Experiment: R2A with Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24265 and CA265_RS24270 are separated by 303 nucleotides CA265_RS24270 and CA265_RS24275 are separated by 178 nucleotides CA265_RS24275 and CA265_RS24280 are separated by 36 nucleotides CA265_RS24280 and CA265_RS24285 are separated by 232 nucleotides
CA265_RS24265: CA265_RS24265 - hypothetical protein, at 5,907,014 to 5,907,385
_RS24265
CA265_RS24270: CA265_RS24270 - hypothetical protein, at 5,907,689 to 5,907,898
_RS24270
CA265_RS24275: CA265_RS24275 - hypothetical protein, at 5,908,077 to 5,908,427
_RS24275
CA265_RS24280: CA265_RS24280 - cupin, at 5,908,464 to 5,908,865
_RS24280
CA265_RS24285: CA265_RS24285 - hypothetical protein, at 5,909,098 to 5,909,439
_RS24285
CA265_RS24290: CA265_RS24290 - hypothetical protein, at 5,909,339 to 5,909,941
_RS24290
Position (kb) 5908
5909 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5907.096 kb on - strand, within CA265_RS24265 at 5907.128 kb on + strand, within CA265_RS24265 at 5907.128 kb on + strand, within CA265_RS24265 at 5907.131 kb on - strand, within CA265_RS24265 at 5907.172 kb on + strand, within CA265_RS24265 at 5907.176 kb on - strand, within CA265_RS24265 at 5907.234 kb on - strand, within CA265_RS24265 at 5907.249 kb on + strand, within CA265_RS24265 at 5907.320 kb on - strand, within CA265_RS24265 at 5907.384 kb on - strand at 5907.591 kb on + strand at 5907.690 kb on + strand at 5907.732 kb on - strand, within CA265_RS24270 at 5907.756 kb on - strand, within CA265_RS24270 at 5907.759 kb on + strand, within CA265_RS24270 at 5907.763 kb on + strand, within CA265_RS24270 at 5907.763 kb on + strand, within CA265_RS24270 at 5907.763 kb on + strand, within CA265_RS24270 at 5907.763 kb on + strand, within CA265_RS24270 at 5907.764 kb on - strand, within CA265_RS24270 at 5907.921 kb on + strand at 5907.958 kb on - strand at 5907.973 kb on + strand at 5907.984 kb on + strand at 5908.074 kb on - strand at 5908.104 kb on - strand at 5908.121 kb on + strand, within CA265_RS24275 at 5908.141 kb on - strand, within CA265_RS24275 at 5908.150 kb on - strand, within CA265_RS24275 at 5908.161 kb on + strand, within CA265_RS24275 at 5908.162 kb on - strand, within CA265_RS24275 at 5908.164 kb on - strand, within CA265_RS24275 at 5908.202 kb on - strand, within CA265_RS24275 at 5908.216 kb on + strand, within CA265_RS24275 at 5908.248 kb on - strand, within CA265_RS24275 at 5908.303 kb on + strand, within CA265_RS24275 at 5908.303 kb on + strand, within CA265_RS24275 at 5908.304 kb on - strand, within CA265_RS24275 at 5908.310 kb on - strand, within CA265_RS24275 at 5908.348 kb on + strand, within CA265_RS24275 at 5908.359 kb on - strand, within CA265_RS24275 at 5908.359 kb on - strand, within CA265_RS24275 at 5908.442 kb on + strand at 5908.489 kb on + strand at 5908.536 kb on + strand, within CA265_RS24280 at 5908.585 kb on + strand, within CA265_RS24280 at 5908.645 kb on + strand, within CA265_RS24280 at 5908.646 kb on - strand, within CA265_RS24280 at 5908.649 kb on + strand, within CA265_RS24280 at 5908.722 kb on - strand, within CA265_RS24280 at 5908.738 kb on + strand, within CA265_RS24280 at 5908.814 kb on - strand, within CA265_RS24280 at 5908.856 kb on - strand at 5908.881 kb on + strand at 5908.896 kb on + strand at 5908.994 kb on - strand at 5909.004 kb on + strand at 5909.005 kb on - strand at 5909.006 kb on + strand at 5909.007 kb on - strand at 5909.389 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nalidixic 0.008 mg/ml remove 5,907,096 - CA265_RS24265 0.22 -0.3 5,907,128 + CA265_RS24265 0.31 -0.7 5,907,128 + CA265_RS24265 0.31 -0.5 5,907,131 - CA265_RS24265 0.31 -1.5 5,907,172 + CA265_RS24265 0.42 +0.5 5,907,176 - CA265_RS24265 0.44 +0.1 5,907,234 - CA265_RS24265 0.59 -0.5 5,907,249 + CA265_RS24265 0.63 -0.0 5,907,320 - CA265_RS24265 0.82 -0.3 5,907,384 - -0.6 5,907,591 + +0.3 5,907,690 + -1.1 5,907,732 - CA265_RS24270 0.20 -0.7 5,907,756 - CA265_RS24270 0.32 -1.0 5,907,759 + CA265_RS24270 0.33 +0.9 5,907,763 + CA265_RS24270 0.35 -0.1 5,907,763 + CA265_RS24270 0.35 -0.9 5,907,763 + CA265_RS24270 0.35 +0.1 5,907,763 + CA265_RS24270 0.35 +0.4 5,907,764 - CA265_RS24270 0.36 +0.2 5,907,921 + -0.4 5,907,958 - -0.5 5,907,973 + -0.1 5,907,984 + +0.0 5,908,074 - -0.1 5,908,104 - +0.3 5,908,121 + CA265_RS24275 0.13 -0.1 5,908,141 - CA265_RS24275 0.18 -0.6 5,908,150 - CA265_RS24275 0.21 -0.7 5,908,161 + CA265_RS24275 0.24 -0.6 5,908,162 - CA265_RS24275 0.24 -2.2 5,908,164 - CA265_RS24275 0.25 -0.1 5,908,202 - CA265_RS24275 0.36 +0.1 5,908,216 + CA265_RS24275 0.40 +0.3 5,908,248 - CA265_RS24275 0.49 -1.0 5,908,303 + CA265_RS24275 0.64 -1.0 5,908,303 + CA265_RS24275 0.64 +1.9 5,908,304 - CA265_RS24275 0.65 -0.5 5,908,310 - CA265_RS24275 0.66 -3.3 5,908,348 + CA265_RS24275 0.77 -1.1 5,908,359 - CA265_RS24275 0.80 -1.3 5,908,359 - CA265_RS24275 0.80 +0.1 5,908,442 + +1.9 5,908,489 + +1.9 5,908,536 + CA265_RS24280 0.18 -0.0 5,908,585 + CA265_RS24280 0.30 +1.1 5,908,645 + CA265_RS24280 0.45 -1.2 5,908,646 - CA265_RS24280 0.45 -0.9 5,908,649 + CA265_RS24280 0.46 -1.2 5,908,722 - CA265_RS24280 0.64 -0.6 5,908,738 + CA265_RS24280 0.68 -1.7 5,908,814 - CA265_RS24280 0.87 +0.3 5,908,856 - -0.4 5,908,881 + -1.1 5,908,896 + +1.0 5,908,994 - -0.5 5,909,004 + -1.5 5,909,005 - +1.0 5,909,006 + -1.0 5,909,007 - +0.5 5,909,389 - +0.3
Or see this region's nucleotide sequence