54_RS12740	0.52	+0.6
2,855,690	-		LRK54_RS12740	0.52	+0.1
2,855,690	-		LRK54_RS12740	0.52	-0.8
2,855,690	-		LRK54_RS12740	0.52	-2.0
2,855,690	-		LRK54_RS12740	0.52	-2.1
2,855,690	-		LRK54_RS12740	0.52	-1.6
2,855,690	-		LRK54_RS12740	0.52	-1.8
2,855,690	-		LRK54_RS12740	0.52	-0.5
2,855,690	-		LRK54_RS12740	0.52	-0.3
2,855,690	-		LRK54_RS12740	0.52	-1.2
2,855,690	-		LRK54_RS12740	0.52	-0.3
2,855,690	-		LRK54_RS12740	0.52	+2.4
2,855,719	+		LRK54_RS12740	0.53	-1.8
2,855,887	+		LRK54_RS12740	0.60	-1.0
2,855,887	+		LRK54_RS12740	0.60	-0.2
2,855,887	+		LRK54_RS12740	0.60	-0.4
2,855,887	+		LRK54_RS12740	0.60	+0.0
2,855,887	+		LRK54_RS12740	0.60	+0.8
2,855,887	+		LRK54_RS12740	0.60	-0.4
2,855,888	-		LRK54_RS12740	0.60	-0.0
2,855,888	-		LRK54_RS12740	0.60	-2.0
2,855,888	-		LRK54_RS12740	0.60	+0.8
2,855,888	-		LRK54_RS12740	0.60	-1.6
2,855,888	-		LRK54_RS12740	0.60	-1.3
2,855,888	-		LRK54_RS12740	0.60	+0.1
2,855,888	-		LRK54_RS12740	0.60	-0.6
2,855,888	-		LRK54_RS12740	0.60	-1.2
2,855,977	+		LRK54_RS12740	0.64	-0.2
2,855,977	+		LRK54_RS12740	0.64	-2.5
2,855,977	+		LRK54_RS12740	0.64	+0.4
2,855,977	+		LRK54_RS12740	0.64	+0.2
2,855,977	+		LRK54_RS12740	0.64	-1.2
2,855,977	+		LRK54_RS12740	0.64	+0.2
2,855,978	-		LRK54_RS12740	0.64	+1.4
2,855,978	-		LRK54_RS12740	0.64	-0.6
2,855,978	-		LRK54_RS12740	0.64	+0.2
2,855,978	-		LRK54_RS12740	0.64	-1.0
2,855,978	-		LRK54_RS12740	0.64	-1.4
2,855,978	-		LRK54_RS12740	0.64	-0.3
2,855,978	-		LRK54_RS12740	0.64	-0.3
2,855,978	-		LRK54_RS12740	0.64	-0.4
2,855,978	-		LRK54_RS12740	0.64	-1.0
2,856,199	+		LRK54_RS12740	0.74	-0.7
2,856,199	+		LRK54_RS12740	0.74	-1.3
2,856,199	+		LRK54_RS12740	0.74	-0.9
2,856,199	+		LRK54_RS12740	0.74	-0.7
2,856,199	+		LRK54_RS12740	0.74	+0.0
2,856,199	+		LRK54_RS12740	0.74	-1.4
2,856,199	+		LRK54_RS12740	0.74	-1.7
2,856,200	-		LRK54_RS12740	0.74	-1.0
2,856,200	-		LRK54_RS12740	0.74	+0.8
2,856,200	-		LRK54_RS12740	0.74	-1.4
2,856,200	-		LRK54_RS12740	0.74	-0.6
2,856,200	-		LRK54_RS12740	0.74	-0.5
2,856,205	+		LRK54_RS12740	0.74	-2.5
2,856,205	+		LRK54_RS12740	0.74	-2.9
2,856,205	+		LRK54_RS12740	0.74	+0.7
2,856,205	+		LRK54_RS12740	0.74	+0.6
2,856,205	+		LRK54_RS12740	0.74	-1.7
2,856,205	+		LRK54_RS12740	0.74	-0.5
2,856,205	+		LRK54_RS12740	0.74	-1.9
2,856,205	+		LRK54_RS12740	0.74	-2.0
2,856,205	+		LRK54_RS12740	0.74	+1.6
2,856,205	+		LRK54_RS12740	0.74	-0.4
2,856,205	+		LRK54_RS12740	0.74	-1.4
2,856,206	-		LRK54_RS12740	0.74	-1.1
2,856,206	-		LRK54_RS12740	0.74	-0.9
2,856,206	-		LRK54_RS12740	0.74	+0.6
2,856,206	-		LRK54_RS12740	0.74	-0.8
2,856,206	-		LRK54_RS12740	0.74	+0.3
2,856,206	-		LRK54_RS12740	0.74	-2.2
