Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05055

Experiment: R2A with Zinc chloride 0.625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Zinc chloride 0.625 mM
1,082,111	+		LRK54_RS05050	0.70	+0.2
1,082,111	+		LRK54_RS05050	0.70	-1.1
1,082,111	+		LRK54_RS05050	0.70	-2.5
1,082,111	+		LRK54_RS05050	0.70	-0.2
1,082,111	+		LRK54_RS05050	0.70	-0.4
1,082,111	+		LRK54_RS05050	0.70	-1.3
1,082,111	+		LRK54_RS05050	0.70	-2.0
1,082,111	+		LRK54_RS05050	0.70	-0.1
1,082,111	+		LRK54_RS05050	0.70	-2.1
1,082,111	+		LRK54_RS05050	0.70	-2.9
1,082,111	+		LRK54_RS05050	0.70	-0.9
1,082,111	+		LRK54_RS05050	0.70	-0.4
1,082,111	+		LRK54_RS05050	0.70	-1.9
1,082,111	+		LRK54_RS05050	0.70	-1.2
1,082,111	+		LRK54_RS05050	0.70	+0.1
1,082,111	+		LRK54_RS05050	0.70	-0.5
1,082,111	+		LRK54_RS05050	0.70	-2.1
1,082,111	+		LRK54_RS05050	0.70	+0.4
1,082,112	-		LRK54_RS05050	0.70	-1.4
1,082,112	-		LRK54_RS05050	0.70	+1.5
1,082,112	-		LRK54_RS05050	0.70	+0.5
1,082,112	-		LRK54_RS05050	0.70	+0.8
1,082,112	-		LRK54_RS05050	0.70	-0.5
1,082,112	-		LRK54_RS05050	0.70	-1.0
1,082,112	-		LRK54_RS05050	0.70	-0.4
1,082,112	-		LRK54_RS05050	0.70	-0.3
1,082,112	-		LRK54_RS05050	0.70	-0.4
1,082,112	-		LRK54_RS05050	0.70	-0.9
1,082,112	-		LRK54_RS05050	0.70	-0.7
1,082,112	-		LRK54_RS05050	0.70	-1.3
1,082,112	-		LRK54_RS05050	0.70	-1.9
1,082,112	-		LRK54_RS05050	0.70	-0.5
1,082,112	-		LRK54_RS05050	0.70	-0.4
1,082,112	-		LRK54_RS05050	0.70	-1.4
1,082,112	-		LRK54_RS05050	0.70	-1.2
1,082,112	-		LRK54_RS05050	0.70	-2.4
1,082,112	-		LRK54_RS05050	0.70	-0.8
1,082,112	-		LRK54_RS05050	0.70	+1.4
1,082,112	-		LRK54_RS05050	0.70	-0.4
1,082,135	+		LRK54_RS05050	0.71	+1.4
1,082,135	+		LRK54_RS05050	0.71	-1.6
1,082,135	+		LRK54_RS05050	0.71	+2.1
1,082,135	+		LRK54_RS05050	0.71	-2.1
1,082,135	+		LRK54_RS05050	0.71	+0.8
1,082,135	+		LRK54_RS05050	0.71	-1.1
1,082,135	+		LRK54_RS05050	0.71	-1.1
1,082,135	+		LRK54_RS05050	0.71	-2.1
1,082,135	+		LRK54_RS05050	0.71	-1.3
1,082,136	-		LRK54_RS05050	0.71	-0.7
1,082,136	-		LRK54_RS05050	0.71	-0.6
1,082,136	-		LRK54_RS05050	0.71	-2.0
1,082,136	-		LRK54_RS05050	0.71	+0.5
1,082,136	-		LRK54_RS05050	0.71	+0.1
1,082,136	-		LRK54_RS05050	0.71	+0.8
1,082,136	-		LRK54_RS05050	0.71	+0.1
1,082,136	-		LRK54_RS05050	0.71	-0.1
1,082,136	-		LRK54_RS05050	0.71	+2.4
1,082,136	-		LRK54_RS05050	0.71	-1.5
1,082,136	-		LRK54_RS05050	0.71	+0.1
1,082,136	-		LRK54_RS05050	0.71	-1.2
1,082,233	-		LRK54_RS05050	0.76	-1.9
1,082,279	+		LRK54_RS05050	0.78	+0.1
1,082,279	+		LRK54_RS05050	0.78	-0.2
1,082,279	+		LRK54_RS05050	0.78	-0.4
1,082,285	+		LRK54_RS05050	0.78	-3.2
1,082,285	+		LRK54_RS05050	0.78	-1.9
1,082,285	+		LRK54_RS05050	0.78	-0.8
1,082,285	+		LRK54_RS05050	0.78	-0.8
1,082,285	+		LRK54_RS05050	0.78	-2.3
1,082,285	+		LRK54_RS05050	0.78	-1.3
1,082,285	+		LRK54_RS05050	0.78	+0.4
1,082,285	+		LRK54_RS05050	0.78	-1.2
1,082,285	+		LRK54_RS05050	0.78	+1.4
1,082,285	+		LRK54_RS05050	0.78	-1.1
1,082,285	+		LRK54_RS05050	0.78	-1.1
1,082,285	+		LRK54_RS05050	0.78	-2.7
1,082,285	+		LRK54_RS05050	0.78	-1.9
1,082,285	+		LRK54_RS05050	0.78	-0.2
1,082,286	-		LRK54_RS05050	0.78	-0.7
1,082,286	-		LRK54_RS05050	0.78	+2.4
1,082,286	-		LRK54_RS05050	0.78	-2.9
1,082,286	-		LRK54_RS05050	0.78	-2.3
1,082,286	-		LRK54_RS05050	0.78	-1.3
1,082,286	-		LRK54_RS05050	0.78	-0.4
1,082,286	-		LRK54_RS05050	0.78	-1.4
1,082,286	-		LRK54_RS05050	0.78	-1.5
1,082,286	-		LRK54_RS05050	0.78	-0.1
1,082,286	-		LRK54_RS05050	0.78	-0.2
1,082,286	-		LRK54_RS05050	0.78	-0.4
1,082,286	-		LRK54_RS05050	0.78	+0.6
1,082,286	-		LRK54_RS05050	0.78	+1.1
1,082,286	-		LRK54_RS05050	0.78	-1.4
1,082,286	-		LRK54_RS05050	0.78	-1.2
1,082,286	-		LRK54_RS05050	0.78	-1.7
1,082,286	-		LRK54_RS05050	0.78	-0.4
1,082,286	-		LRK54_RS05050	0.78	+0.4
1,082,286	-		LRK54_RS05050	0.78	-1.9
1,082,286	-		LRK54_RS05050	0.78	-0.2
1,082,286	-		LRK54_RS05050	0.78	-1.3
1,082,286	-		LRK54_RS05050	0.78	+0.1
1,082,286	-		LRK54_RS05050	0.78	+1.8
1,082,286	-		LRK54_RS05050	0.78	-0.2
1,082,286	-		LRK54_RS05050	0.78	-0.4
1,082,286	-		LRK54_RS05050	0.78	-0.6
1,082,286	-		LRK54_RS05050	0.78	+0.2
1,082,286	-		LRK54_RS05050	0.78	+0.6
1,082,286	-		LRK54_RS05050	0.78	-1.4
1,082,286	-		LRK54_RS05050	0.78	-1.1
1,082,286	-		LRK54_RS05050	0.78	+0.2
1,082,286	-		LRK54_RS05050	0.78	+1.4
1,082,286	-		LRK54_RS05050	0.78	-1.4
1,082,286	-		LRK54_RS05050	0.78	-1.1
1,082,342	+		LRK54_RS05050	0.80	-0.4
1,082,342	+		LRK54_RS05050	0.80	-0.6
1,082,343	-		LRK54_RS05050	0.80	+0.2