2,856,206	-		LRK54_RS12740	0.74	-1.5
2,856,206	-		LRK54_RS12740	0.74	-1.0
2,856,206	-		LRK54_RS12740	0.74	-0.4
2,856,287	-		LRK54_RS12740	0.77	-1.1
2,856,313	+		LRK54_RS12740	0.78	-1.3
2,856,313	+		LRK54_RS12740	0.78	-1.2
2,856,314	-		LRK54_RS12740	0.78	-1.1
2,856,314	-		LRK54_RS12740	0.78	-0.4
2,856,314	-		LRK54_RS12740	0.78	-1.1
2,856,365	-		LRK54_RS12740	0.81	-0.7
2,856,365	-		LRK54_RS12740	0.81	+1.0
2,856,759	+				+0.6
2,856,800	+				+0.5
2,856,800	+				+0.6
2,856,800	+				-0.0
2,856,800	+				+0.2
2,856,801	-				+0.2
2,856,801	-				-0.0
2,856,801	-				-0.4
2,856,801	-				-1.3
2,856,801	-				+0.3
2,856,801	-				-1.7
2,856,939	+		LRK54_RS12745	0.22	+0.4
2,856,939	+		LRK54_RS12745	0.22	-0.8
2,856,939	+		LRK54_RS12745	0.22	-1.1
2,856,939	+		LRK54_RS12745	0.22	-0.1
2,856,939	+		LRK54_RS12745	0.22	-0.5
2,856,939	+		LRK54_RS12745	0.22	-0.3
2,856,940	-		LRK54_RS12745	0.23	-0.9
2,856,940	-		LRK54_RS12745	0.23	-0.1
2,856,940	-		LRK54_RS12745	0.23	-0.4
2,856,940	-		LRK54_RS12745	0.23	+0.6
2,857,068	+		LRK54_RS12745	0.47	-1.0
2,857,068	+		LRK54_RS12745	0.47	-0.9
2,857,068	+		LRK54_RS12745	0.47	+0.8
2,857,068	+		LRK54_RS12745	0.47	-0.8
2,857,068	+		LRK54_RS12745	0.47	-0.8
2,857,068	+		LRK54_RS12745	0.47	-0.2
2,857,068	+		LRK54_RS12745	0.47	-0.1
2,857,068	+		LRK54_RS12745	0.47	+0.6
2,857,068	+		LRK54_RS12745	0.47	+0.4
2,857,068	+		LRK54_RS12745	0.47	+1.5
2,857,069	-		LRK54_RS12745	0.47	+0.4
2,857,069	-		LRK54_RS12745	0.47	-1.0
2,857,069	-		LRK54_RS12745	0.47	+0.1
2,857,069	-		LRK54_RS12745	0.47	+0.1
2,857,069	-		LRK54_RS12745	0.47	-0.2
2,857,069	-		LRK54_RS12745	0.47	-1.1
2,857,069	-		LRK54_RS12745	0.47	-0.9
2,857,069	-		LRK54_RS12745	0.47	-0.2
2,857,069	-		LRK54_RS12745	0.47	-1.8
2,857,069	-		LRK54_RS12745	0.47	-1.9
2,857,347	+				-0.1
2,857,348	-				-0.4
2,857,401	+				+0.4
2,857,401	+				+0.4
2,857,401	+				-0.3
2,857,401	+				-0.7
2,857,401	+				-0.1
2,857,402	-				+0.3
2,857,402	-				+0.2
2,857,402	-				+3.1
2,857,402	-				-0.2
2,857,402	-				+0.3
2,857,402	-				-0.8
2,857,457	+				+0.6
2,857,457	+				-0.3
2,857,457	+				-0.8
2,857,458	-				-1.2
2,857,458	-				-0.4
2,857,458	-				-1.6
2,857,458	-				+0.6
2,857,539	+		LRK54_RS12750	0.12	-0.3
2,857,540	-		LRK54_RS12750	0.12	-0.2
2,857,540	-		LRK54_RS12750	0.12	-0.2
2,857,588	+		LRK54_RS12750	0.15	+0.4
2,857,589	-		LRK54_RS12750	0.15	+0.7
2,857,589	-		LRK54_RS12750	0.15	+0.8
2,857,589	-		LRK54_RS12750	0.15	+0.1
2,857,589	-		LRK54_RS12750	0.15	-1.3
2,857,808	+		LRK54_RS12750	0.28	-0.7
2,857,809	-		LRK54_RS12750	0.28	-0.9
2,857,809	-		LRK54_RS12750	0.28	+0.8
2,857,809	-		LRK54_RS12750	0.28	+0.1