1,082,343	-		LRK54_RS05050	0.80	-2.8
1,082,343	-		LRK54_RS05050	0.80	-2.1
1,082,343	-		LRK54_RS05050	0.80	+0.1
1,082,394	-		LRK54_RS05050	0.83	-1.5
1,082,394	-		LRK54_RS05050	0.83	-0.8
1,082,414	+		LRK54_RS05050	0.84	-0.9
1,082,414	+		LRK54_RS05050	0.84	-0.4
1,082,414	+		LRK54_RS05050	0.84	-3.5
1,082,415	-		LRK54_RS05050	0.84	-0.2
1,082,415	-		LRK54_RS05050	0.84	-1.4
1,082,415	-		LRK54_RS05050	0.84	-0.4
1,082,415	-		LRK54_RS05050	0.84	+1.4
1,082,415	-		LRK54_RS05050	0.84	-1.9
1,082,415	-		LRK54_RS05050	0.84	-0.6
1,082,415	-		LRK54_RS05050	0.84	-0.4
1,082,415	-		LRK54_RS05050	0.84	+0.3
1,082,415	-		LRK54_RS05050	0.84	+1.2
1,082,417	+		LRK54_RS05050	0.84	-1.6
1,082,418	-		LRK54_RS05050	0.84	-0.9
1,082,418	-		LRK54_RS05050	0.84	-0.0
1,082,571	+				-1.3
1,082,571	+				-0.4
1,082,572	-				-1.1
1,082,572	-				-0.7
1,082,572	-				-0.0
1,082,603	+				-0.9
1,082,603	+				-2.3
1,082,604	-				+0.2
1,082,609	+				-2.5
1,082,609	+				-1.9
1,082,610	-				-0.2
1,082,627	+				+1.4
1,082,627	+				-1.7
1,082,627	+				+0.8
1,082,627	+				-0.2
1,082,627	+				-1.6
1,082,627	+				-1.9
1,082,627	+				-1.2
1,082,627	+				-1.1
1,082,627	+				-0.4
1,082,628	-				-0.3
1,082,628	-				+0.6
1,082,628	-				-1.2
1,082,628	-				-2.4
1,082,628	-				-0.0
1,082,628	-				-0.9
1,082,628	-				-1.4
1,082,628	-				-0.9
1,082,628	-				-1.3
1,082,628	-				-0.6
1,082,628	-				-0.4
1,082,628	-				-0.7
1,082,628	-				+1.5
1,082,628	-				-1.5
1,082,628	-				+0.4
1,082,628	-				+0.7
1,082,628	-				+0.2
1,082,628	-				-0.8
1,082,628	-				+1.5
1,082,628	-				-1.5
1,082,706	+				-0.2
1,082,706	+				+0.4
1,082,706	+				-1.6
1,082,706	+				-1.7
1,082,706	+				-0.2
1,082,706	+				-3.2
1,082,706	+				+0.4
1,082,706	+				+0.8
1,082,706	+				-0.2
1,082,706	+				-4.1
1,082,706	+				-1.1
1,082,706	+				-1.8
1,082,707	-				-0.8
1,082,707	-				+0.5
1,082,707	-				-1.6
1,082,707	-				-2.3
1,082,707	-				-1.5
1,082,707	-				-2.1
1,082,707	-				+4.4
1,082,707	-				+1.5
1,082,707	-				-0.5
1,082,707	-				-0.2
1,082,707	-				-0.0
1,082,707	-				+0.6
1,082,707	-				-1.3
1,082,707	-				+0.7
1,082,834	+				-2.7
1,082,835	-				-1.7
1,082,835	-				+0.4
1,082,835	-				+0.6
1,082,835	-				-0.3
1,082,835	-				-0.2
1,082,835	-				+0.1
1,082,867	+				+0.1
1,082,868	-				-2.5
1,082,868	-				+2.4
1,082,868	-				-1.6
1,082,868	-				-0.8
1,082,986	+				+1.0
1,082,986	+				+0.5
1,082,987	-				+1.0
1,082,987	-				-1.5
1,082,987	-				+1.0
1,082,987	-				+1.4
1,083,059	+				+2.0
1,083,059	+				-0.2
1,083,059	+				+1.3
1,083,059	+				+1.0
1,083,059	+				+0.5
1,083,059	+				+0.7
1,083,059	+				+0.7
1,083,059	+				+2.1
1,083,059	+				+0.6
1,083,059	+				+0.9
1,083,059	+				+1.4
1,083,059	+				+1.0
1,083,059	+				+1.8
1,083,059	+				+0.4
1,083,059	+				+1.0
1,083,059	+				+1.9
1,083,059	+				+1.5
1,083,059	+				+1.9
1,083,059	+				-0.4
1,083,059	+				-1.1
1,083,059	+				+2.5
1,083,059	+				+0.9
1,083,060	-				+1.6
1,083,060	-				-0.0
1,083,060	-				+0.8
1,083,060	-				+1.1
1,083,060	-				+1.1
1,083,060	-				-0.5
1,083,060	-				-0.8
1,083,060	-				-0.1
1,083,060	-				-0.3
1,083,060	-				+1.2
1,083,060	-				-0.3
1,083,060	-				+1.1
1,083,060	-				+0.1
1,083,060	-				+1.8
1,083,060	-				+1.0
1,083,060	-				-0.6
1,083,060	-				+0.7
1,083,176	+		LRK54_RS05055	0.14	+2.3
1,083,176	+		LRK54_RS05055	0.14	+0.6
1,083,176	+		LRK54_RS05055	0.14	+1.1
1,083,176	+		LRK54_RS05055	0.14	+0.2
1,083,176	+		LRK54_RS05055	0.14	+2.0
1,083,176	+		LRK54_RS05055	0.14	+1.2
1,083,176	+		LRK54_RS05055	0.14	+2.1
1,083,176	+		LRK54_RS05055	0.14	+1.9
1,083,176	+		LRK54_RS05055	0.14	-0.9
1,083,177	-		LRK54_RS05055	0.14	+0.5
1,083,177	-		LRK54_RS05055	0.14	+1.1
1,083,177	-		LRK54_RS05055	0.14	+1.7
1,083,177	-		LRK54_RS05055	0.14	+0.6
1,083,177	-		LRK54_RS05055	0.14	+1.9
1,083,177	-		LRK54_RS05055	0.14	+1.6
1,083,177	-		LRK54_RS05055	0.14	+1.3
1,083,177	-		LRK54_RS05055	0.14	+0.8
1,083,177	-		LRK54_RS05055	0.14	+1.1
1,083,177	-		LRK54_RS05055	0.14	+0.8
1,083,177	-		LRK54_RS05055	0.14	+1.9
1,083,177	-		LRK54_RS05055	0.14	+1.2
1,083,218	+		LRK54_RS05055	0.17	+1.4
1,083,218	+		LRK54_RS05055	0.17	+0.7
1,083,218	+		LRK54_RS05055	0.17	+1.5
1,083,218	+		LRK54_RS05055	0.17	+0.2
1,083,218	+		LRK54_RS05055	0.17	+0.0
1,083,218	+		LRK54_RS05055	0.17	+0.7
1,083,218	+		LRK54_RS05055	0.17	+0.2
1,083,218	+		LRK54_RS05055	0.17	+1.2
1,083,218	+		LRK54_RS05055	0.17	+1.7
1,083,218	+		LRK54_RS05055	0.17	+0.8
1,083,218	+		LRK54_RS05055	0.17	+0.1
1,083,219	-		LRK54_RS05055	0.17	+1.1
1,083,219	-		LRK54_RS05055	0.17	+0.8
1,083,219	-		LRK54_RS05055	0.17	+0.9
1,083,219	-		LRK54_RS05055	0.17	+0.8
1,083,219	-		LRK54_RS05055	0.17	+0.8
1,083,266	+		LRK54_RS05055	0.20	+1.8
1,083,266	+		LRK54_RS05055	0.20	+1.1
1,083,266	+		LRK54_RS05055	0.20	+1.0
1,083,267	-		LRK54_RS05055	0.20	+0.2
1,083,267	-		LRK54_RS05055	0.20	+0.8
1,083,267	-		LRK54_RS05055	0.20	+0.3
1,083,267	-		LRK54_RS05055	0.20	+1.2
1,083,267	-		LRK54_RS05055	0.20	+0.7
1,083,347	+		LRK54_RS05055	0.26	+1.3
1,083,347	+		LRK54_RS05055	0.26	+1.0
1,083,348	-		LRK54_RS05055	0.27	+0.5
1,083,419	+		LRK54_RS05055	0.32	+0.8
1,083,419	+		LRK54_RS05055	0.32	+0.7
1,083,419	+		LRK54_RS05055	0.32	-0.8
1,083,419	+		LRK54_RS05055	0.32	+2.4
1,083,419	+		LRK54_RS05055	0.32	+0.6
1,083,419	+		LRK54_RS05055	0.32	+0.6
1,083,419	+		LRK54_RS05055	0.32	+0.6
1,083,419	+		LRK54_RS05055	0.32	-0.9
1,083,419	+		LRK54_RS05055	0.32	-0.4
1,083,420	-		LRK54_RS05055	0.32	+0.3
1,083,420	-		LRK54_RS05055	0.32	+1.5
1,083,420	-		LRK54_RS05055	0.32	+1.6
1,083,420	-		LRK54_RS05055	0.32	+0.4
1,083,593	+		LRK54_RS05055	0.45	+0.4
1,083,593	+		LRK54_RS05055	0.45	+0.7
1,083,593	+		LRK54_RS05055	0.45	-1.7
1,083,593	+		LRK54_RS05055	0.45	-3.3
1,083,593	+		LRK54_RS05055	0.45	+1.1
1,083,594	-		LRK54_RS05055	0.45	-0.1
1,083,594	-		LRK54_RS05055	0.45	+0.6
1,083,594	-		LRK54_RS05055	0.45	+0.7
1,083,594	-		LRK54_RS05055	0.45	-1.2
1,083,594	-		LRK54_RS05055	0.45	+1.2
1,083,594	-		LRK54_RS05055	0.45	+1.1
1,083,629	+		LRK54_RS05055	0.48	+1.4
1,083,629	+		LRK54_RS05055	0.48	-0.3
1,083,629	+		LRK54_RS05055	0.48	+0.2
1,083,629	+		LRK54_RS05055	0.48	+1.4
1,083,629	+		LRK54_RS05055	0.48	+0.9
1,083,629	+		LRK54_RS05055	0.48	+0.5
1,083,629	+		LRK54_RS05055	0.48	+0.5
1,083,629	+		LRK54_RS05055	0.48	+0.7
1,083,629	+		LRK54_RS05055	0.48	+1.0
1,083,629	+		LRK54_RS05055	0.48	+0.2
1,083,629	+		LRK54_RS05055	0.48	+0.8
1,083,630	-		LRK54_RS05055	0.48	+0.8
1,083,630	-		LRK54_RS05055	0.48	+1.3
1,083,630	-		LRK54_RS05055	0.48	+0.1
1,083,630	-		LRK54_RS05055	0.48	+0.4
1,083,630	-		LRK54_RS05055	0.48	+2.0
1,083,630	-		LRK54_RS05055	0.48	+1.2
1,083,630	-		LRK54_RS05055	0.48	+1.1
1,083,630	-		LRK54_RS05055	0.48	+1.1
1,083,630	-		LRK54_RS05055	0.48	+0.5
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